These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1481 fasta sequence [TAAATCCGCCTCCATTAATAACTAACAGTTTAGCACCAAATACAATTGATCAACTCGATCGGTTAAGTGGCGTTCTAAGAGATTTGGCAATAACTAGTCCAGAATGTTCAATTAACTGGTGCACATCAAAGTTATGTGAATATGAAAATTTGAAAAATATTTCTGACAAAGAGAAAGCAGCTTGTTTGAATATGGAGAAAATGACATGTGATCAAATAACTGCTCAATATCAAATAGATGAAAATGTGACTCATCGAAAGTTACCAGATATAGATGTATTATCATTATATAACTCTCATATATCACAACCAAAAACTGGTTCTAGAAATTCTCTGAAGTATACAATATGTTCATTGATCAATGATAGAAAAATAAGTGTTCAAGAATTAGAATCAATGAAACAAAATACTTTACAATTTTATAATTCGCGTCATTTATTAAATCAATTAGGTTATTTATCTTGGAAGCATAGACCTACTGTTGAATTATTACAAATATCTCCAGCTCTTATACGTGAATTAAAACATCTGGATAATCTTGGATCGCGTGAAACTCATAAACTTGCTATATTTTATGTGGGAGCAGGACAAGAAGATAAACAGTCTATTTTATCAAATCAAACAGCTAGTTTAGAATTTGAAAATTTTGTAGCTGGTCTTGGCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGGGTTAGAATGTAGTGGACGTGCTGGTCTATCCACACCATATTATGCAACATCTACTTTAGAAGTTATTTTCCATGTTTCAACAAGAATGCCTTCATCTACTCAAGAAGATTTAAAGTATAAACATTTGGGAAACGATGAAATTATGATTATATGGAATGAGAATTCACGTGCTTTTAGACGAAGTATACTGCGTACACAATTCGGCGATGTATTAATCATTATTTCACCTTTACTTAATGGATTGTTTAAAGTTGAAGTACGACGTGAAGCCCAGGTTGGTTTATTCGGACCAATTGTGGAGAATGCTATTTTAACTGCAAATGTTCTACCAGGTCTAGTTCGTGCTACAGCTATTAATGCTAGTCGTGCTGTTCGAGCTATCAAACCGGGATATCGTCATCCATATGAAGATCGTGCTTCAAGTCTACGGCAAATAATATCCAAGTATACATTGTCAACCTGCTTTGAAGAATATGCTGCATCGATACTTTTGCCAAATTCAAAAAGTGGCTCGATTATGTCATTGGAACAACTAATTACTCGCCTGCATGATGAAGTAAAACGTTAAACCCTTACTTCCATAACTACTTCTATTCTAAATAAATTTATGCACCACAATCAGTCAAATTTATCATTGAATCGAGGTGTAGTCAGTAAATCAGGTGGTGTAAAATTTTCTGATGTTCCACCTATTACACAAGAAACTTATCATAGTTATTCGCAAAACTCAACGTCTGATCTCGCTCCTAATGATGTAACTAACTAATAATAATACTCT] [-] EMBL CD093024 [TAAATCCGCCTCCATTAATAACTAACAGTTTAGCACCAAATACAATTGATCAACTCGATCGGTTAAGTGGCGTTCTAAGAGATTTGGCAATAACTAGTCCAGAATGTTCAATTAACTGGTGCACATCAAAGTTATGTGAATATGAAAATTTGAAAAATATTTCTGACAAAGAGAAAGCAGCTTGTTTGAATATGGAGAAAATGACATGTGATCAAATAACTGCTCAATATCAAATAGATGAAAATGTGACTCATCGAAAGTTACCAGATATAGATGTATTATCATTATATAACTCTCATATATCACAACCAAAAACTGGTTCTAGAAATTCTCTGAAGTATACAATATGTTCATTGATCAATGATAGAAAAATAAGTGTTCAAGAATTAGAATCAATGAAACAAAATACCTTACAATTTTATAATTCGCGTCATTTATTAAATCAATTAGGTTATTTATCTTGGAAGCATAGACCTACTGTTGAATTATTACAAATATCTCCAGCTCTTATACGTGAATTAAAACATCTGGATAATCTTGGATCGCGTGAAACTCATAAACTTGCT ] [-] EMBL CD065824 [ ATGAAAATGTGACTCATCGAAAGTTACCAGATATAGATGTATTATCATTATATAACTCTCATATATCACAACCAAAAACTGGTTCTAGAAATTCTCTGAAGTATACAATATGTTCATTGATCAATGATAGAAAAATAAGTGTTCAAGAATTAGAATCAATGAAACAAAATACTTTACAATTTTATAATTCGCGTCATTTATTAAATCAATTAGGTTATTTATCTTGGAAGCATAGACCTACTGTTGAATTATTACAAATATCTCCAGCTCTTATACGTGAATTAAAACATCTGGATAATCGTGGATCGCGTGAAACTCATAAACTTGCTATATTTTATGTGGGAGCAGGACAAGAAGATAAA ] [+] EMBL CD118204 [ CATTGATCAATGATAGAAAAATAAGTGTTCAAGAATTAGAATCAATGAAACAAAATACTTTACAACTTTATAATTCGCGTCATTTATTAAATCAATTAGGTTACTTATCTTGGAAGCATAGACCTACTGTTGAATTATTACAAATATCTCCAGCTCTTATACGTGAATTAAAACACCTGGATAATCTTGGATCGCGTGAAACTCATAAACTTGCTATATTTTATGTGGGAGCAGGACAAGAAGATAAACAGTCTATTTTATCAAATCAAACAGCTAGTTTAGAATTTGAAAATTTTGTAGCTGGTCTTGGCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGG ] [+] EMBL CD118055 [ CATTGATCAATGATAGAAAAATAAGTGTTCAAGAATTAGAATCAATGAAACAAAATACTTTACAATTTTATAATTCGCGTCATTTATTAAATCAATTAGGTTATTTATCTTGGAAGCATAGACCTACTGTT ] [+] EMBL CD065864 [ TACGTGAACTTAAACATCTGGAT ATCTTGGATCGCGTGAAACTCATAAACTTGCTATATTTTATGTGGGAGCAGGACAAGAAGATAAACAGTCTATTTTATCAAATCAAACAGCTAGTTTAGAATTTGAAAATTTTGTAGCTGGTCTTGGCTGG ] [+] EMBL CD189522 [ gGGGAGCAGGACAAGAAGATAAACAGTCTATTTTATCAAATCAAACAGCTAGTTTAGAATTTGAAAATTTTGTAGCTGGTCTTGGCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGGGTTAGAATGTAGTGGACGTGCTGGTCTATCCACACCATATTATGCAACATCTACTTTAGAAGTTATTTTCCATGTTTCAACAAAAATGCCTTCATCTACTCAAGAAGATTTAAAGTATAAACATTTGGGAAACGATGAAATTATGATTATATGGAATGAGAATTCACGTGCTTTTAGACGAAGTATACTGCGTACACAATTCGGCGATGTATTAATCATTATTTCACCTTTACTTAATGGATTGTTTAAAGTTGAAGTACGACGTGAAGCCCAGGTTGTTTTATTCGGACCAATTGTGGAG ATGCTATTTTAACTGC ] [+] EMBL CD168196 [ AAACAGTCTATTTTATCAAATCAAACAGCTAGTTTAGAATTTGAAAATTTTGTAGCTGGTCTTGGCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGGGTTAGAATGTAGTGGACGTGCTGGTCTATCCACACCATATTATGCAACATCTACTTTAGAAGTTATTTTCCATGTTTCAACAAGAATGCCTTCATCTACTCAAGAAGATTTAAAGTATAAACATTTGGGAAACGATGAAATTATGATTATATGGAATGAGAATTCACGTGCTTTTAGACGAAGTATACTGCGTACACAATTCGGCGATGTATTAATCATTATTTCACCTTTACTTAATGGATTGTTTAAAGTTGAAGTACGACGTGAAGCCCAGGTTGGTTTATTCGGACCAATTGTGGAGAATGCTATTTTAACTGCAAATGTTCTACCAGGTCTAGTTCGTGCTACAGCTATTAATGCTAGTCGTGCTGTTCGAGCTATCAAACCGGGATATCGTCATCCATATGAAGATCGTGCTTCAAGTCTACGGCAAATAATATCCAAGTATACATTGTCAACCTGCTTTGAAGAATATGCTGC ] [+] EMBL CD067494 [ gggcgGTCTATTTTATCAAATCAAACAGCTAGTTTAGAATTTGAAAATTTTGTAGCTGGTCTTGGCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGGGTTAGAATGTAGTGGACGTGCTGGTCTATCCACACCATATTATGCAACATCTACTTTAGAAGTTATTTTCCATGTTTCAACAAGAATGCCTTCATCTACTCAAGAAGATTTAAAGTATAAACATTTGGGAAACGATGAAATTATGATTATATGGAATGAGAATTCACGTGCTTTTAGACGAAGTATACTGCGTACACAATTCGGCGATGTATTAATCATTATTTCACCTTTACTTAATGGATTGTTCAAAGTTGAAGTACGACGTGAAGCCCACGTTGGTTTATTC ] [+] EMBL AI974991 [ AAGTATACTGCGTACACAATTCGGCGATGTATTAATCATTATTTCACCTTTACTTAATGGATTGTTTAAAGTTGAAGTACGACGTGAAGCCCAGGTTGGTTTATTCGGACCAATTGTGGAGAATGCTATTTTAACTGCAAATGTTCTACCAGGTCTAGTTCGTGCTACAGCTATTAATGCTAGTCGTGCTGTTCAAGCTATCAAACCGGGATATCGTCATCCATATGAAGATCGTGCTTCAAGTCTACGGCAAATAATATCCAAGTATACATTGTCAACCTGCTTTGAAGAATATGCTGCATCGATACTTTTGCCAAATTCAAAAAGTGGCTCGATTATGTCATTGGAACAACTAATTACTCGCCTGCATGATGAAGTAAAACGTTAAACCCTTACTTCCATAACTACTTCTATTCTAAATAAATTTATGCACCACAATCAGTCAAATTTATCATTGAATCGAGGTGTAGTCAGTAAATCAGGTGGTGTAAAATTTTCTGATGTTCCACCTATTACACAAGAAACTTATCATAGTTATTCGCAAAACTCAACGTCTGATCTCGCTCCTAATGATGTAACTAACTAATAATAATACTCT] consensusID : consensus_10908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1055 fasta sequence [GGTACCCTGGTTGGTGGAAATCACGACAAGAAGATAAACAGTCTATTTTATCAAATTTAACAGCTAGTTTAGAATTTGAAAATTTTGTAGCTGGTCTTGGCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGGGTTAGAATGTAGTGGACGTGCTGGTCTATCCACACCATATTATGCAACATCTACTTTAGAAGTTATTTTCCATGTTTCAACAAGAATGCCTTCATCTACTCAAGAAGATTTAAAGTATAAACATTTGGGAAACGATGAAATTATGATTATATGGAATGAGAATTCACGTGCTTTTAGACGAAGTATACTGCGTACACAATTCGGCGATGTATTAATCATTATTTCACCTTTACTTAATGGATTGTTTAAAGTTGAAGTACGACGTGAAGCCCAGGTTGGTTTATTCGGACCAATTGTGGAGAATGCTATTTTAACTGCAAATGTTCTACCAGGTCTAGTTCGTGCTACAGCTATTAATGCTAGTCGTGCTGTTCGAGCTATCAAACCGGGATATCGTCATCCATATGAAGATCGTGCTTCAAGTCTACGGCAAATAATATCCAAGTATACATTGTCAACCTGCTTTGAAGAATATGCTGCATCGATACTTTTGCCAAATTCAAAAAGTGTTGAAACTGTTTAGCTTCATCCTATGCTCGAATTGAATTATTTGTGTATGCAACTCTCGTACAGGCTAGGTTTTTTTGCTTTATTTTAATGTGTTTAGACTTTTCATAAATTCTTGAATAGGTCGCTTCATTTATTTAAATAAATATCTGTTGATTGCTTGCCAACAGCATGCATGTATAAATGATGATCATTAATTCCCTTCCATCGATATTATTGTAACTATCAATTTTTGTCTGTTCAAGCATAAATGTACTGAATTCCTCTGCATATTTCAATTACTTCTTATTGATCTATAGGCTCGATTATGTCATTGGAACAACTAATTACTCGCCTGCATGATGAAGTAAGACGTTAAACCCTTACTTCCATAACTACTTCTATTCTAAATAAATTTAGTGAGTGT] [+] EMBL