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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1359 fasta sequence
[AGGGAATTGGCCTTGAGGCAGAATCGGCACGAGGGGCATTCAGCTGTATCGAAGGTTTAGAAGTTCACAAAAATCTTCAAAAACTTTGGCGCCTCCACTTAAACCTTTCACCCTAAGACCTCGTCGCTTTGCCCGCTTACTTCCCGTTTTGCCGACTGTATTTATTCTAATCGGTTATCTATCCATCTCTCTTGATCGTTCTCTAAAACTGGACAAATCCTCAGTTTCTTTTTTTGCGTTCTGCATAATAATGTCAGGATTGTTGCTTGGCTTGCTGAGTGTATTTAAAAATTTCTTGCTCAAATATCATGTTGCGTAAAAATGCTTAAGAAAAAGAAAAACAGTGAAGCATTCGGTATTTCAACCGCTCTTGTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTACCTCACATTGTAATTGAATATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACTCTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGCAGTATATGCTTTGGCTCACTAGCTTTGTGTTTAATTCGTTTACAAGACGCACGTGAATTATCCGAAGCTCAAAATTACCACACCTCACACTCAAAACATTCATACACAAATACTAATGCCCATACTACTAGCAATAGCCTTTTATTATTGGGGGAGATTAGACCAGATTCACAAGCTTCGTGTTATGTACCTCGAATGTTTCCTGTTCCAAGTTTATCATCCAATGCAAATTCTGCATCCAGTTTGCATAATTTGCTTTCATCTCCCAAGATATACAGTAAAATAGATTCTGAAGGCTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAAGAGTTTCAACGGAAAAGCAACCATTATTACAGGGGTCTTTTTACAACAAGTATGGTGGTCTAATGAGTACGGGTACTGGTCATCCGTCTTTATTGCCCTTAAGCAGAGTTCAGCTGGCTGCCGCCTCACAATCTTTACCGTTCAGTTCGTCATCAAGTGTAAATACCACAGGGAAATCGTCACAGTTCGATGCTGAAGAAAATGAAGTCAAAACTAACTCTTCTATAAATTCCACTCAATGTAAATAATAATCATAAAATGATAACTGAGTTCATCTTGCCTAAAATGTCTATTTTTATCAATTTTTCTCACATTTTATCTAGATCTATATTTCTCCACAGTATTCATTATCATTGATTTAAACTGAATTTTCCTGTTCAACTATCATGTTATTTTAAGTCTGAATATTGTTTTCGAGTGCTTATTTTACTTGGTACTTAAATAAAATATCA]
[+] EMBL CD083870 [AGGGAATTGGCCTTGAGGCAGAATCGGCACGAGGGGCATTCAGCTGTATCGAAGGTTTAGAAGTTCACAAAAATCTTCAAAAACTTTGGCGCCTCCACTTAAACCTTTCACCCTAAGACCTCGTCGCTTTGCCCGCTTACTTCCCGTTTTGCCGACTGTATTTATTCTAATCGGTTATCTATCCATCTCTCTTGATCGTTCTCTAAAACTGGACAAATCCTCAGTTTCTTTTTTTGCGTTCTGCATAATAATGTCAGGATTGTTGCTTGGCTTGCTGAGTGTATTTAAAAATTTCTTGCTCAAATATCATGTTGCGTAAAAATGCTTAAGAAAAAGAAAAACAGTGAAGCATTCGGTATTTCAACCGCTCTTGTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTACCTCACATTGTAATTGAATATTTCTTGATGTTAAC ]
[-] EMBL CD112356 [ AAGCATTCGGTATTTCAACCGCTCTTGTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTACCTCACATTGTAATTGAATATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACTCTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGCAGTATATGCTTTGGCTCACTAGCTTTGTGTTTAATTCGTTTACAAGACGCACGTGAATTATCCGAAGCTCAAAATTACCACACCTCACACTCAAAACATTCATACACAAATACTAATGCCCATACTACTAGCAATAGCCTTTTATTATTGGGGGAGATTA ]
[-] EMBL CD112566 [ AAGCATTCGGTATTTCAACCGCTCTTGTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTACCTCACATTGTAATTGAACATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACTCTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGCAGTATATGCTTTGGCTCACTAGCTTTGTGTTTAATTCGTTTACAAGACGCACGTGAATTATCCGAAGCTCAAAATTACCACACCTCACACTCAAAACATTCATACACAAATACTAATGCCCATACTACTAGCAATAGCCTTTTATTATTGGGGGAGATTA ]
[-] EMBL CD146899 [ TGCTTTGGCTCACTAGCTTTGTGTTTAATTCGTTTACAAGACGCACGTGAATTATCCGAAGCTCAAAATTACCACACCTCACACTCAAAACATTCATACACAAATACTAATGCCCATACTACTAGCAATAGCCTTTTATTATTGGGGGAGATTAGACCAGATTCACAAGCTTCGTGTTATGTACCTCGAATGTTTCCTGTTCCAAGTTTATCATCCAATGCAAATTCTGCATCCAGTTTGCATAATTTGCTTTCATCTCCCAAGATATACAGTAAAATAGATTCTGAAGGCTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAAGAGTTTCAACGGAAAAGCAACCATTATTACAGGGGTCTTTTTACAACAAGTATGGTGGTCTAATGAGTACGGGTACTGGTCATCCGTCTTTATTGCCCTTAAG ]
