These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10853#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [TCCCACTTCGTTTCCCACTTAGCCAATATTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGTGTCCGGACGTTAGCACCCGGTGCACTGTCTCCCAAGCTGTACTCATCGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGCTCTACCCCCGACGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCTATCTCCAGGTTAGCTCAGCCGGGTGTTGGATGTCCCGGTTCAAGCCTGTAGTCGTGCCTGGTAGGCAAATCCGCCGGGCTTAGATGAGGGGTGATAACGAGGCGGCTTGCCGCCGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGACACTGGTGCGCGAGATGGGTATTCTAAGGCGCTTGAGAGAACTCTGGAGAAGGAACTCGGCAAATTGACACCGNTACTTCGGAAGAAGGTGTGCCTTTAGTAGGTGAACCCGTACAGGGGG] [+] EMBL CD086867 [TCCCACTTCGTTTCCCACTTAGCCAATATTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGTGTCCGGACGTTAGCACCCGGTGCACTGTCTCCCAAGCTGTACTCATCGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGCTCTACCCCCGACGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCTATCTCCAGGTTAGCTCAGCCGGGTGTTGGATGTCCCGGTTCAAGCCTGTAGTCGTGCCTGGTAGGCAAATCCGCCGGGCTTAGATGAGGGGTGATAACGAGGCGGCTTGCCGCCGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGACACTGGTGCGCGAGATGGGTATTCTAAGGCGCTTGAGAGAACTCTGGAGAAGGAACTCGGCAAATTGACACCGNTACTTCGGAAGAAGGTGTGCCTTTAGTAGGTGAACCCGTACAGGGGG] consensusID : consensus_10853#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 401 fasta sequence [AAAACTCTTTGGACTTGTTGTTGGTGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAA-------T----CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC-GATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGGTGGGTCAGTGCCATGCTTATTC] [+] EMBL CD155432 [AAAACTCTTTGGACTTGTTGTTGGTGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAG ] [+] EMBL CD192035 [ tgatgtattGACTTGTTGTTGGTGTATTTGGTGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAAAATCGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAGTATATTGTGTGTGTGTATTGATGGGTATGGTGATCAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAG ] [+] EMBL CD117812 [ GTATTTGGCGAAGTGGTGTGGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAAAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATATTGAACCTATATTTTGTGCTATTCGTCAGT ] [+] EMBL CD184595 [ GGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATATAACTGGATAAACAGTAAAAGGACTAGACAAACATGAGATTGGTGACTAT ] [+] EMBL CD155141 [ GTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTATAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGGTGGGTCAGTGCCATGCTTATTC] [+] EMBL CD155290 [ AACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTGAGTCGTCGTCAGCTAGGCGTACTTGTGATGTCG ] [+] EMBL CD118154 [ CGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATAT ] [+] EMBL CD118102 [ CGCCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTANAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGATATATTGAACCTATATTTTGTGCTATTCCTCAGTCGTCCTCATCA ] [+] EMBL CD118150 [ CGTCGATATGTGGAGATGCAATCGATGGAATGGATCTGGCGATTTGTTGACCAGTTAAAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATT ] [-] EMBL CD120019 [ TGTTGACGAGTTAGAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGGTGGG ] [+] EMBL CD155479 [ GAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGAC ] [+] EMBL CD113340 [ cagTGATATGTGGAGTTGCAGTATATTGTATGTGTGTCTTGATGGGTATGGCGGACAGGAGATAGTGAACCTATATTTTGCGCTATTCGTCAGTCGTCGTCAG ] [+] EMBL CD155323 [ ATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATATAACTGGATAAGCAGTAAAAGGACTAGAGAAA ] [+] EMBL CD118044 [ TGTGTATTGATGGGTATGGTGGACAGGAAATACTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAG ] [+] EMBL CD118135 [ GAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGATGACTATTCGTGAGTGAGTGGTGGGTCA ] [+] EMBL CD063916 [ gtGAGAGAAGTGGAGC TGTTGGTGGACTCAGATATAACTGGAT AGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTG ] consensusID : consensus_10853#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 284 fasta sequence [TGACAACGACGCCTTGAATTGCCATGCCACCCACGGGTCTTTTCATGTATTGACTTGTTGTTGGTGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAATCGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATATTGTGCT] [+] EMBL CD155361 [TGACAACGACGCCTTGAATTGCCATGCCACCCACGGGTCTTTTCATGTATTGACTTGTTGTTGGCGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCAATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGGTGTAAATGAATCGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATATTGTGCT] [+] EMBL CD155443 [TGACAACGTCGCCTTGAATTGCCATGCCACCCACGGGTCTTTTCATGTATTGACTTGTTGTTGGTGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAATCGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGATATGGTGGACAGGAGATcg ] [+] EMBL CD155380 [TGACAACGACGCCTTGAATTGCCATGCCACCCACGGGTCTTTTCATGTATTGACTTGTTGTTGGTGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAATCGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTc ] [+] EMBL CD155509 [ GAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTCGTTGACGAGTTAGAATCGATGTAAATGAAg ] consensusID : consensus_10853#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence [AAACAGTTGCAGCCACCGATTCTCTGCGAACCCATTCGGCTCCAGGAGTAAATCCCTTCACCTAATAGAGGCACACCTTCTTCCGAAGTTACGGTGTCCATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAAGCG] [+] EMBL CD087772 [AAACAGTTGCAGCCACCGATTCTCTGCGAACCCATTCGGCTCCAGGAGTAAATCCCTTCACCTAATAGAGGCACACCTTCTTCCGAAGTTACGGTGTCCATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAAGCG] consensusID : consensus_10853#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 89 fasta sequence [AGAAGTGGAGCTTGTTGGTGGACTCGATATAACTGGATAAGCAGTAAAAGGACTANACAAACATGACATTAGAATCTTTCGTGAGTGAG] [+] EMBL CD190864 [AGAAGTGGAGCTTGTTGGTGGACTCGATATAACTGGATAAGCAGTAAAAGGACTANACAAACATGACATTAGAATCTTTCGTGAGTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10853#1 ------------------------------------------------------------ consensus_10853#4 ------------------------------------------------------------ consensus_10853#2 ------------------------------------------------------------ consensus_10853#3 ------------------------------------------------------------ consensus_10853#0 TCCCACTTCGTTTCCCACTTAGCCAATATTAGGGACCTTAGCTGGCGGTCTGGGTTGTTT 60 consensus_10853#1 -----------------------------AAAACTCTTTGGACTTGTTGTTGGTGTATTT 31 consensus_10853#4 ------------------------------------------------------------ consensus_10853#2 ------------------------------------------------------------ consensus_10853#3 ------------------------------------------------------------ consensus_10853#0 CCCTCTTGTGTCCGGACGTTAGCACCCGGTGCACTGTCTCCCAAGCTGTACTCATCGGTA 120 consensus_10853#1 GGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGA 91 consensus_10853#4 ------------------------------------------------------------ consensus_10853#2 ------------------------------------------------------------ consensus_10853#3 ------------------------------------------------------------ consensus_10853#0 TTCGGAGTTTGCATAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGCTCTAC 180 consensus_10853#1 TATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATG 151 consensus_10853#4 ------------------------------------------------------------ consensus_10853#2 ------------------------------------------TGACAACGACGCCTTGAA 18 consensus_10853#3 ------------------------------------------------------------ consensus_10853#0 CCCCGACGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCTATCTCC 240 consensus_10853#1 TAAATGAATCGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGG 211 consensus_10853#4 ------------------------------------------------------------ consensus_10853#2 TTGCCATGCCACCCACGGGTCTTTTCATGTATTGACTTGTTGTTGGTGTATTTGGCGAAG 78 consensus_10853#3 ------------------------------------------------------------ consensus_10853#0 AGGTTAGCTCAGCCGGGTGTTGGATGTCCCGGTTCAAGCCTGTAGTCGTGCCTGGTAGGC 300 consensus_10853#1 TGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAG-CAAGGCG 270 consensus_10853#4 ------------------------------------------------------------ consensus_10853#2 TGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCG-ATATGTG 137 consensus_10853#3 ------AAACAGTTGCAGCCACCGAT-TCTCTGCGAACCCATTCGGCTCCAG-GAGTAAA 52 consensus_10853#0 AAATCCGCCGGGCTTAGATGAGGGGTGATAACGAGGCGGCTTGCCGCCGAAGTGAGTGAT 360 consensus_10853#1 TACTTGTGATGTCGAGAGAAGT----GGAGC--TTGTTGGTG-----GACTCGATATAAC 319 consensus_10853#4 ----------------AGAAGT----GGAGC--TTGTTGGTG-----GACTCGATATAAC 33 consensus_10853#2 GAGTTGCAATCGATGGAATGGTTTTGGTGAT--TTGTTGACGAGTTAGAATCGATGTAAA 195 consensus_10853#3 TCCCTTCACCTAATAGAGGCAC----ACCTT--CTTCCGAAGTTACGGTGTCCATTTGCC 106 consensus_10853#0 ACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGAC 420 * * * * * * consensus_10853#1 TGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGG 379 consensus_10853#4 TGGATAAGCAGTAAAAGGACTANACAAACATGACATTAGAATCT-TTCGTGAGTGAG--- 89 consensus_10853#2 TGAATCGTTGATATGTGGAGTTGCAGTATATTGTAT--GTGTGTATTGATGGGTATGGTG 253 consensus_10853#3 GAGTTCCTTCTCCAGAGTTCTCTCAAAGCG------------------------------ 136 consensus_10853#0 ACTGGTGCGCGAGATGGGTATTCTAAGGCGCTTGAGAGAACTCTGGAGAAGGAACTCGGC 480 * * consensus_10853#1 TGGGTCAGTGCCATGCTTATTC-------------------------------------- 401 consensus_10853#4 ------------------------------------------------------------ consensus_10853#2 GACAGGAGATAGTGAACCTATATATTGTGCT----------------------------- 284 consensus_10853#3 ------------------------------------------------------------ consensus_10853#0 AAATTGACACCGNTACTTCGGAAGAAGGTGTGCCTTTAGTAGGTGAACCCGTACAGGGGG 540 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||