CD168306 [GGTACCCTGGTTGGTGGAAATCACGACAAGAAGATAAACAGTCTATTTTATCAAATTTAACAGCTAGTTTAGAATTTGAAAATTTTGTAGCTGGTCTTGGCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGGGTTAGAATGTAGTGGACGTGCTGGTCTATCCACACCATATTATGCAACATCTACTTTAGAAGTTATTTTCCATGTTTCAACAAGAATGCCTTCATCTACTCAAGAAGATTTAAAGTATAAACATTTGGGAAACGATGAAATTATGATTATATGGAATGAGAATTCACGTGCTTTTAGACGAAGTATACTGCGTACACAATTCGGCGATGTATTAATCATTATTTCACCTTTACTTAATGGATTGTTTAAAGTTGAAGTACGACGTGAAGCCCAGGTTGGTTTATTCGGACCAATTGTGGAGAATGCTATTTTAACTGCAAATGTTCTACCAGGTCTAGTTCGTGCTACAGCTATTAATGCTAGTCGTGCTGTTCGAGCTATCAAACCGGGATATCGTCATCCATATGAAGATCGTGCTTCAAGTCTACGGCAAATAATATC ] [-] EMBL CD139833 [ CTACCAGGTCTAGTTCGTGCTACAGCTATTAATGCTAGTCGTGCTGTTCAAGCTATCAAACCGGGATATTGTCATCCATATGAAGATCGTGCTTCAAGTCTACGGCAAATAATATCCAAGTATACATTGTCAACCTGCTTTGAAGAATATGCTGCATCGATACTTTTGCCAAATTCAAAAAGTGTTGAAACTGTTTAGCTTCATCCTATGCTCG ] [-] EMBL CD118624 [ CATCCATATGAAGATCGTGCTTCAAGTCTACGGCAAATAATATCCAAGTATACATTGTCACCCTGCTATGAAGAATATGCTGCATCGATACTTTTGCCAAATTCAAAAAGTGTTGAAACTGTTTAGCTTCATCCTATGTAAGAATTGAATTATTTGTGTATGCAACTCTCGTACAGGCTAGGTTTTTTTGCTTTATTTTAATGTGTTTAGACTTTTCATAAATTCTTGAATAGGTCGCTTCATTTATTTAAATAAATATCTGTTGATTGCTTGCCAACAGCATGCATGTATAAATGATGATCATTAATTCCCTTCCATCGATATTATTGTAACTATCAATTTTTGTCTGTTCAAGCATAAATGTACTGAATTCCTCTGCATATTTCAATTACTTCTTATTGATCTATAGGCTCGATTATGTCATTGGAACAACTAATTACTCGCCTGCATGATGAAGTAAGACGTTAAACCCTTACTTCCATAACTACTTCTATTCTAAATAAATTTAGTGAGTGT] consensusID : consensus_10908#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 904 fasta sequence [AGGTAGTGCTCACAGTATTTGAGAAAGTACTGTTATTGTTGCCGGAACACATTCACCAAAGATGGCAGCATAATTGTATTAT--TGAAGTAATTGAGGATCTCCTGTACGAAAAGAATGCGCTCACTATCCGTAAAAGGGGAATCAGGTTATTTTTAATATGGTATCAGATACTTGGCTTGAATGCAACATCTGTCTGCCATAGAATTTTCTACAATCTGGTCCCTGAATTTGGCCCACTGATTGCAGAATATCAAAAGCGTGAAAATGATCAGCGCAAGCGCAGCCATCCTCATGCTAGAAACCTCTCAACGGATACACGTGGACAGATGATGCAAGAGTCGAAGTCCTCGAATGTTGTTGCCCCGCGCGAACGGGTTGCCCTCCTAACTGCCACTGCTCTAGGAGAGGATGAGTCGTTTGATGACAAATCCTTAGTCCTGCTTCAGTCACTTCTACATTTCCTTGTCTCAGAATCCTTCAAGATCGAGTGGTCACAACTTCGATATGAGCAACATTTAATGCAGCTATGGTTTCTGTTCGAAAAGTTAAAACATTCGTACCTCCCCGTTATTTTTCCATGTTTATCTCCTTTATACTCAATATATTCGCCCTCGACTTCATCCCAAGTGAACAACACAATCCCATTAACTTCAAATATTTTACAGGATTACCCAATCCATCCATCACGTCTTTCATACTATCAGTTAGAATTTGAAAATTTTGTAGCTGGTCTTGGCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGGGTTAGAATGTAGTGGACGTGCTGGTCTATCCACACCATATTATGCAACATCTACTTTAGAAGTTATTTTCCATGTTTCAACAAGAATGCCTTCATCTACTCAAGAAGATTTAAAGTATAAACATTT] [-] EMBL CD183043 [AGGTAGTGCTCACAGTATTTGAGAAAGTACTGTTATTGTTGCCGGAACACATTCACCAAAGATGGCAGCATAATTGTATTAT TGAAGTAATTGAGGATCTCCTGTACGAAAAGAATGCGCTCACTATCCGTAAAAGGGGAATCAGGTTATTTTTAATATGGTATCAGATACTTGGCTTGAATGCAACATCTGTCTGCCATAGAATTTTCTACAATCTGGTCCCTGAATTTGGCCCACTGATTGCAGAATATCAAAAGCGTGAAAATGATCAGC ] [+] EMBL CD194165 [ GCAGCATAATTGTATTAT TGAAGTAATTGAGGATCTCCTGTACGAAAAGAATGCGCTCACTATCCGTAAAAGGGGAATCAGGTTATTTTTAATATGGTATCAGATACTTGGCTTGAATGCAACATCTGTCTGCCATAGAATTTTCTACAATCTGGTCCCTGAATTTGGCCCACTGATTGCAGAATATCAAAAGCGTGAAAATGATCAGCGCAAGCGCAGCCATCCTCATGCTAGAAACCTCTCAACGGATACACGTGGACAGATGATGCAAGAGTCGAAGTCCTCGAATGTTGTTGCCCCGCGCGAACGGGTTGCCCTCCTAACTGCCACTGCTCTAGGAGAGGATGAGTCGTTTGATGACAAACCCTTAGTCCTGCTTCAGTCACTTCTACATTTCCTTGTCTCAGAATCCTTCAAGATCGAGTGGTCAC ] [-] EMBL CD178858 [ GTATTATGCTGAAGTAATTGAGGATCTCCTGTACGAAAAGAATGCGCTCACTATCCGTAAAAGGGGAATCAGGTTATTTTTAATATGGTATCAGATACTTGGCTTGAATGCAACATCTGTCTGCCATAGAATTTTCTACAATCTGGTCCCTGAATTTGGCCCACTGATTGCAGAATATCAAAAGCGTGAAAATGATCAGCGCAAGCGCAGCCATCCTCATGCTAGAAACCTCTCAACGGATACACGTGGACAGATGATGCAAGAGTCGAAGTCCTCGAATGTTGTTGCCCCGCGCGAACGGGTTGCCCTCCTAACTGCCACTGCTCTAGGAGAGGATGAGTCGTTTGATGACAAATCCTTAGTCCTGCTTCAGTCACTTCTACATTTCCTTGTCTCAGAATCCTTCAAGATCGAGTGGTCACAACTTCGATATGAACAACATTTAATGCAGCTATGGTTTCTGTTCGAAAAGTTAAAACATTCGTACCTCCCCGTTATTTTTCnca ] [+] EMBL CD121071 [ TCCGTAAAAGGGGAATCAGGTTATTTTTAATATGGTATCAGATACTTGGCTTGAATGCAACATCTGTCTGCCATAGAATTTTCTACAATCTGGTCCCTGAATTTGGCCCACTGATTGCAGAATATCAAAAGCGTGAAAATGATCAGCGCAAGCGCAGCCATCCTCATGCTAGAAACCTCTCAACGGATACACGTGGACAGATGATGCAAGAGTCGAAGTCCTCGAATGTTGTTGCCCCGCGCGAACGGGTTGCCCTCCTAACTGCCACTGCTCTAGGAGAGGATGAGTCGTTTGATGACAAATCCTTAGTCCTGCTTCAGTCACTTCTACATTTCCTTGTCTCAGAATCCTTCAAGATCGAGTGGTCACAACTTCGATATGAGCAACATTTAATGCAGCTATGGTTTCTGTTCGAAAAGTTAAAACATTCGTACCTCCCCGTTATTTTTCCATGTTTATCTCCTTTATACTCAATATATTCGCCCTCGACTTCAT ] [+] EMBL CD179063 [ CCACTGATTGCAGAATATCAAAAGCGTGAAAATGATCAGCGCAAGCGCAGCCATCCTCATGCTAGAAACCTCTCAACGGATACACGTGGACAGATGATGCAAGAGTCGAAGTCCTCGAATGTTGTTGCCCCGCGCGAACGGGTTGCCCTCCTAACTGCCACTGCTCTAGGAGAGGATGAGTCGTTTGATGACAAATCCTTAGTCCTGCTTCAGTCACTTCTACATTTCCTTGTCTCAGAATCCTTCAAGATCGAGTGGTCACAACTTCGATATGAGCAACATTTAATGCAGCTATGGTTTCTGTTCGAAAAGTTAAAACATTCGTACCTCCCCGTTATTTTTCC ] [-] EMBL CD111855 [ TCCTCATGCTAGAAACCTCTCAACGGATACACGTGGACAGATGATGCAAGAGTCGAAGTCCTCGAATGTTGTTGCCCCGCGCGAACGGGTTGCCCTCCTAACTGCCACTGCTCTAGGAGAGGATGAGTCGTTTGATGACAAATCCTTAGTCCTGCTTCAGTCACTTCTACATTTCCTTGTCTCAGAATCCTTTAAGATCGAGTGGTCACAAC ] [+] EMBL CD139634 [ TACCTCCCCGTTATTTTTCCATGTTTATCTCCTTTATACTCAATATATTCGCCCTCGACTTCATCCCAAGTGAACAACACAATCCCATTAACTTCAAATATTTTACAGGATTACCCAATCCATCCATCACGTCTTTCATACTATCAGTTAGAATTTGAAAATTTTGTAGCTGGTCTTGGCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGGGTTAGAATGTAGTGGACGTGCTGGTCTATCCACACCATATTATGCAACATCTACTTTAGAAGTTATTTTCCATGTTTCAACAAGAATGCCTTCATCTACTCAAGAAGATTTAAAGTATAAACATTT] consensusID : consensus_10908#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 587 fasta sequence [AGTGAACAACACAGTCCTATTAACTTCAAATATTTTACAGGATTACCCAATCCATCCATCACGTCTTCCATACTATCAGTTAGAATTCGCCTGCTGGTTGGCAACTTTTGTATATACTGGTCCACGGGAATCAAGTCATGCTATCTCTTCGGACGGTGGCTTCGATTCAAATTTTACTATCCATGGTTCTGTAGTTGGTACTACTGGCCCATCTTTTAACCTGGCTGGCAGTTTCCCATGGGATACACATGGTGATCCAAACGACTTTCTTCTCTCTCGACATTTCCGCTCATTCATAGGTTGTCCTGGACATGGTGAATTCGAATCTGGATCATATTCAAAGGCTAACAGTTACGCCAAACTTTCGAGTTCTCCACCTGTTCAAGTACCAATTTATCTGCGAAATGGTGACGAGAACTTTGTCCAGGAACCAACTAACCTGGCTGCTTCAAACCTCTCTCCTAAACTAAACACGTTATTCGGTCAAAGATACTGCTGTAATTCCTTCCACTGTCCAAACATCTCCACTTCCACAAAAATTTATTTTCACTGAACCATTCTTTAATTACGATGAAAAAGTCGTTTCT] [-] EMBL CD117612 [AGTGAACAACACAGTCCTATTAACTTCAAATATTTTACAGGATTACCCAATCCATCCATCACGTCTTCCATACTATCAGTTAGAATTCGCCTGCTGGTTGGCAACTTTTGTATATACTGGTCCACGGGAATCAAGTCATGCTATCTCTTCGGACGGTGGCTTCGATTCAAATTTTACTATCCATGGTTCTGTAGTTGGTACTACTGGCCCATCTTTTAACCTGGCTGGCAGTTTCCCATGGGATACACATGGTGATCCAAACGACTTTCTTCTCTCTCGACATTTCCGCTCATTCATAGGTTGTCCTGGACATGGTGAATTCGAATCTGGATCATATTCAAAGGCTAACAGTTACGCCAAACTTTCGAGTTCTCCACCTGTTCAAGTACCAATTTATCTGCGAAATGGTGACGAGAACTTTGTCCAGG ] [-] EMBL CD117784 [AGTGAACAACACAGTCCTATTAACTTCAAATATTTTACAGGATTACCCAATCCATCCATCACGTCTTCCATACTATCAGTTAGAATTCGCCTGCTGGTTGGCAACTTTTGTATATACTGGTCCACGGGAATCAAGTCATGCTATCTCTTCGGACGGTGGCTTCGATTCAAATTTTACTATCCATGGTTCTGTAGTTGGTACTACTGGCCCATCTTTTAACCTGGCTGGCAGTTTCCCATGGGATACACATGGTGATCCAAACGACTTTCTTCTCTCTCGACATTTCCGCTCATTCATAGGTTGTCCTGGACATGGTGAATTCGAATCTGGATCATATTCAAAGGCTAACAGTTACGCCAAACTTTCGAGTTCTCCACCTGTTCAAGTACCAATTTATCTGCGAAATGGTGACGAGAACTTTGTCCAGG ] [+] EMBL CD197797 [ CTAACAGTTACGCCAAACTTTCGAGTTCTCCACCTGTTCAAGTACCAATTTATCTGCGAAATGGTGACGAGAACTTTGTCCAGGAACCAACTAACCTGGCTGCTTCAAACCTCTCTCCTAAACTAAACACGTTATTCGGTCAAAGATACTGCTGTAATTCCTTCCACTGTCCAAACATCTCCACTTCCACAAAAATTTATTTTCACTGAACCATTCTTTAATTACGATGAAAAAGTCGTTTCT] consensusID : consensus_10908#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence [TCCATATGAAGATCGTGCTTCAAGTCTACGGCAAATAATATCCAAGTATACATTGTCAACCTGCTTTGAAGAATATGGTGCATCGATACTTTTGCCAAACTCAAAAAGTGTTGAAACTGTTTAGCTTCATCCTATTGCACCACAATCAGTCAAATTTATCATTGAATCGAGGTGTAGTCAGTAAATCAGGTGGTGT] [-] EMBL CD067179 [TCCATATGAAGATCGTGCTTCAAGTCTACGGCAAATAATATCCAAGTATACATTGTCAACCTGCTTTGAAGAATATGGTGCATCGATACTTTTGCCAAACTCAAAAAGTGTTGAAACTGTTTAGCTTCATCCTATTGCACCACAATCAGTCAAATTTATCATTGAATCGAGGTGTAGTCAGTAAATCAGGTGGTGT] consensusID : consensus_10908#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [TCCCTGCAACTCACGGGAATCAGGTTATTTTTAATATGGTATCAGATACTTGGCTTGAATGCAACATCTGTCTGCCATAGAATTTTCTACAATCTGGTCCCTGAATTTGGCCCACTGATTGCAGAATATCAAAAGCGTGAAAATGATCAGCGCAAGCGCAG] [+] EMBL CD062434 [TCCCTGCAACTCACGGGAATCAGGTTATTTTTAATATGGTATCAGATACTTGGCTTGAATGCAACATCTGTCTGCCATAGAATTTTCTACAATCTGGTCCCTGAATTTGGCCCACTGATTGCAGAATATCAAAAGCGTGAAAATGATCAGCGCAAGCGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10908#2 ------------------------------------------------------------ consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 TAAATCCGCCTCCATTAATAACTAACAGTTTAGCACCAAATACAATTGATCAACTCGATC 60 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ------------------------------------------------------------ consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ------------------------------------------------------------ consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 GGTTAAGTGGCGTTCTAAGAGATTTGGCAATAACTAGTCCAGAATGTTCAATTAACTGGT 120 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ------------------------------------------------------------ consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ------------------------------------------------------------ consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 GCACATCAAAGTTATGTGAATATGAAAATTTGAAAAATATTTCTGACAAAGAGAAAGCAG 180 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ------------------------------------------------------------ consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ------------------------------------------------------------ consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 CTTGTTTGAATATGGAGAAAATGACATGTGATCAAATAACTGCTCAATATCAAATAGATG 240 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ------------------------------------------------------------ consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ------------------------------------------------------------ consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 AAAATGTGACTCATCGAAAGTTACCAGATATAGATGTATTATCATTATATAACTCTCATA 300 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ------------------------------------------------------------ consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ------------------------------------------------------------ consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 TATCACAACCAAAAACTGGTTCTAGAAATTCTCTGAAGTATACAATATGTTCATTGATCA 360 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ------------------------------------------------------------ consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ------------------------------------------------------------ consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 ATGATAGAAAAATAAGTGTTCAAGAATTAGAATCAATGAAACAAAATACTTTACAATTTT 420 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ------------------------------------------------------------ consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ------------------------------------------------------------ consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 ATAATTCGCGTCATTTATTAAATCAATTAGGTTATTTATCTTGGAAGCATAGACCTACTG 480 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ------------------------------------------------------------ consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ------------------------------------------------------------ consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 TTGAATTATTACAAATATCTCCAGCTCTTATACGTGAATTAAAACATCTGGATAATCTTG 540 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ------------------------------------------------------------ consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ---------------AGGTAGTGCTCACAGTATTTGAGAAAGTACTGTTATTGTTGCCGG 45 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 GATCGCGTGAAACTCATAAACTTGCTATATTTTATGTGGGAGCAGGACAAGAAGATAAAC 600 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 --------------------GGTACCCTGGTTGGTG-GAAATCACGACAAGAAGATAAAC 39 consensus_10908#3 ----------------------------------AGTGAACAACACAGTCCTATTAACTT 26 consensus_10908#2 AACACATTCACCAAAGATGGCAGCATAATTGT--ATTATTGAAGTAATTGAGGATCTCCT 103 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 AGTCTATTTTATCAAATCAAACAGCTAGTTTA--GAATTTGAAAATTTTGTAGCTGGTCT 658 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 AGTCTATTTTATCAAATTTAACAGCTAGTTTA--GAATTTGAAAATTTTGTAGCTGGTCT 97 consensus_10908#3 CAAATATTTTACAGGATTACCCAATCCATCCATCACGTCTTCCATACTATCAGTTAGAAT 86 consensus_10908#2 GTACGAAAAGAATGCGCTCACTATCCGTAAA--A------GGGGAATCAGGTTATTTTTA 155 consensus_10908#5 ---------------------TCCCTGCAACTCA------CGGGAATCAGGTTATTTTTA 33 consensus_10908#0 TGGCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGGGTTAGAATGTAGTGG 718 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 TGGCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGGGTTAGAATGTAGTGG 157 consensus_10908#3 TCGCCTGCTGGTTG-GCAACTTTTGTATATACTGGTCCA-CGGGAATCAAGTCATGCT-- 142 consensus_10908#2 ATATGGTATCAGATACTTGGCTTGA-ATGCAACATCTGTCTGCCATAGAATTTTCTACAA 214 consensus_10908#5 