[+] EMBL CD097500 [ TAGACCAGATTCACAAGCTTCGTGTTATGTACCTCGAATGTTTCCTGCTCCAAGTTTATCATCCAATGCAAATTCTGCATCCAGTTTGCATAATTTGCTTTCATCTCCCAAGATATACAGTAAAATAGATTCTGAAGGCTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAAGAGTTTCAACGGAAAAGCAACCATTATTACAGGGGTCTTTTTACAACAAGTATGGTGGTCTAATGAGTACGGGTACTGGTCATCCGTCTTTATTGCCCTTAAGCAGAGTTCAGCTGGCTGCCGCCTCACAATCTTTACCGTT ]
[-] EMBL CD074669 [ ATCATCCAATGCAAATTCTGCATCCAGTTTGCATAATTTGCTTTCATCTCCCAAGATATACAGTAAAATAGATTCTGAAGGCTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAAGAGTTTCAACGGAAAAGCAACCATTATTACAGGGGTCTTTTTACAACAAGTATGGTGGTCTAATGAGTACGGGTACTGGTCATCCGTCTTTATTGCCCTTAAGCAGAGTTCAGCTGGCTGCCGCCTCACAATCTTTACCGTTCAGTTCGTCATCAAGTGTAAATACCACAGGGAAATCGTCACAGTTCGATGCTGAAGAAAATGAAGTCAAAACTAACTCTTCTATAAATTCCACTCAATGTAAATAATAATCATAAAATGATAACTGAGTTCATCTTGCCTAAAATGTCTATTTTTATCAATTTTTCTCACATTTTATCTAGATCTATATTTCTCCACAGTATTCATTATCATTGATTTAAACTGAATTTTCCTGTTCAACTATCATGTTATTTTAAGTCTGAATATTGTTTTCGAGTGCTTATTTTACTTGGTACTTAAATAAAATAT ]
[-] EMBL CD075088 [ TAAAATAGATTCTGAAGGCTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAAGAGTTTCAACGGAAAAGCAACCATTATTACAGGGGTCTTTTTACAACAAGTATGGTGGTCTAATGAGTACGGGTACTGGTCATCCGTCTTTATTGCCCTTAAGCAGAGTTCAGCTGGCTGCCGCCTCACAATCTTTACCGTTCAGTTCGTCATCAAGTGTAAATACCACAGGGAAATCGTCACAGTTCGATGCTGAAGAAAATGAAGTCAAAACTAACTCTTCTATAAATTCCACTCAATGTAAATAATAATCATAAAATGATAACTGAGTTCATCTTGCCTAAAATGTCTATTTTTATCAATTTTTCTCACATTTTATCTAGATCTATATTTCTCCACAGTATTCATTATCATTGATTTAAACTGAATTTTCCTGTTCAACTATCATGTTATTTTAAGTCTGAATATTGTTTTCGAGTGCTTATTTTACTTGGTACTTAAATAAAATAT ]
[-] EMBL AI975970 [ CATTGTCATCCATATAATCCATCTTCTGCAAGAGTTTCAACGGAAAAGCACGCATTATTACAGGGGTCTTTTTACAACAAGTATGGTGGTCTAATGAGTACGGGTACTGGTCATCCGTCTTTATTGCCCTTAAGCAGAGTTCAGCTGGCTACCGCCTCACAATCTTTACCGTTCAGTTCGTCATCAAGTGTAAATACCACAGGGAAATCGTCACAGTTCGATGCTGAAGAAAATGAAGTCAAAACTAACTCTTCTATAAATTCCACTCAATGTAAATAATAATCATAAAATGATAACTGAGTTCATCTTGCCTAAAATGTCTATTTTTATCAATTTTTCTCACATTTTATCTAGATCTATATTTCTCCACAGTATTCATTATCATTGATTTAAACTGAATTTTCCTGTTCAACTATCATGTTATTTTAAGTCTGAATATTGTTTTCGAGTGCTTATTTTACTTGGTACTTAAATAAAATATCA]
[+] EMBL CD079051 [ CGGAAAAGCAACCATTATTACAGGGGTCTTTTTACAACAAGTATGGTGGTCTAATGAGTACGGGTACTGGTCATCCGTCTTTATTGCCCTTAAGCAGAGTTCAGCTGGCTGCCGCCTCACAATCTTTACCGTTCAGTTCGTCATCAAGTGTAAATACCACAGGGAAATCGTCACAGTTCGATGCTGAAGAAAATGAAGTCAAAACTAACTCTTCTATAAATTCCACTCAATGTAAATAATAATCATAAAATGATAACTGAGTTCATCTTGCCTAAAATGTCTATTTTTATCAA TTTTCTCACATTTTATCTAGATCTATATTTCTCCACAGTATTCATTATCATTGATTTAAACTGAATTTTCCTGTTCAACTATCATGTTATTTTAAGTCTGAATATTGTTTTCGAGTGCTTATTTTACTTGGTACTTAAATAAAATATC ]
consensusID : consensus_10873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1302 fasta sequence
