These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1100 fasta sequence [GGGCCCTTACCAATCTGTAGTGGGTGATCCCCTGGAAAAATTATTGCGGTTATGCGGCCAAACTGAAATCAAGTCATTCGATGAATATTTTGATCATACAATAGTTGAAAGTATGGTGAAAATTGGCGAGGGTGTGTATGGTGAGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGA-CCTACTATTACCTCATCACATAAGAGAACAATGGCATCTGTACGGCACCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCATTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTAAAGTACCTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAACAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAACTATTCCGAATGCCATATTACAGGTTAGGCTGGAACGTTTCCCTATCCAATCTTTTTCTGGCAAAAAGTCTGACTCAGCTGTCGGTTCGTGTAATAGCAGTTTGGCGAATGAATCACAGACAGAAACTAAGGCTTCGAAAGAGTTGCTATCCTTGTTCTCTCCCAGAAGATTTAGTTCAGCTGGAAAAGATCAGGCAGCCAAGCTAAA] [+] EMBL CD067526 [GGGCCCTTACCAATCTGTAGTGGGTGATCCCCTGGAAAAATTATTGCGGTTATGCGGCCAAACTGAAATCAAGTCATTCGATGAATATTTTGATCATACAATAGTTGAAAGTATGGTGAAAATTGGCGAGGGTGTGTATGGTGAGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGA ] [+] EMBL CD127470 [ AAATCAAGTCATTCGATGAATATTTTGATCATACAATAGTTGAAAGTATGGTGAAAATTGGCGAGGGTGTGTATGGTGAGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATG ] [+] EMBL CD194387 [ ATCAAGTCATTCGATGAATATTTTGATCATACAATAGTTGAAAGTATGGTGAAAATTGGCGAGGGTGTGTATGGTGAGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAGTGGATGGTTTTAGAATCTGAATTTGCTGGATAGCCACTTTCCAATG ] [-] EMBL CD127546 [ AGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTACAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGA CCTACTATT ] [+] EMBL CD187682 [ TCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGGAGCTCGTTCTGTGAT ] [-] EMBL CD127710 [ AATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAAAGTATTGGTCCGA CC ] [+] EMBL CD112174 [ AACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGACCCGACT CGACCTCATCACATAAGAGAACAATGGCATCTGTACGGCACCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCATTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTAAAGTACCTGGAGATTTAAGTGAAACTACTACACGGGTGACGCGTTCATGTAGTGTCAA ] [-] EMBL CD186635 [ TGTCAACACTTGTTCGGAGACTTAAAGTACCTGGAGGTTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAACAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAACTATTCCGAATGCCATATTACAGGTTAGGCTGGAACGTTTCCCTATCCAATCTTTTTCTGGCAAAAAGTCTGACTCAGCTGTCGGTTCGTGTAATAGCAGTTTGGCGAATGAATCACAGACAGAAACTAAGGCTTCGAAAGAGTTGCTATCCTTGTTCTCTCCCAGAAGATTTAGTTCAGCTGGAAAAGATCAGGCAGCCAAGCTAAA] [-] EMBL CD181463 [ CTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAACAAGTCCAGTTGTCAATCAAAAACGTTCTTTGCGAAGCAGTCTCCGGCGCAGCATTCAAACTATTCCGAATGCCATATTACAGGTTAGGCTGGAACGTTTCCCTtagcg ] consensusID : consensus_10896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 994 fasta sequence [CCAATAATTCGGCACGAGGGTCAACGGGNGTTGAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGACCTACTCGACAATCGAAACTGCGTTATCGTGTTGGGGGAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTATCCCGTCTTTGTC-ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAGTTCGATAATTTTTCCGGTTTCTTGACATACGTTCTATGTTTGTGG-TTAGTTTTGGATATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAGT] [+] EMBL CD081665 [CCAATAATTCGGCACGAGGGTCAACGGGNGTTGAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGACCTACTCGACAATTGAAACT TTATCGTGTTGGGGGAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTATCCCGTCTTTGTC ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTNTTTTGTTNTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCNTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAAGTCGAT ATTTTTCCCGTTTCTTGACATACGTTCTATGTTTGTGG TTAGTTTTGGATATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAG ] [+] EMBL CD079942 [ TGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGACCTACTCGACAATCGAAACTGCGTTATCGTGTTGGGGGAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTATCCCGTCTTTGTC ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTNTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACG TTATCATGAAGTTCGATAATTTTTCCGGNTTCTTGA ATACGTNCTATGNTTGNGGNNTAGTTNTGGATATTTTTTGTAGA CTCGTCTC AAATCGC TTTTGTATCAT AAATATTa ] [+] EMBL CD078761 [ CCGACCTACTCGACAATCGAAACTGCGTTATCGTGTTGGGGGAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTATCCCGTCTTTGTC ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACG ] [-] EMBL BG932392 [ GGAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTATCCCGTCTTTGTC ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTAGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTc ] [-] EMBL CD074139 [ TCACAGTATCCCGTCTTGTTC ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAGTTCGATAATTTTTCCGGTTTCTTGACATACGTTCTATGTTTGTGG TTAGTTTTGGATATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAGT] [-] EMBL CD073658 [ ATCCCGTC TTGTCGAGGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAGTTCGATAATTTTTCCGGTTTCTTGACATACGTTCTATGTTTGTGG TTAGTTTTGGATATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAGT] [-] EMBL CD073221 [ GCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTTTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAGTTCGATAATTTTTCCGGTTTCTTGACATACGTTCTATGTTTGTGG TTAGTTTTGGATATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAGT] [+] EMBL CD145898 [ GGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAA ] [-] EMBL CD202637 [ GTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAGTTCGATAATTT ] consensusID : consensus_10896#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 736 fasta sequence [GTTAAGATATGCTGTATTGCGGTGCATCAAATCAATCGCAAAGCGTTGCAGTTTCTTCGCTAATCAGGTGCTGAAGGTCCTACACTCCATAAATGAATGGAAATTGCTACACTTTCAAATGGTTTTTGGACGTCATGGTTGTGAAATGGTAGGTGAATCGGGTTATCAACTTAGAAATTTGCCAAACAACCGCTCTAAGCGTAACATAGAGATCGAGTGTGATTCCAATACCTGTGGGCATCAAGCTAAGCGTCCACGTCGTTCTGACTCGACCTCATCACATAAAGAGAACAATGGCATCTGTACGGCCCCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCATTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTAAAGTACCTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAACAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAACTATTCCGAATGCCATATTACAGGTTANGCTGGAAACGTTCCCTATCCAATCTTTTTCTGGCANAAAGTCTGACTCAGCTGTCAGTTCGTGTAATANCCAGTTTGGCGAATGAATCACAGACAGAAACTAAGGCTTCAAAGAGGNGCTATCCTTGGTCTCTCCAGAAGATTANNTTACCTGGAAAAGATCAAGCCCC] [-] EMBL CD156090 [GTTAAGATATGCTGTATTGCGGTGCATCAAATCAATCGCAAAGCGTTGCAGTTTCTTCGCTAATCAGGTGCTGAAGGTCCTACACTCCATAAATGAATGGAAATTGCTACACTTTCAAATGGTTTTTGGACGTCATGGT ] [+] EMBL CD179568 [ GGTCCTACACTCCATAAATGAATGGAAATTGCTACACTTTCAAATGGTTTTTGGACGTCATGGTTGTGAAATGGTAGGTGAATCGGGTTATCAACTTAGAAATTTGCCAAACAACCGCTCTAAGCGTAACATAGAGATCGAGTGTGATTCCAATACCTGTGGGCATCAAGCTAAGCGTCCACGTCGTTCTGACTCGACCTCATCACATAAAGAGAACAATGGCATCTGTACGGCCCCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCATTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTAAAGTACCTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAACAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAACTATTCCGAATGCCATATTACAGGTTANGCTGGAAACGTTCCCTATCCAATCTTTTTCTGGCANAAAGTCTGACTCAGCTGTCAGTTCGTGTAATANCCAGTTTGGCGAATGAATCACAGACAGAAACTAAGGCTTCAAAGAGGNGCTATCCTTGGTCTCTCCAGAAGATTANNTTACCTGGAAAAGATCAAGCCCC] consensusID : consensus_10896#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence [CAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGGCCGACCTACTCGACAATCGAAACTGCGT] [+] EMBL CD163757 [CAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGGCCGACCTACTCGACAATCGAA ] [-] EMBL CD163749 [ CCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGCAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTACAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGACCTACTCGACAATCGAAACTGCGT] consensusID : consensus_10896#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 165 fasta sequence [AGTAGCAGGTTTAGACGTGAAAAATGTACTCCCAGCTGTTATTTGTGTATACTTAGTTGATCTTAGTGATTTTAGTACTACATGCTCTTTATCGATGTTACATTTATATGTTTATGAAGTTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCAT] [+] EMBL CD158559 [AGTAGCAGGTTTAGACGTGAAAAATGTACTCCCAGCTGTTATTTGTGTATACTTAGTTGATCTTAGTGATTTTAGTACTACATGCTCTTTATCGATGTTACATTTATATGTTTATGAAGTTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCAT] [+] EMBL CD158656 [AGTAGCAGGTTTAGACACGAAAAATGTACTCCCAGCTGTTATTTGTGTATACTTAGTTGATCTTAGTGATTTTAGTACTACATGCTCTTTATCGATGTTACATTTATATGTTTATGAAGTTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10896#0 GGGCCCTTACCAATCTGTAGTGGGTGATCCCCTGGAAAAATTATTGCGGTTATGCGGCCA 60 consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 ------------------------------------------------------------ consensus_10896#2 ------------------------------------------------------------ consensus_10896#0 AACTGAAATCAAGTCATTCGATGAATATTTTGATCATACAATAGTTGAAAGTATGGTGAA 120 consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 ------------------------------------------------------------ consensus_10896#2 ------------------------------------------------------------ consensus_10896#0 AATTGGCGAGGGTGTGTATGGTGAGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAAT 180 consensus_10896#3 -------------------------------CAGTCACCGAAGGGCAATGTAGTCAAAAT 29 consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 ------------------------------------------------------------ consensus_10896#2 ------------------------------------------------------------ consensus_10896#0 CTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGT 240 consensus_10896#3 CTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGT 89 consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 ------------------------------------------------------------ consensus_10896#2 ------------------------------------------------------------ consensus_10896#0 TTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAA 300 consensus_10896#3 TTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAA 149 consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 ------------------------------------------------------------ consensus_10896#2 ------------------------------------------------------------ consensus_10896#0 CCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAA 360 consensus_10896#3 CCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAA 209 consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 ------------------------------------------------------------ consensus_10896#2 ------------------------------------------------------GTTAAG 6 consensus_10896#0 GGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGG-GGTTCAGACAACGAATGTC 419 consensus_10896#3 GGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGG-GGTTCAGACAACGAATGTC 268 consensus_10896#4 ----------------AGTAGCAGGTTTAGACGTGAAAAA-TGTACTCCCAGCTGTTATT 43 consensus_10896#1 -------------CCAATAATTCGGCACGAGGGTCAACGGGNGTTGAGACAACGAATGTC 47 consensus_10896#2 ATATGCTGTATTGCGGTGCATCAAAT-CAATCGCAAAGCGTTGCAGTTTCTTCGCTAATC 65 * * ** * * * * consensus_10896#0 TGGACTTCTTA--CCTGCTGAACAACAATGGAT--GGTTTTAGAATCTGAATTTGCTGGA 475 consensus_10896#3 TGGACTTCTTA--CCTGCTGAACAACAATGGAT--GGTTTTAGAATCTGAATTTGCTGGA 324 consensus_10896#4 TG---TGTATA--CTTAGTTGATCTTAGTGATTTTAGTACTACATGCT--CTTTATCGAT 96 consensus_10896#1 TGGACTTCTTA--CCTGCTGAACAACAATGGAT--GGTTTTAGAATCTGAATTTGCTGGA 103 consensus_10896#2 AGGTGCTGAAGGTCCTACACTCCATAAATGAATGGAAATTGCTACACT--TTCAAATGGT 123 * * * * ** * * ** * * consensus_10896#0 GAGCCACTTTCCAATGTACGA--TTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAAC 533 consensus_10896#3 GAGCCACTTTCCAATGTACGA--TTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAAC 382 consensus_10896#4 GTTACATTTATATGTTTATGAAGTTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAAC 156 consensus_10896#1 GAGCCACTTTCCAATGTACGA--TTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAAC 161 consensus_10896#2 TTTTGGACGTCATGGTTGTGAAATGGTAGGTGAATCGGGTTATCAACTTAGAAATTTGCC 183 * ** * * ** * * * *** * consensus_10896#0 AGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTAC 593 consensus_10896#3 AGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTAC 442 consensus_10896#4 AGATAGCAT--------------------------------------------------- 165 consensus_10896#1 AGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTAC 221 consensus_10896#2 AAACAAC--CGCTCTAAGCGTAACATAGAGATCGAGTGTGATTCCAATACCTGTGG--GC 239 * * * * consensus_10896#0 