These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 669 fasta sequence [TTTTTTTTTTTTAACGGGAAAAAATTTATCAGGAAGCTTATATTTCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGGGCGAAAGTGTACC-GGGCACTACGACTTTGAGCATCATCTCACAC-GGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCG------CCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAACGGTTCACAGGAAACGAGCCTAC] [-] EMBL SM58061 [TTTTTTTTTTTTAACGGGAAAAAA TTATCAGG AGC TATA TTCAATTTAATGCATTCGCCCTGTCGTGAGTGCAGGGCGAAAGTGTACC GGGCACTACGACTTTGAGCATCATCTCACACGGGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGC ] [-] EMBL AI395779 [ TTTTTAACGGGAAAAAATTTATCAGGAAGCTTATATTTCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGCGCGAAAGTGTACC GGGCACTACGACTTTGAGCATCATCTCACAC GGACTTCGTTCACGCCTCCACATTGCATCGAC ] [+] EMBL AI975799 [ AAAAATTTATCAGGAAGCTTGTTTTTCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGGGCGAAAGTGTACCGGGGCACTACGACTTTGAGCATCATCTCACAC GGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCG GCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCA ] [-] EMBL AA559799 [ AAAAATTTATCAGGAAGCTTATATTTCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGGGCGAAAGTGTACC GGGCACTACGACTTTGAGCATCATCTCACAC GGACTTNGTTCACGCCTCCACATTGCATNGACTTGCTATATGGCCATAACCATGGCANTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTT ] [+] EMBL AI975471 [ AAAAATTTATCAGGAAGCTTGTATTTCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGGGCGAAAGTGTACCGGGGCACTACGACTTTGAGCATCATCTCACAC GGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCG CCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCA ] [+] EMBL AI976958 [ CTTATATTGCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGGGCGAAAGTGTACC GGGCACTACGACTTTGAGCATGATCTCACAC GGACTTAGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGAGACCATATTTATTACATCTGAAGCATAACGAGTCGCTATTATTATTTGGGCAGTTTCAAACGATGTGGCCTGACTCACCACAACTGTTACAACGCCCACCACCACCACCACCGGCTCCACCATTATAGCCACTATCACCTCGCT ] [-] EMBL CD131785 [ TGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACC ] [+] EMBL CD142657 [ CTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGCGCCGCTATTATTATTTGGGCAGATTCGA ] [-] EMBL CD144296 [ CGATGTGGCCTGACTCACCACAACTGTAANAAGGCCCACCACCACCACCACCGCNTCCACCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAAT ] [+] EMBL CD146133 [ CCACCACCACCGCCTCCA CCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATATCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCA ] [-] EMBL CD146612 [ gCCTCCA CCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCcg ] [-] EMBL AI976012 [ tCCG CCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCTCCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAG ] [-] EMBL CD134120 [ CATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCTCAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTC ] [+] EMBL CD144428 [ TATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGANACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAACGGTTCACAGGAAACGAGCCT ] [+] EMBL CD144149 [ TATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGCGCAAAGTGTCCCGTCCCACCACAGTTGAGACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCGCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAAT ] [+] EMBL CD142831 [ TATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCAAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACC ] [+] EMBL CD144169 [ TATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGAGCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAACG ] [-] EMBL CD138934 [ ATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCA ] [+] EMBL CD146150 [ CACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTACCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACC ] [+] EMBL CD146189 [ CACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACC ] [-] EMBL CD148234 [ ACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTA ] [-] EMBL CD142927 [ ACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAACGGTTCACAGGAAACGAGTCTAC] consensusID : consensus_10850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 110 fasta sequence [CGGGCAGCATCATCTCCCCAAATAATAATAGCGACACGCTATGCTACAGATGTAATAAATATGGTCACTTCGCGAGAGACTGTACGGAAAGTGGAGGTTCTGGTCCGCAC] [+] EMBL CD168441 [CGGGCAGCATCATCTCCCCAAATAATAATAGCGACACGCTATGCTACAGATGTAATAAATATGGTCACTTCGCGAGAGACTGTACGGAAAGTGGAGGTTCTGGTCCGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10850#0 TTTTTTTTTTTTAACGGGAAAAAATTTATCAGGAAGCTTATATTTCAATTTAATGCATTC 60 consensus_10850#1 ------------------------------------------------------------ consensus_10850#0 GCCTTGTCGTGAGTGCAGGGCGAAAGTGTACCGGGCACTACGACTTTGAGCATCATCTCA 120 consensus_10850#1 ------------------------------------------------------------ consensus_10850#0 CACGGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCA 180 consensus_10850#1 ------------------------------------------------------------ consensus_10850#0 CTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATA 240 consensus_10850#1 ------------------------------------------------------------ consensus_10850#0 TTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTG 300 consensus_10850#1 -------------------------------------------------CGGGCAGCATC 11 ** * * consensus_10850#0 GCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCGCCATTATAGCCACT 360 consensus_10850#1 ATCT--CCCCAAATAATAATAGCGACACGCTATGCTACAGATGTAATAAATATGGTCACT 69 ** * * * ** ** * ** * * * ** * *** * **** consensus_10850#0 AT-CACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGT 419 consensus_10850#1 TCGCGAGAGACTGTACGGAAAGTGGAGGTTCTGGTCCGCAC------------------- 110 * **** ** * ** * *** ** * * consensus_10850#0 TGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTC 479 consensus_10850#1 ------------------------------------------------------------ consensus_10850#0 GTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAAT 539 consensus_10850#1 ------------------------------------------------------------ consensus_10850#0 CGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATAC 599 consensus_10850#1 ------------------------------------------------------------ consensus_10850#0 ACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAACGGTTCACAGGAA 659 consensus_10850#1 ------------------------------------------------------------ consensus_10850#0 ACGAGCCTAC 669 consensus_10850#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||