[ACAGGCCAAGATTCGGCACGAGGGCTACAGTGTATGCTACCAAATTTGCAATTTAGGTTACTATTTTACTTCAAATTTACGTAGGCGTTTAAAAGATTTATTTTTCAGGAAAGTGATTGTTTGTCTTGGTACTCTTGAAACTTGTTTTTCGATCTATAGATGGTCATTATTTTGAACTCTCCCCACATGATTCGTCTTAGATAGTATCATTCCACTTAGCAATAATAAACATGGGTCTATGGATAATTATATAAGCTTATATACGGTAAACATACTGCTCCTTCAAGTATTTGTTTCAGTTGTGCCTTTTGTTTTAGTGTTTCAAATAAGTTCTTTAAAATCGGAATATGTAGGTTTTGATTTTAAGAATATACGTCACTGCCTATTATCTCGACGGGATTTTTAAGATCAACCCAAATGTGTATACTAAATTTTTCCTAATTTTCAGGCATTCGGTATTTCAACCGCTCTTGTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTACCTCACATTGTAATTGAATATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACTCTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGCAGTATATGCTTTGGCTCA-CTAGCT-TTGTGT-TTAATT-CGTTTACAAGACGCACGTGAATTATCCGAAGCTCAAAATTACCACACCTCACACTCAAAACATTCATACACAAATACTAATGCCCATACTACTAGCAATAGCCTTTTATTATTGGGGGAGATTAGACCAGATTCACAAGCTTCGTGTTATGTACCTCGAATGTTTCCTGTTCCAAGTTTATCATCCAATGCAAATTCTGCATCCAGTTTGCATAATTTGCTTTCATCTCCCAAGATATACAGTAAAATAGATTCTGAAGGCTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAAGAGTTTCAACGGAAAAGCAACCATTATTACAGGGGTAAGTAAGCTATTCTAAATAGTTACTAAGGTTAGATTATTCTGCTGGCACAGATATAGAAGAAAACCACTGAGGATACATCTTANATGTAGCATATGAGAATAACGTTTTAATGCTCTCATATTATCATAGGATCGTACTCCATTTTTTCTAANATATGGTTATATCTTCTATCATCTCGAGATCATGAGATGTTAGATTTTAAACTGTTAACTTAGAAAAATTCAGTGAATCAGTTCTAACCGTGTTTACGGGATTATT]
[+] EMBL CD080744 [ACAGGCCAAGATTCGGCACGAGGGCTACAGTGTATGCTACCAAATTTGCAATTTAGGTTACTATTTTACTTCAAATTTACGTAGGCGTTTAAAAGATTTATTTTTCAGGAAAGTGATTGTTTGTCTTGGTACTCTTGAAACTTGTTTTTCGATCTATAGATGGTCATTATTTTGAACTCTCCCCACATGATTCGTCTTAGATAGTATCATTCCACTTAGCAATAATAAACATGGGTCTATGGATAATTATATAAGCTTATATACGGTAAACATACTGCTCCTTCAAGTATTTGTTTCAGTTGTGCCTTTTGTTTTAGTGTTTCAAATAAGTTCTTTAAAATCGGAATATGTAGGTTTTGATTTTAAGAATATACGTCACTGCCTATTATCTCGACGGGATTTTTAAGATCAACCCAAATGTGTATACTAAATTTTTCCTAATTTTCAGGCATTCGGTATTTCAACCGCTCTTGTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTACCTCACATTGTAATTGAATATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACTCTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGCAGTATATGCTTTGGCTCA CTAGCT TTGTGT TTAATT C ]
[+] EMBL CD078437 [ GTTGTCGTAATATGGTTTGTTAGCAGTATATGCTTTGGCTCA CTAGCT TTGTGT TTAATT CGTTTACAAGACGCACGTGAATTATCCGAAGCTCAAAATTACCACACCTCACACTCAAAACATTCATACACAAATACTAATGCCCATACTACTAGCAATAGCCTTTTATTATTGGGGGAGATTAGACCAGATTCACAAGCTTCGTGTTATGTACCTCGAATGTTTCCTGTTCCAAGTTTATCATCCAATGCAAATTCTGCATCCAGTTTGCATAATTTGCTTTCATCTCCCAAGATATACAGTAAAATAGATTCTGAAGGCTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAAGAGTTTCAACGGAAAAGCAACCATTATTACAGGGGTAAGTAAGCTATTCTAAATAGTTACTAAGGTTAGATTATTCTGCTGGCACAGATATAGAAGAAAACCACTGAGGATACATCTTANATGTAGCATATGAGAATAACGTTTTAATGCTCTCATATTATCATAGGATCGTACTCCATTTTTTCTAANATATGGTTATATCTTCTATCATCTCGAGATCATGA ]
[+] EMBL CD078426 [ GCTCACCTAGCTGTTGTGTCTTAATTGCGTTTACAAGACGCACGTGAATTATCCGAAGCTCAAAATTACCACACCTCACACTCAAAACATTCATACACAAATACTAATGCCCATACTACTAGCAATAGCCTTTTATTATTGGGGGAGATTAGACCAGATTCACAAGCTTCGTGTTATGTACCTCGAATGTTTCCTGTTCCAAGTTTATCATCCAATGCAAATTCTGCATCCAGTTTGCATAATTTGCTTTCATCTCCCAAGATATACAGTAAAATAGATTCTGAAGGCTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAAGAGTTTCAACGGAAAAGCAACCATTATTACAGGGGTAAGTAAGCTATTCTAAATAGTTACTAAGGTTATATTATTCTGCTGGCACAGATATAGAAGAAAACCACTGAGGATAC ]
[+] EMBL CD078928 [ AGAATAACGTTTTAATGCTCTCATATTATCATAGGATCGTACTCCATTTTTTCTAAAATATGGGTATATCTTCTATCATCTCGAGATCATGAGATGTTAGATTTTAAACTGTTAACTTAGAAAAATTCAGTGAATCAGTTCTAACCGTGTTTACGGGATTATT]
consensusID : consensus_10873#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 780 fasta sequence
