These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 928 fasta sequence [TCGCTACAATATGTATCCGAATCAGGG-A-CTTATGTTTAATGAG-TTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTT-CAGCTTCTTAAAGAGGCTCCAGATGGAATTTTG-GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC-TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG-ATTTCAA-CTA-CAATCTGGATGATACAGAA-GGTGTTTGCGAT-TTATTTGATATTCCTGTTATCTCCACATCTACCAA-CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT-ATAT-AATAAGT] [+] EMBL CD153578 [TCGCTACAATATGTATCCGAATCAGGG A CTTATGTTTAATGAG TTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTT CAGCTTCTTAAAGAGGCTCCAGATGGAATTTTG GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAACGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAACAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAG ] [+] EMBL CD153620 [TCGCTACAATATGTATCCGAATCAGGC A CTTATGTTTAATGAG TTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTT CAGCTTCTTAAAGAGGCTCCAGATGGAATTTTG GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTCGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATTATCTG ] [+] EMBL BF936252 [ AATATGTATCCGAATCATGG A CTTTTGTTTAATGAG TTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTGTGCT CAGCTTCTTAAAGAGGCTCCAGATGGAATTTTG GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAACACCTGGTCCTGAAAATCCTATG ] [+] EMBL CD081213 [ ATGTATCCGACTCAGGGNACCTTATGTTTAATGAGNTTCCCACTANATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTNCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTG GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAANCTA C ATCTGGATGATACAGAAGGGTGTTTGCGAA TTATTTGATATTCCTGTTATCTCCACATCTACCAANCT ACTATTTATTGTACGCTTTCTATANNAC AT AGACAT ATTT AATA ] [+] EMBL CD081153 [ gccgacgccGATGGAATTTTGNGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGTAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTNTCTATTAAACAAT AGACAT ATATAAATAAG ] [-] EMBL CD074970 [ ATTTTG GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA AAAACTATTTATTGTACGCTTTCTATAAATCAATAAGACATAATA AATAAG ] [-] EMBL CD075044 [ AATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAG ATAACTATTTATTGTACGCTTTCTATAAATCAATAAGACAT ATTA AATAAG ] [-] EMBL CD074907 [ AANCAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT ATA ] [-] EMBL CD076710 [ ATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGANAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT ATA ] [-] EMBL CD076429 [ CTGGAAATAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTTTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCCCAACCCCTATTCACGTTTTGTTGGTAAATCAAAAAAAGGGTAGTGACAAAGTTTGTGTACTCCCAGTGCCAGCAAATTGGGACTTTATTGCTTTCGCTTGTGGTCCCGCCC TGAAATTTAATGAAAAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCCCCTCCCAGTGAATGTG ATTTCAA CTC CAATTTGGATGATACAAAA GGGGTTTGCGAT TTATTTGATATTCCTGTTATTTCCACATTTACCAA CTAACTATTTATTGTACGCTTTTTATAAAACAATAAGACAT ATATAAATAAGT] [+] EMBL AI764813 [ ATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCCTTGAAATCTTATGAAGAGAAAGCATTTGTGAGTCTATTATTNGCACTCAGTCTACCTCTCARTGTATGTGTATTTC A CTATCAATCT ] [+] EMBL AI740341 [ ACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT AT ] [+] EMBL AI740369 [ ACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT AT ] [+] EMBL AI740352 [ ACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT A ] [+] EMBL AI740357 [ ACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTGCATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGg ] [-] EMBL CD076880 [ GTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGATCTTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT ATA ] consensusID : consensus_10890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 854 fasta sequence [CTCCAGGCCAGAATTTGGCACGAGGCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCCTGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTGATTTCAACTACATCTGGATGATACAGAANGGTGTTGCGATTTATTTGATATTCCTGTTATCTCACATCTACCAAACTACTATTATGACGCTTTCTTANNACATAGACA] [+] EMBL CD081085 [CTCCAGGCCAGAATTTGGCACGAGGCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCCTGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTGATTTCAACTACATCTGGATGATACAGAANGGTGTTGCGATTTATTTGATATTCCTGTTATCTCACATCTACCAAACTACTATTATGACGCTTTCTTANNACATAGACA] [+] EMBL CD095988 [ CTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAGGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAGGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACANAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTG ] [+] EMBL CD096066 [ CTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTG ] [-] EMBL CD180463 [ gGTGCAGCTACAAATGGACCTGATACTCTAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCAAGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGC ] [+] EMBL CD095826 [ ACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTG ] [-] EMBL CD141978 [ GCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGC ] consensusID : consensus_10890#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence [AANAATTCGGCACGAGGGCCGAATCAGGNACTTATGTTTAATGAGTTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACCAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTNTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAG] [+] EMBL