ATATGGTATCAGATACTTGGCTTGA-ATGCAACATCTGTCTGCCATAGAATTTTCTACAA 92 consensus_10908#0 ACGTGCTGGTCTATCCACACCATATTATGCAACATCTACTTTAGAAGTTATTTTCCATGT 778 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ACGTGCTGGTCTATCCACACCATATTATGCAACATCTACTTTAGAAGTTATTTTCCATGT 217 consensus_10908#3 --ATCTCTTCGGACGGTGGCTTCGA--TTCAAATTTTACTATCCATGGTTCTGTAGTTGG 198 consensus_10908#2 TCTGG------TCCCTGAATTTGGCCCACTGATTGCAGAATATCAAAAGCGTGAAAATGA 268 consensus_10908#5 TCTGG------TCCCTGAATTTGGCCCACTGATTGCAGAATATCAAAAGCGTGAAAATGA 146 consensus_10908#0 TTCAACAAGAATGCCTTCATCTACTCAAGAAGATTTAAAGTATAAACATTTGGGAAACGA 838 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 TTCAACAAGAATGCCTTCATCTACTCAAGAAGATTTAAAGTATAAACATTTGGGAAACGA 277 consensus_10908#3 TACTA------CTGGCCCATCTTTTAACCTGGCTGGCAGTTTCCCATGGGATACACATGG 252 consensus_10908#2 TCAGCGCAAGCGCAGCCATCCTCATGCTAGAAACCTCTCAACGGATACACGTGGACAGAT 328 consensus_10908#5 TCAGCGCAAGCGCAG--------------------------------------------- 161 consensus_10908#0 TGAAATTATGATTATATGGAATGAGAATTCACGTGCTTTTAGACGAAGTATACTGCGTAC 898 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 TGAAATTATGATTATATGGAATGAGAATTCACGTGCTTTTAGACGAAGTATACTGCGTAC 337 consensus_10908#3 TGATC-CAAACGACTTTCTTCTCTCTCGACATTTCCGCTCATTCATAGGTTGTCCTGGAC 311 consensus_10908#2 GATGCAAGAGTCGAAGTCCTCGAATGTTGTTGCCCCGCGCGAACGGGTTGCCCTCCTAAC 388 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 ACAATTCGGCGATGTATTAATCATTATT-TCACCTTTACTTAATGGATTGTTTAAAGTTG 957 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ACAATTCGGCGATGTATTAATCATTATT-TCACCTTTACTTAATGGATTGTTTAAAGTTG 396 consensus_10908#3 ATGGTGAATTCGAATCTGGATCATATTCAAAGGCTAACAGTTACGCCAAACTTTCGAGTT 371 consensus_10908#2 TGCCACTGCTCTAGGAGAGGATGAGTCGTTTGATGACAAATCCTTAGTCCTGCTTCAGTC 448 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 AAGTACGACGTGAAGCCCAGGTTGGTTTATTCGGACCAATTGTGGAGAATGCTATTTTAA 1017 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 AAGTACGACGTGAAGCCCAGGTTGGTTTATTCGGACCAATTGTGGAGAATGCTATTTTAA 456 consensus_10908#3 CTCCACCTGTTCAAGTACCAAT---TTATCTGCGAAATGGTGACGAGAACTTTGTCCAGG 428 consensus_10908#2 ACTTCTACATTTCCTTGTCTCAGAATCCTTCAAGATCGAGTGGTCACAACTTCGATATGA 508 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 CTGCAAATGTTCTACCAGGTCTAGTTCGTGCTACAGCTATTAATGCTAGTCGTGCTGTTC 1077 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 CTGCAAATGTTCTACCAGGTCTAGTTCGTGCTACAGCTATTAATGCTAGTCGTGCTGTTC 516 consensus_10908#3 AACCAACTAACCTGGCTGCTTCAAACCTCTCT-------CCTAAACTAAACACGTTATTC 481 consensus_10908#2 GCAACATTTAATGCAGCTATGGTTTCTGTTCGAAAAGTTAAAACATTCGTACCTCCCCGT 568 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 GAGCTATCAAACCGGGATATCGTCATCCATATGAAGATCGTGCTTCAAGTCTACGGCAAA 1137 consensus_10908#4 -------------------------TCCATATGAAGATCGTGCTTCAAGTCTACGGCAAA 35 consensus_10908#1 GAGCTATCAAACCGGGATATCGTCATCCATATGAAGATCGTGCTTCAAGTCTACGGCAAA 576 consensus_10908#3 GGTCAAAGATACTGCTGTAATTCCTTCCACTGTCCAAACAT-CTCCACTTCCACAAAAAT 540 consensus_10908#2 TATTTTTCCA-TGTTTATCTCCTTTATACTCAATATATTCGCCCTCGACTTCATCCCAAG 627 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 TAATATCCAAGTATACATTGTCAACCTGCTTTGAAGAATATGCTGCATCGATACTTTTGC 1197 consensus_10908#4 TAATATCCAAGTATACATTGTCAACCTGCTTTGAAGAATATGGTGCATCGATACTTTTGC 95 consensus_10908#1 