[CCCTCGAGCCAANAATTCGGCACGAGGGTTTACGGGATTATTAATTTATCCAGTTTTTTTTTTAAAAAATGGTGTTATGTGGGAGATGAAGAACTAAATCATTTCAAAACACACATTGTGCAAAAATATGTATATAACGATTTGTTAAGTTGTTCAGAAAAACATTTCTGATTTGTTCAATAATGAAAAATATTCCTGTAGAAAGTCAGGAAATAAATAAATTTGACCATGTAAGCGGCAATAATCTTGCAATATAACTATTTATTTCAAAGCTCATATTTTTACATTTTTACACAAAATATATCTTTTGTGTATACAGTAATTATTTAATTATGCTTTAGTTGGATCTACTTTTTTACAGGTCTTTTTACAACAAGTATGGTGGTCTAATGAGTACGGGTACTGGTCATCCGTCTTTATTGCCCTTAAGCAGAGTTCAGCTGGCTGCCGCCTCACAATCTTTACCGTTCAGTTCGTCATCAAGTGTAAATACCACAGGGAAATCGTCACAGTTCGATGCTGAAGAAAATGAAGTCAAAACTAACTCTTCTATAAATTCCACTCAATGTAAATAATAATCATAAAATGATAACTGAGTTCATCTTGCCTAAAATGTCTATTTTTATCAATTTTTCTCACATTTTATCTAGATCTATATTTCTCCACAGTATTCATTATCATTGATTTAAACTGAATTTTCCTGTTCAACTATCATGTTATTTTAAGTCTGAATATTGTTTTCGAGTGCTTATTTTACTTGGTACTTAAATAAAATATCAT]
[+] EMBL CD080142 [CCCTCGAGCCAANAATTCGGCACGAGGGTTTACGGGATTATTAATTTATCCAGTTTTTTTTTTAAAAAATGGTGTTATGTGGGAGATGAAGAACTAAATCATTTCAAAACACACATTGTGCAAAAATATGTATATAACGATTTGTTAAGTTGTTCAGAAAAACATTTCTGATTTGTTCAATAATGAAAAATATTCCTGTAGAAAGTCAGGAAATAAATAAATTTGACCATGTAAGCGGCAATAATCTTGCAATATAACTATTTATTTCAAAGCTCATATTTTTACATTTTTACACAAAATATATCTTTTGTGTATACAGTAATTATTTAATTATGCTTTAGTTGGATCTACTTTTTTACAGGTCTTTTTACAACAAGTATGGTGGTCTAATGAGTACGGGTACTGGTCATCCGTCTTTATTGCCCTTAAGCAGAGTTCAGCTGGCTGCCGCCTCACAATCTTTACCGTTCAGTTCGTCATCAAGTGTAAATACCACAGGGAAATCGTCACAGTTCGATGCTGAAGAAAATGAAGTCAAAACTAACTCTTCTATAAATTCCACTCAATGTAAATAATAATCATAAAATGATAACTGAGTTCATCTTGCCTAAAATGTCTATTTTTATCAATTTTTCTCACATTTTATCTAGATCTATATTTCTCCACAGTATTCATTATCATTGATTTAAACTGAATTTTCCTGTTCAACTATCATGTTATTTTAAGTCTGAATATTGTTTTCGAGTGCTTATTTTACTTGGTACTTNAATAAAta ]
[+] EMBL CD078929 [ TTATGTGGGAGATGAAGAACTAAATCATTTCAAAACACACATTGTGCAAAAATATGTATATAACGATTTGCTAAGTTGTTCAGAAAAACATTTCTGATTTGTTCAATAATGAAAAATATTCCTGTAGAAAGTCAGGAAATAAATAAATTTGACCATGTAAGCGGCAATAATCTTGCAATATAACTATTTATTTCAAAGCTCATATTTTTACATTTTTACACAAAATATATCTTTTGCGTATACAGAAATTATTTAATTATGCTTTAGTTGGATCTACTTTTTTACAGGTCTTTTTACAACAAGTATGGTGGTCTAATGAGTACGGGTACTGGTCATCCGTCT ]
[-] EMBL CD073385 [ TAAGCGGCAATAATCTTGCAATATAACTATTTATTTCAAAGCTCATATTTTTACATTTTTACACAAAATATATCTTTTGTGTATACAGTAATTATTTAATTATGCTTTAGTTGGATCTACTTTTTTACAGGTCTTTTTACAACAAGTATGGTGGTCTAATGAGTACGGGTACTGGTCATCCGTCTTTATTGCCCTTAAGCAGAGTTCAGCTGGCTGCCGCCTCACAATCTTTACCGTTCAGTTCGTCATCAAGTGTAAATACCACAGGGAAATCGTCACAGTTCGATGCTGAAGAAAATGAAGTCAAAACTAACTCTTCTATAAATTCCACTCAATGTAAATAATAATCATAAAATGATAACTGAGTTCATCTTGCCTAAAATGTCTATTTTTATCAATTTTTCTCACATTTTATCTAGATCTATATTTCTCCACAGTATTCATTATCATTGATTTAAACTGAATTTTCCTGTTCAACTATCATGTTATTTTAAGTCTGAATATTGTTTTCGAGTGCTTATTTTACTTGGTACTTAAATAAAATATCA ]
[-] EMBL CD077173 [ ATTCCCCTCAATGTAAATAATATTCATAAAATGATAACTGAGTTCATCTTGCCTAAAATGTCTATTTTTATCAATTTTTCTCCCATTTTATCTAGATCTATATTTCTCCACAGTATTCATTATCATTGATTTAAACTGAATTTTCCTGTTCAACTATCATGTTATTTTAAGTCTGAATATTGTTTTCGAGTGCTTATTTTACTTGGTACTTAAATAAAATATCAT]
consensusID : consensus_10873#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 693 fasta sequence
[CAGATTTTCAGATGAACCTAATGAATATCGTTCTCTAAAACTGGACAAATCCTCAGTTTCTTTTTTTGCGTTCTGCATAATAATGTCAGGATTGTTGCTTGGCTTGCTGAGTGTATTTAAAAATTTCGCATTCGGTATTTCAACCGCTCTTGTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTACCTCACATTGTAATTGAATATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACTCTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGCAGTATATGCTTTGGCTCACTAGCTTTGTGTTTAATTCGTTTACAAGACGCACGTGAATTATCCGAAGCTCAAAATTACCACACCTCACACTCAAAACATTCATACACAAATAC-TA-ATGCCCATACTACTAGCAATAGCCTTTTATTATTGGGGGAGATTAGACCAGATTCACAAGCTTCGTGTTATGTACCTCGAATGTTTCCTGTTCCAAGTTTATCATCCAATGCAAATTCTGCATCCAGTTTGCATAA-TTTGCTTTCA-TCTCCCAAGATATACAGTAAAATAGATTCTGAAGGCTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAGAGTTTCA]
