These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1557 fasta sequence [GTATGGCACATTATCATGCTGCTCACTTCATAGGTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGTCAAGATGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGAAAGCAGGG-AAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACCTAGTCAGTGAAG-AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGTGGTATGTTCTGATCTATCCATCGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGCAATA-GCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT-AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCAGCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTGTATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTA-TTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGATTGT] [+] EMBL CD142450 [GTATGGCACATTATCATGCTGCTCACTTCATAGGTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGTCAAGATGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGAAAGCAGGG AAATATCANAAGATTTGGCGTACTACCGNTCGTGCTT ] [+] EMBL CD142467 [ GTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGTCAAGATGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGAAAGCAGGG AAATATCANAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATC ] [+] EMBL CD142333 [ CTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGCCAAGACGGACTCATGcata ] [-] EMBL CD198574 [ AAGAGGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGGAAGCAGGG AAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACCTAGTCAGTGAAG AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAGATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAA ] [+] EMBL CD083106 [ AGCAGGG AAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACCTAGTCAGTGAAG AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACACTNTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGTGGTATGTTCTGATCTA ] [+] EMBL CD081886 [ gAGCAGGGNAAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACCTAGTCAGTGAAG AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACACTTTGCTGCGTTNATAGACGTTNTCACA ] [-] EMBL CD168267 [ GCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACGGACCTAGTCAGTGAAGAAAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGT ] [-] EMBL CD142473 [ GGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACCTAGTCAGTGAAG AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACCTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAA ] [-] EMBL CD142309 [ AATC TATGCCTCATTCATAAGACAGACCTAGTCAGTGAAG AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAACCCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAA ] [-] EMBL CD119461 [ taTTCAAGTCAGAAGGCANAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACA TAAAAGAAATTGCTTGTAAAAAAAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAAAACAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACTCTTTGCTGCGTTTATAGACGgt ] [+] EMBL CD077464 [ AGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCANATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTG ] [-] EMBL CD142347 [ TTCCCTGGTTC TATTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAA ] [-] EMBL CD119385 [ TTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATCAAGTGATTCTATTCGAAAGAGCAGCAAAAATGAAAATTGCTTAACATAATAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAAATCAAATTGTCATGTAGTAAAGATGGAGCAAATTTCTCGAAGAGTGAA ] [+] EMBL CD080041 [ CTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGTGGTATGTTCTGATCTATCCATCGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGCAATANGCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTATTACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTTAAAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGNCTCTAATTCTTTACTGGTGNCGAACTT CATCTTTACATC ACTTTTG AATATTC AC AAATGCCCATCG TTTTCATCG ACA TTTTAG AATATNCATCCAAGT GATCAGC CGTAAAAAtt ] [+] EMBL CD192015 [ TGAACTGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGTGGTATGTTCTGATCTATCCATCGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGCAATA GCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAAT ] [-] EMBL AW017143 [ TGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGTGGTATGTTCTGATCTATCCATCGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGATCAACCACATTCGGCAATA GCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTAACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGA ] [-] EMBL CD074085 [ GGAANAATTAGAACAACCACATTCGGCAATA GCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCAGCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTGTATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTA TTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGAT ] [-] EMBL CD075660 [ AAAAATTAGAACAACCACATTCGGCAATA GCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCAGCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTGTATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTA TTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGAT ] [-] EMBL CD074781 [ AGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCAGCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTGTATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTA TTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGATTGT] [-] EMBL CD076680 [ ctgtTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCAGCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTGTATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTA TTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGAT ] [-] EMBL CD075593 [ TGACTTTTGA TTTTATGAGCTATTTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGAT ] consensusID : consensus_10883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1073 