TAATATCCAAGTATACATTGTCAACCTGCTTTGAAGAATATGCTGCATCGATACTTTTGC 636 consensus_10908#3 TTATTTTCACTGAACCATTCTTTAATTACGATGAAAAAGTCGTTTCT------------- 587 consensus_10908#2 TGAACAACACAATCCCATTAAC-------TTCAAATATTTTACAGGATTACCCAATCCAT 680 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 CAAATTCAAAAAGTGGCTCGATTATGTCATTGGAACAACTAATTACTCGCCTGCATGATG 1257 consensus_10908#4 CAAACTCAAAAAGTG--------------TTGAAACTGTT-------------------- 121 consensus_10908#1 CAAATTCAAAAAGTG--------------TTGAAACTGTTTAGCTTCATCCTATGCTCGA 682 consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 CCATCACGTCTTTCATACTATCAGTTAGAATTTGAAAATTTTGTAG-----CTGGTCTTG 735 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 AAGTAAAACGTTAAACCCTTACTTCCATAACTACTTCTATTCTAAATAAATTTATGCACC 1317 consensus_10908#4 -------------------------------TAGCTTCATCCTAT---------TGCACC 141 consensus_10908#1 ATTGAATTATTTGTGTATGCAACTCTCGTACAGGCTAGGTTTTTT------TGCTTTATT 736 consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 GCTGGGAGGTTGATTTACTTAAGCATAAAGGATTTCGTGGTGGGTTAGAATGTAGTGGAC 795 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 ACAATCAGTC-AAATTTATCATTGAATCGAGGTGTAGTCAGTAAATCAGGTGGTGTAAA- 1375 consensus_10908#4 ACAATCAGTC-AAATTTATCATTGAATCGAGGTGTAGTCAGTAAATCAGGTGGTGT---- 196 consensus_10908#1 TTAATGTGTTTAGACTTTTCATAAATTCTTGAATAGGTCGCTTCATTTATTTAAATAAAT 796 consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 GTGCTGGTCTATCCACACCATATTATGCAACATCTACTTTAGAAGTTATTTTCCATGTTT 855 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 ATTTTCTGATGTTCCACCTATTACACA-AGAAACTTATCATAGTTATTCGCAAAACTCAA 1434 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 ATCTGTTGATTGCTTGCCAACAGCATGCATGTATAAATGATGATCATTAATTCCCTTCCA 856 consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 CAACAAGAATGCCTTCATCTACTCAAGAAGATTTAAAGTATAAACATTT----------- 904 consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 CGTCTGATCTCGCTCCTAATGATGTAACTAACTAATAATAATACTCT------------- 1481 consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 TCGATATTATTGTAACTATCAATTTTTGTCTGTTCAAGCATAAATGTACTGAATTCCTCT 916 consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ------------------------------------------------------------ consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 ------------------------------------------------------------ consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 GCATATTTCAATTACTTCTTATTGATCTATAGGCTCGATTATGTCATTGGAACAACTAAT 976 consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ------------------------------------------------------------ consensus_10908#5 ------------------------------------------------------------ consensus_10908#0 ------------------------------------------------------------ consensus_10908#4 ------------------------------------------------------------ consensus_10908#1 TACTCGCCTGCATGATGAAGTAAGACGTTAAACCCTTACTTCCATAACTACTTCTATTCT 1036 consensus_10908#3 ------------------------------------------------------------ consensus_10908#2 ------------------- consensus_10908#5 ------------------- consensus_10908#0 ------------------- consensus_10908#4 ------------------- consensus_10908#1 AAATAAATTTAGTGAGTGT 1055 consensus_10908#3 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||