[+] EMBL CD081258 [CAGATTTTCAGATGAACCTAATGAATATCGTTCTCTAAAACTGGACAAATCCTCAGTTTCTTTTTTTGCGTTCTGCATAATAATGTCAGGATTGTTGCTTGGCTTGCTGAGTGTATTTAAAAATTTCGCATTCGGTATTTCAACCGCTCTTGTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTACCTCACATTGTAATTGAATATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACTCTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGCAGTATATGCTTTGGCTCACTAGCTTTGTGTTTAATTCGTTTACAAGACGCACGTGAATTATCCGAAGCTCAAAATTACCACACCTCACACTCAAAACATTCATACACAAATAC TA ATGCCCATACTACTAGCAATAGCCTTTTATTATTGGGGGAGATTAGACCAGATTCACAAGCTTCGTGTTATGTACCTCGAATGTTTCCTGTTCCAAGTTTATCATCCAATGCAAATTCTGCATCCAGTTTGCATAA TTTGCTTTCA TCTCCCAAGATATACAGTAAAATAGATTCTGAAGGCTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAGAGTTTCA]
[-] EMBL CD195079 [ ATTTCGCATTCGGTATTTCAACCGCTCTTGTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTACCTCACATTGTAATTGAATATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACTCTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGCAGTATATGCTTTGGCTCACTAGCGTTGTGTTTAATTCGTTTACAAGACGCACGTGAATTATCCGAAGCTCAAAATT ]
[-] EMBL CD117309 [ TTTATTACCTCACATTGTAATTGAATATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACTCTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGCAGTATATGCTTTGGCTCACTAGCTTTGTGTTTAATTCGTTTGCAAGACGCACGTGAATTATCCGAAGCTCAAAATTACCACACCTCACACTCAAAACATTCATACACAAATAC TA ATGCCCATACTACTAGCAATAGCCTTTTATTATTGGGGGAGATTAGACCAGATTCACAAGCTTCGTGTTATGTGCCTCGAATGTTTCCTGTTCCAAGTTTATCATCTAATGCAAATTCTGCATCCAGTTTGCATAA TTTGCTTTCA TCTCCCAAGATATACAGTAAAATAGATTCTGAAGGCTCTGTGAACTACCCTGTGCCCGTTGATCA ]
[-] EMBL CD072633 [ AATTATCCGAAGCTCAAAATTACCACACCTCACACTCAAAACATTCATACACAAATAC TA ATGCCCATACTACTAGCAATAGCCTTTTATTATTGGGGGAGATTA ]
[+] EMBL CD077757 [ gCATATTCGTAGATGCCCATACTACTAGCATTAGCCTTTTATTATTGGGGGAGATTAGACCAGATTCACAAGCTTCGTGTTATGTACCTCGAATGTTTCCTGTTCCAAGTTTATCATCCAATGCAAATTCTGCATCCAGTTTGCATAATTTTGCTTTCATTCTCCCAAGATA ]
consensusID : consensus_10873#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence
[TTTTTGAAGATTTTTGTGAACTTCTAAACCTTCGATACAGCTGAATGCTACAAATTCGAACACAAGTGTAATCTTGATTATCATTACTAGCACCCTGTTCATTTGAAACATACGCACCAGAATGAGCTGAGGAAGGCCGGTACACTATATCGTTACACAGCTGTAATGCCGTAATACTGGCCTCCTCCTCACTAACTGGAGCCAAAACACTAACATTATTAATTGGTGTATGTTCAGTCTGTGATGAAGATCCAAAAGGGGCATCAACATTTTGATAGCTATTATCCAATACATCTGAATTCCATGGTTCGTTAACAAGAACAGTTGTAGAATT]
[+] EMBL CD201173 [TTTTTGAAGATTTTTGTGAACTTCTAAACCTTCGATACAGCTGAATGCTACAAATTCGAACACAAGTGTAATCTTGATTATCATTACTAGCACCCTGTTCATTTGAAACATACGCACCAGAATGAGCTGAGGAAGGCCGGTACACTATATCGTTACACAGCTGTAATGCCGTAATACTGGCCTCCTCCTCACTAACTGGAGCCAAAACACTAACATTATTAATTGGTGTATGTTCAGTCTGTGATGAAGATCCAAAAGGGGCATCAACATTTTGATAGCTATTATCCAATACATCTGAATTCCATGGTTCGTTAACAAGAACAGTTGTAGAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10873#1 ACAGGCCAAGATTCGGCACGAGGGCTACAGTGTATGCTACCAAATTTGCAATTTAGGTTA 60
consensus_10873#3 ------------------------------------------------------------