CD083138 [AANAATTCGGCACGAGGGCCGAATCAGGNACTTATGTTTAATGAGTTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACCAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTNTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAG] [+] EMBL CD082843 [ TGTTTAATGAGTTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTNTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTNTGTTGGTAAATCAAGAAGAGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10890#0 -TCGCTACAATATGTAT-CCGAATCAGGGACTTATGTTTAATGAGTTCCCACTAGATCAA 58 consensus_10890#2 AANAATTCGGCACGAGGGCCGAATCAGGNACTTATGTTTAATGAGTTCCCACTAGATCAA 60 consensus_10890#1 -------------------------------------------------CTCCAGGCCAG 11 * * ** ** consensus_10890#0 CATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTT 118 consensus_10890#2 CATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTT 120 consensus_10890#1 AATTTGGCACGAGG-------CGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTT 64 ** **** *************************************** consensus_10890#0 GTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTC 178 consensus_10890#2 GTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTC 180 consensus_10890#1 GTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTC 124 ************************************************************ consensus_10890#0 CTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGT 238 consensus_10890#2 CTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGT 240 consensus_10890#1 CTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGT 184 ************************************************************ consensus_10890#0 TTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAAT 298 consensus_10890#2 TTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAAT 300 consensus_10890#1 TTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAAT 244 ************************************************************ consensus_10890#0 GGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAAT 358 consensus_10890#2 GGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAAT 360 consensus_10890#1 GGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAAT 304 ************************************************************ consensus_10890#0 TTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAA 418 consensus_10890#2 TTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAA 420 consensus_10890#1 TTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAA 364 ************************************************************ consensus_10890#0 GAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTT 478 consensus_10890#2 GAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTT 480 consensus_10890#1 GAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTT 424 ************************************************************ consensus_10890#0 CAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTA 538 consensus_10890#2 CAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTA 540 consensus_10890#1 CAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTA 484 ************************************************************ consensus_10890#0 CCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATAC 598 consensus_10890#2 CCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATAC 600 consensus_10890#1 CCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATAC 544 ************************************************************ consensus_10890#0 AAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAG 658 consensus_10890#2 CAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTNTGTTGGTAAATCAAGAAGAG 660 consensus_10890#1 AAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAG 604 ************************************** ******************** consensus_10890#0 GGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCT 718 consensus_10890#2 GGTAGTGACAAAG----------------------------------------------- 673 consensus_10890#1 GGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCT 664 ************* consensus_10890#0 CGTCGTCCCGCCCTGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTC 778 consensus_10890#2 ------------------------------------------------------------ consensus_10890#1 CGTCGTCCCGCCCTGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTC 724 consensus_10890#0 AGTCCACCTCCCAGTGAATGTGATTTCAACTACAATCTGGATGATACAGAAGGTGTTTGC 838 consensus_10890#2 ------------------------------------------------------------ consensus_10890#1 AGTCCACCTCCCAGTGAATGTGATTTCAACTACATCTGGATGATACAGAANGGTGTTGCG 784 consensus_10890#0 GATTTATTTGATATTCCTGTTATCTCCACATCTACCAACTAACTATTTATTGTACGCTTT 898 consensus_10890#2 ------------------------------------------------------------ consensus_10890#1 ATTTATTTGATATTCCTGTTATCTCACATCTACCAAACTACTATTATGACGCTTTCTTAN 844 consensus_10890#0 CTATAAAACAATAAGACATATATAATAAGT 928 consensus_10890#2 ------------------------------ consensus_10890#1 NACATAGACA-------------------- 854 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||