fasta sequence [CCCTCGNAGGCCAANAATTCGGCACGAGGAAAGCAGATGTACCTTTCGAGTGTATAAAACTCAGTAACCACTTTTGCCAATTGATATTGCAGGTCGTGTACAAAAAACTTGTCTATCATTTCTGATTTTTACAAGCGTTCCTAATTTCATTATAATTACTATTATGATAGTATGAGCGATCGGAGATATGTCTCGTATTGCCCATTAGGTTTCAAATGACTTACTAAATGATTTACATCAATTTTATTTTACGAATGTTGGATATTTCGCAGTTTGTTTTAAATCCATGTCCTTCCGGTTTTTTTCAGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGCAATAGCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTNTAAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAATTTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGNCTCTAATTCTTTACTGTTGTCGAACTTNCATCTTTACATCCAACTTTTGAATATTCACAAATGCCCATCGNTNTCATCGACATTTTTAGTATATTCATTCAGTAGATCAGACGTAAAACATTNTGCTTGATACACACCTAGTATGNTCAACAGTTTGATCTGCTTGAATGCTAACGATNCCGACTTGATTTAGACTATTCTATATGTTACGGTATCTTTCACCTACTGATGAATGCCATATGTGATGATGTATAAAAAAAACGCTGCGCAGCTTCTTTAGTATTATGCGCGGTTACNGAGGACGGTCCATACTCACTCCGGATAAGCACTCTCCAGGACTGCTNCGGGGCCCCACCCCTCTTCTCTGCGTGGCAGGGGGG] [+] EMBL CD082047 [CCCTCGNAGGCCAANAATTCGGCACGAGGAAAGCAGATGTACCTTTCGAGTGTATAAAACTCAGTAACCACTTTTGCCAATTGATATTGCAGGTCGTGTACAAAAAACTTGTCTATCATTTCTGATTTTTACAAGCGTTCCTAATTTCATTATAATTACTATTATGATAGTATGAGCGATCGGAGATATGTCTCGTATTGCCCATTAGGTTTCAAATGACTTACTAAATGATTTACATCAATTTTATTTTACGAATGTTGGATATTTCGCAGTTTGTTTTAAATCCATGTCCTTCCGGTTTTTTTCAGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGCAATAGCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTNTAAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAATTTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGNCTCTAATTCTTTACTGTTGTCGAACTTNCATCTTTACATCCAACTTTTGAATATTCACAAATGCCCATCGNTNTCATCGACATTTTTAGTATATTCATTCAGTAGATCAGACGTAAAACATTNTGCTTGATACACACCTAGTATGNTCAACAGTTTGATCTGCTTGAATGCTAACGATNCCGACTTGATTTAGACTATTCTATATGTTACGGTATCTTTCACCTACTGATGAATGCCATATGTGATGATGTATAAAAAAAACGCTGCGCAGCTTCTTTAGTATTATGCGCGGTTACNGAGGACGGTCCATACTCACTCCGGATAAGCACTCTCCAGGACTGCTNCGGGGCCCCACCCCTCTTCTCTGCGTGGCAGGGGGG] consensusID : consensus_10883#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [GGAATGAGGAAGAAAGTCTTGTTGATGGGGAAATCTGGTTCTATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGTCAAGATGGATTCATGGAAAGCTATTTNNNNNNNNNNNNAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGAAAGCAGGGAAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATNNNNNNNNCCTAGTCAGTGAAGAAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAATAAGC] [+] EMBL CD080948 [GGAATGAGGAAGAAAGTCTTGTTGATGGGGAAATCTGGTTCTATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGTCAAGATGGATTCATGGAAAGCTATTTNNNNNNNNNNNNAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGAAAGCAGGGAAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATNNNNNNNNCCTAGTCAGTGAAGAAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAATAAGC] consensusID : consensus_10883#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [GTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTCCTAAATTTATGGGATTGCGGGGGGTAAATCTGTCAAATACTTATCTATTTTCCATAGTCAAGATGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACATATTCAGAAATGTTGAGGTCTTAATCTATNGTTTCGATATTGAAAGCA] [+] EMBL CD142321 [GTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTCCTAAATTTATGGGATTGCGGGGGGTAAATCTGTCAAATACTTATCTATTTTCCATAGTCAAGATGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACATATTCAGAAATGTTGAGGTCTTAATCTATNGTTTCGATATTGAAAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 ------------------------------------------------------------ consensus_10883#1 CCCTCGNAGGCCAANAATTCGGCACGAGGAAAGCAGATGTACCTTTCGAGTGTATAAAAC 60 consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 ----------------------------GTATGGCACATTATCATGCTGCTCACTTCATA 32 consensus_10883#1 TCAGTAACCACTTTTGCCAATTGATATTGCAGGTCGTGTACAAAAAACTTGTCTATCATT 120 consensus_10883#2 --------GGAATGAGGAAGAAAGTCTTGTTGATGGGGAAATCTGG----TTCTATTTGC 48 consensus_10883#3 -GTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGC 59 consensus_10883#0 GGTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGC 92 consensus_10883#1 TCTGATTTTTACAAGCGTTCCTAATTTCATTATAATTACTATTATGATAGTATGAGCGAT 180 * * ** * * consensus_10883#2 AAACTTTATCGCTCGAGATACTCGC-AGGCTTG----GTCCTAC-AATGGACGTAGAACA 102 consensus_10883#3 AAACTTTATCGCTCGAGATACTCGC-AGGCTTG----GTCCTAC-AATGGACGTAGAACA 113 consensus_10883#0 AAACTTTATCGCTCGAGATACTCGC-AGGCTTG----GTCCTAC-AATGGACGTAGAACA 146 consensus_10883#1 CGGAGATATGTCTCGTATTGCCCATTAGGTTTCAAATGACTTACTAAATGATTTACATCA 240 *** **** * * * *** ** * * *** ** ** ** * ** consensus_10883#2 CACTCACCT-ACGACTGCTAGGTG------GATTGGTTCTAAATTTATGGGATTGCGGGG 155 consensus_10883#3 CACTCACCT-ACGACTGCTAGGTG------GATTGGTCCTAAATTTATGGGATTGCGGGG 166 consensus_10883#0 CACTCACCT-ACGACTGCTAGGTG------GATTGGTTCTAAATTTATGGGATTGCGGGG 199 consensus_10883#1 ATTTTATTTTACGAATGTTGGATATTTCGCAGTTTGTTTTAAATCCATGTCCTTCCGGTT 300 * * * **** ** * * * ** ** ***** *** ** *** consensus_10883#2 G----------------------------------TCAAGATGGATTCATGGAA---AGC 178 consensus_10883#3 GGTAAATCTGTCAAATACTTATCTATTTTCCATAGTCAAGATGGATTCATGGAA---AGC 223 consensus_10883#0 G----------------------------------TCAAGATGGATTCATGGAA---AGC 222 consensus_10883#1 TTT--TTCAGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAA 358 ** *** * * * * consensus_10883#2 TATTTNNNNNNNNNNNNAGAAACAATATTCAGAAATGTTGAGGTCT---TAATCTATGTT 235 consensus_10883#3 TATTTCGTCAACCAAAGAGAAACA-TATTCAGAAATGTTGAGGTCT---TAATCTATNGT 279 consensus_10883#0 TATTTCGTCAACCAAAGAGAAACAATATTCAGAAATGTTGAGGTCT---TAATCTATGTT 279 consensus_10883#1 TATTTGGAAAAATTAGAACAACCA-CATTCGGCAATAGCTCGTTGTGGCTAGACACTTGT 417 ***** * ** ** **** * *** * * * ** * * * consensus_10883#2 TTCGATAT--TGAAAGCAGGGAAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGG 293 consensus_10883#3 TTCGATAT--TGAAAGCA------------------------------------------ 295 consensus_10883#0 TTCGATAT--TGAAAGCAGGGAAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGG 337 consensus_10883#1 TTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAG 477 ** *** * *** ** consensus_10883#2 ATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATNNNNNNNNCC 353 consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 ATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACC 397 consensus_10883#1 TATGACTGTATATTGAATTGCTTATTTTTAA---TTTAAAACATGGTCATCGTAATACGT 534 consensus_10883#2 TAGTCAGTGAAGAAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAG 413 consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 TAGTCAGTGAAGAAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAG 457 consensus_10883#1 CAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTNTAAGAAGTTG 594 consensus_10883#2 TTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTA 473 consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 TTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTA 517 consensus_10883#1 TGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAATTTTTTCTG 654 consensus_10883#2 AAGCTTGGTCTAAAATTGTT------------------------------GAAGGTAGTT 503 consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 AAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTT 577 consensus_10883#1 TTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGNCTCTAATTCTTTACTGTTGTC 714 consensus_10883#2 TAAA--GCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAAC 561 consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 TAAA--GCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAAC 635 consensus_10883#1 GAACTTNCATCTTTACATCCAACTTTTGAATATTCACAAATGCCCATCGNTNTCATCGAC 774 consensus_10883#2 ATTTTTGGAAATTGCTT---GTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGA 618 consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 ATTTTTGGAAATTGCTT---GTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGA 692 consensus_10883#1 ATTTTTAGTATATTCATTCAGTAGATCAGACGTAAAACATTNTGCTTGATACACACCTAG 834 consensus_10883#2 GAAATAAGC--------------------------------------------------- 627 consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 GAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTT 752 consensus_10883#1 TATGNTCAACAGTTTGATCTGCTTGAATGCTAACGATNCCGACTTGATTTAGACTATTCT 894 consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 CACGAAGATTGAACTGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAA 812 consensus_10883#1 ATATGTTACGGTATCTTTCACCTACTGATGAATGCCATATGTGATGATGTATAAAAAAAA 954 consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 TACATACATTATGGTGGTATGTTCTGATCTATCCATCGCCTCTTCTGCAACTTTGCTGAA 872 consensus_10883#1 CGCTGCGCAGCTTCTTTAGTATTATGCGCGGTTACNGAGGACGGTCCATACTCACTCCGG 1014 consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 TATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGC 932 consensus_10883#1 ATAAGCACTCTCCAGGACTGCTNCGGGGCCCCACCCCTCTTCTCTGCGTGGCAGGGGGG- 1073 consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 AATAGCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATG 992 consensus_10883#1 ------------------------------------------------------------ consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 AGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATT 1052 consensus_10883#1 ------------------------------------------------------------ consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 TAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAAT 1112 consensus_10883#1 ------------------------------------------------------------ consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 GAATTGTACATTTTTAAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTG 1172 consensus_10883#1 ------------------------------------------------------------ consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 ATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATAT 1232 consensus_10883#1 ------------------------------------------------------------ consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 AGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTC 1292 consensus_10883#1 ------------------------------------------------------------ consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 AACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCA 1352 consensus_10883#1 ------------------------------------------------------------ consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 GCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTG 1412 consensus_10883#1 ------------------------------------------------------------ consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 TATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTATTT 1472 consensus_10883#1 ------------------------------------------------------------ consensus_10883#2 ------------------------------------------------------------ consensus_10883#3 ------------------------------------------------------------ consensus_10883#0 TTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTG 1532 consensus_10883#1 ------------------------------------------------------------ consensus_10883#2 ------------------------- consensus_10883#3 ------------------------- consensus_10883#0 CATAATTATGTTGATAATTGATTGT 1557 consensus_10883#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||