consensus_10873#0 ------------------------------------------------------------
consensus_10873#2 ------------------------------------------------------------
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 CTATTTTACTTCAAATTTACGTAGGCGTTTAAAAGATTTATTTTTCAGGAAAGTGATT-G 119
consensus_10873#3 ------------------------------------------------------------
consensus_10873#0 ------------------AGGGAATTGGCCTTGAGGCAGAATCGGCACGAGGGGCATTCA 42
consensus_10873#2 ------------------------------------------------------------
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 TTTGTCTTGGTACTCTTGAAACTTGTTTTTCGATCTATAGATGGTCATTATTTTGAACTC 179
consensus_10873#3 ------------------------------------------------------------
consensus_10873#0 GCTGTATCGAAGGTTTAGAAGTTCAC----------AAAAATCTTCAAAAACTTTGGCGC 92
consensus_10873#2 ------------------------------------------------------------
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 TCCCCACATGATTCGTCTTAGATAGTATCATTCCACTTAGCAATAATAAACATGGGTCTA 239
consensus_10873#3 ------------------------------------------------------------
consensus_10873#0 -CTCCACTTAAACCTTTCACCCTAAGACCTCGTCGCTTTGCCCGCTTACTTCCCGTTTTG 151
consensus_10873#2 --CCCTCGAGCCAANAATTCGGCACGAGGGTTTACGGGATTATTAATTTATCCAGTTTTT 58
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 TGGATAATTATATAAGCTTATATACGGTAAACATACTGCTCCTTCAAGTATTTGTTTCAG 299
consensus_10873#3 ------------------------------------------------------------
consensus_10873#0 CCGAC---TGTATTTATTCTAATCGGTTATCTATCCATCTCTCTTGATCGTTCTCTAAAA 208
consensus_10873#2 TTTTTA---AAAAATGGTGTTATGTGGGAGATGAAGAACTAAATCA-------TTTCAAA 108
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 TTGTGC---CTTTTGTTTTAGTGTTTCAAATAA-GTTCTTTAAAATCGGAATATGTAGGT 355
consensus_10873#3 --CAGA---TTTTCAGATGAACCTAATGAATATCGTTCTCTAAAACTGGA-----CAAAT 50
consensus_10873#0 CTGGACAAATCCTCAGTTTCTTTTTTTGCGTTCTGCATAATAATGTCAGGAT---TGTTG 265
consensus_10873#2 ACACAC---ATTGTGCAAAAATATGT-ATATAACGATTTGTTAAGTTGTT-----CAGAA 159
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 TTTGATTTTAAGAATATACGTCACTGCCTATTATCTCGACGGGATTTTTAAGATCAACCC 415
consensus_10873#3 CCTCAGTTTCTTTTTTTGCGTT-CTGCATAATAAT--GTCAGGATTGTT--GCTTGGCTT 105
consensus_10873#0 CTTGGCTTGCTGAGTGTATTTAAAAATTTCTTGCTCAAATATCATGTTG--CGTAAAAAT 323
consensus_10873#2 AAACATTTCTGATTTGTTCAATAATGAAAAATATTCCTGTAGAAAGTCAGGAAATAAA-T 218
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 AAATGTGTATACTAAATTTTTCCTAATTTTCAGGCAT---TCGGTATTTCAACCGCTCTT 472
consensus_10873#3 GC-TGAGTGTATTTAA--------AAATTTC--GCAT---TCGGTATTTCAACCGCTCTT 151
consensus_10873#0 GCTTAAGAAAAAGAAA--------AACAGTGAAGCAT---TCGGTATTTCAACCGCTCTT 372
consensus_10873#2 AAATTTGACCATGTAAGCGGCAATAATCTTGCAATATAACTATTTATTTCAAA-GCTCAT 277
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 GTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTA 532
consensus_10873#3 GTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTA 211
consensus_10873#0 GTTGGTTTTTACGTTACATTATGCTGTACAAGTTTTTTTCTCATACCAAGCTGTTTATTA 432
consensus_10873#2 ATT----TTTACATT--TTTACACAAAATATATCTTTTGTGTATAC---AGTAATTATTT 328
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 CCTCACATTGTAATTGAATATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACT 592