ATTGGCATAATGTATTGGTCCGACCTACTATTACCTCATCACA-TAAGAGAACAATGGCA 652 consensus_10896#3 ATTGGCATAATGTATTGGGCCGACCTACTCGACAATCGAAAC--TGCGT----------- 489 consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 ATTGGCATAATGTATTGGTCCGACCTACTCGACAATCGAAACTGCGTTATCGTGTTGGGG 281 consensus_10896#2 ATCAAGCTAAGCGTCCACGTCGTTCTGACTCGACCTCATCACATAAAGAGAACAATGGCA 299 consensus_10896#0 TCTGTACGGCACCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCA 712 consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 GAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTAT 341 consensus_10896#2 TCTGTACGGCCCCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCA 359 consensus_10896#0 TTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTA 772 consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 CCCGTCTTTGTCATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTT 401 consensus_10896#2 TTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTA 419 consensus_10896#0 AAGTACCTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAA 832 consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 TTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGA 461 consensus_10896#2 AAGTACCTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAA 479 consensus_10896#0 CAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAA 892 consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 ATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGA 521 consensus_10896#2 CAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAA 539 consensus_10896#0 CTATTCCGAATGCCATATTACAGGTTAGGCTGGAACGTTTCCCTATCCAATCTTTTTCTG 952 consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 AACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTG 581 consensus_10896#2 CTATTCCGAATGCCATATTACAGGTTANGCTGGAAACGTTCCCTATCCAATCTTTTTCTG 599 consensus_10896#0 GCAAAAAGTCTGACTCAGCTGTCGGTTCGTGTAATAGCAGTTTGGCGAATGAATCACAGA 1012 consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 AATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTG 641 consensus_10896#2 GCANAAAGTCTGACTCAGCTGTCAGTTCGTGTAATANCCAGTTTGGCGAATGAATCACAG 659 consensus_10896#0 CAGAAACTAAGGCTTCGAAAGAGTTGCTATCCTTGTTCTCTCCCAGAAGATTTAGTTCAG 1072 consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 TAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTC 701 consensus_10896#2 ACAGAAACTAAGGCTTCAAAGAGGNGCTATCCTTGGTCTCTCCAGAAGATTANNTTACCT 719 consensus_10896#0 CTGGAAAAGATCAGGCAGCCAAGCTAAA-------------------------------- 1100 consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 CCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTT 761 consensus_10896#2 GGAAAAGATCAAGCCCC------------------------------------------- 736 consensus_10896#0 ------------------------------------------------------------ consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 TCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTT 821 consensus_10896#2 ------------------------------------------------------------ consensus_10896#0 ------------------------------------------------------------ consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 CCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATG 881 consensus_10896#2 ------------------------------------------------------------ consensus_10896#0 ------------------------------------------------------------ consensus_10896#3 ------------------------------------------------------------ consensus_10896#4 ------------------------------------------------------------ consensus_10896#1 AAGTTCGATAATTTTTCCGGTTTCTTGACATACGTTCTATGTTTGTGGTTAGTTTTGGAT 941 consensus_10896#2 ------------------------------------------------------------ consensus_10896#0 ----------------------------------------------------- consensus_10896#3 ----------------------------------------------------- consensus_10896#4 ----------------------------------------------------- consensus_10896#1 ATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAGT 994 consensus_10896#2 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||