consensus_10873#3 CCTCACATTGTAATTGAATATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACT 271
consensus_10873#0 CCTCACATTGTAATTGAATATTTCTTGATGTTAACCTGTTTTGATATAAGACTACGTACT 492
consensus_10873#2 AATTATGCTTTAGTTGGATCTACTTTTTTACAGGTCT-TTTTACAACAAGTATGGTGGTC 387
consensus_10873#4 --------------------------------------TTTTTGAAGATTTTTGTGAACT 22
**** * * *
consensus_10873#1 CTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGC 652
consensus_10873#3 CTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGC 331
consensus_10873#0 CTACGCATCCAGTTCTATGGTCAATATGATGTTATTGTTGTCGTAATATGGTTTGTTAGC 552
consensus_10873#2 TAATGAGTACGGGTAC-TGGTCA-TCCGTCTTTATTGCCCTTAAGCAGAGTTCAGCTGGC 445
consensus_10873#4 TCTAAACCTTCGATACA-GCTGAATGCTACAAATTCGAACACAAGTGTAATCTTGATTAT 81
* * * * * * * * * *
consensus_10873#1 AGTATATGCTTTGGCTCACTAGCTTTGT-GTTTAATTCGTTTACAAGACGCACGTGAATT 711
consensus_10873#3 AGTATATGCTTTGGCTCACTAGCTTTGT-GTTTAATTCGTTTACAAGACGCACGTGAATT 390
consensus_10873#0 AGTATATGCTTTGGCTCACTAGCTTTGT-GTTTAATTCGTTTACAAGACGCACGTGAATT 611
consensus_10873#2 TGC--------CGCCTCACAATCTTTACCGTTCAGTTCGTCATCAAG-----TGTAAATA 492
consensus_10873#4 CA-------------TTACTAGCACCCT-GTTCATTTGAAACATACG---CACCAGAATG 124
* ** * * *** * ** * * ***
consensus_10873#1 ATCCGAAGCTCAAAATTACCACACCTC-ACACT-CAAAACATTCATACACAAATACTAAT 769
consensus_10873#3 ATCCGAAGCTCAAAATTACCACACCTC-ACACT-CAAAACATTCATACACAAATACTAAT 448
consensus_10873#0 ATCCGAAGCTCAAAATTACCACACCTC-ACACT-CAAAACATTCATACACAAATACTAAT 669
consensus_10873#2 CCACAGGG----AAATCGTCACAGTTCGATGCT-GAAGAAAAT--------GAAGTCAAA 539
consensus_10873#4 AGCTGAGG---AAGGCCGGTACACTATATCGTTACACAGCTGTAATGCCGTAATACTGGC 181
* * *** * * * *
consensus_10873#1 GCCCATACTACTAGCAATAGCCTTT-TATTATTGGGGGAGATTAGACCAGATTCACAAGC 828
consensus_10873#3 GCCCATACTACTAGCAATAGCCTTT-TATTATTGGGGGAGATTAGACCAGATTCACAAGC 507
consensus_10873#0 GCCCATACTACTAGCAATAGCCTTT-TATTATTGGGGGAGATTAGACCAGATTCACAAGC 728
consensus_10873#2 ACTAACTCTTCTATAAATT-CCACT-CAATGTAAATAATAATCATAAAATGATAACTGAG 597
consensus_10873#4 CTCCTCCTCACTAACTGGAGCCAAAACACTAACATTATTAATTGGTGTATGTTCA----G 237
*** ** * * ** * * *
consensus_10873#1 TTCGTGTTATGTACCTCGAATGTTTCCTGTTCCAAGTTTATCATCCAATGCAAATTCTGC 888
consensus_10873#3 TTCGTGTTATGTACCTCGAATGTTTCCTGTTCCAAGTTTATCATCCAATGCAAATTCTGC 567
consensus_10873#0 TTCGTGTTATGTACCTCGAATGTTTCCTGTTCCAAGTTTATCATCCAATGCAAATTCTGC 788
consensus_10873#2 TTCATCTTG----CCTAAAATGTCTATTTTTATCAATTTTTCTCACATTTTA---TCTAG 650
consensus_10873#4 TCTGTGATGAAGATCCAAAAGG---GGCATCAACATTTTGATAGCTATTATCCA--ATAC 292
* * * * ** * * * *** * * *
consensus_10873#1 ATCCAGTTTGCATAATTTGCTTTCATCTCCCAAGATATACAGTAAAATAGATTCTGAAGG 948
consensus_10873#3 ATCCAGTTTGCATAATTTGCTTTCATCTCCCAAGATATACAGTAAAATAGATTCTGAAGG 627
consensus_10873#0 ATCCAGTTTGCATAATTTGCTTTCATCTCCCAAGATATACAGTAAAATAGATTCTGAAGG 848
consensus_10873#2 ATCTATATTTCTCCACA-GTATTCATTATCATTGATTTAAACTGAATTTTCCTGTTCAAC 709
consensus_10873#4 ATCTGAATTCCATGGTTCGTTAACAAGAAC--AGTTGTAGAATT---------------- 334
*** ** * * ** * * * ** * *
consensus_10873#1 CTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAAG 1008
consensus_10873#3 CTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCA-G 686
consensus_10873#0 CTCTGTGAACTACCCTGTGCCCGTTGATCATTGTCATCCATCTAATCCATCTTCTTCAAG 908
consensus_10873#2 TATCATG--TTATTTTAAGTC---TGAATATTGTTTTCGAGT--GCTTATTTTACTTG-G 761
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 AGTTTCAACGGAAAAGCAACCATTATTACAGGGGT-----------AAGTAAGCTATTCT 1057
consensus_10873#3 AGTTTCA----------------------------------------------------- 693
consensus_10873#0 AGTTTCAACGGAAAAGCAACCATTATTACAGGGGTCTTTTTACAACAAGTATGGTGGTCT 968
consensus_10873#2 TACTTAAATAAAATATCAT----------------------------------------- 780
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 AAATAGTT--ACTAAGGTTAGATTATTCTGCTGGCACAGATATAGAAGAAAACCA-CTGA 1114
consensus_10873#3 ------------------------------------------------------------
consensus_10873#0 AATGAGTACGGGTACTGGTCATCCGTCTTTATTGCCCTTAAGCAGAGTTCAGCTGGCTGC 1028
consensus_10873#2 ------------------------------------------------------------
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 GGATACATCTTANATGTAG--CATATGAGAATAACGTTTTAATGCTCTC---ATATTATC 1169
consensus_10873#3 ------------------------------------------------------------
consensus_10873#0 CGCCTCACAATCTTTACCGTTCAGTTCGTCATCAAGTGTAAATACCACAGGGAAATCGTC 1088
consensus_10873#2 ------------------------------------------------------------
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 ATAGGATCGTACTCCATTTTTTCTAANATATGGTTATATCTTCTATCATCTCGAGATCAT 1229
consensus_10873#3 ------------------------------------------------------------
consensus_10873#0 ACAGTTCGATGCTGAAGAAAATG-AAGTCAAAACTAACTCTTCTATAAATTCCACTCAAT 1147
consensus_10873#2 ------------------------------------------------------------
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 GAGATGTTAGATTTTAAACTGTTAACTTAGAAAAATTCAGTGAA-----TCAGTTCTAAC 1284
consensus_10873#3 ------------------------------------------------------------
consensus_10873#0 GTAAATAATAATCATAAAATGATAACTGAGTTCATCTTGCCTAAAATGTCTATTTTTATC 1207
consensus_10873#2 ------------------------------------------------------------
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 CGTGTTTACGGGATTATT------------------------------------------ 1302
consensus_10873#3 ------------------------------------------------------------
consensus_10873#0 AATTTTTCTCACATTTTATCTAGATCTATATTTCTCCACAGTATTCATTATCATTGATTT 1267
consensus_10873#2 ------------------------------------------------------------
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 ------------------------------------------------------------
consensus_10873#3 ------------------------------------------------------------
consensus_10873#0 AAACTGAATTTTCCTGTTCAACTATCATGTTATTTTAAGTCTGAATATTGTTTTCGAGTG 1327
consensus_10873#2 ------------------------------------------------------------
consensus_10873#4 ------------------------------------------------------------
consensus_10873#1 --------------------------------
consensus_10873#3 --------------------------------
consensus_10873#0 CTTATTTTACTTGGTACTTAAATAAAATATCA 1359
consensus_10873#2 --------------------------------
consensus_10873#4 --------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||