These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1426 fasta sequence [AGAAGAAGCGGAAGAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAGAAGCGGAAGAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAGAAGAAGAAGAAGCGGAAGAAGAAGAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAATCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAACAACAAGAGGAAGAATCGGAAGAAGAACAAAAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAAAATTGAAAGAAGCGGAAGATGAAGGACAAGAGTAAACCAAATAGTAAAGATATATCAACTAGATAATATAATATATTATGTAATCATAATAATAAATATTCAATTATATTCCAAAAAGGAAAAGAAAAGTTGAAATAGTCAGATAAATGATATGACATATTAATAATAGTAATGGTAATATATGAATTT-CCAAAGAAATAGTTGAATCTGTCTATCTATATTAGTTGATTACATATAGAGTGCACTGTTTACAAATTCACTTTCAGTAAATAATGCTTGTAATTGATCATTTTTAGGTGTTGCTTTAAATACTTCAAATAAGATTTGTAAACGTGCACAACATATTACATAACTATCAAATGGTACACTACCATCACGACGTGAAAAACGTAATACCAATGTAGAAAATGTTGCATTATTAATGGAAAAACCAACATG-TTTCAATGCA-TTTCTTAA-TTCAATCGAATTCATTGAACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATACACGTAACAGATCCCATAATTTTCGAAATTCTGAAAAGTTTAACATACCAGAACGATCGACATCCATCATAGCAATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAATCTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTCTACAATATCAATATCCAGATAGATACACAAAATAAAAAGATGTAAATGGATACAATATCCATTAAGAAAAGAATACAATTGTATAAGTCAATCACATTCATAGGAACACACACACACACAGAGCGAGAGACAGAAAGGGAAAGGGAGAATAGAAACCA-TATTCACACAAATCAGAGCATCATTTTATACGATTCATTAGTTGTCTACTGAAAAACCAGATTGGTAGTAGTTGCTGCATAACTTATTATATTGAATACAATCAATTGAATCACAAGTGACATAACACATCAATCAATGAAAAAGTAAACAATCATCATGCGATAGATGTCTAGTTTATCCCTATTCATAG] [+] EMBL CD169071 [AGAAGAAGCGGAAGAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAGAAGCGGAAGAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAGAAGAAGAAGAAGCGGAAGAAGAAGAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAATCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAACAACAAGAGGAAGAATCGGAAGAAGAACAAAAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAAAATTGAAAGAAGCGGAAGATGAAGGACAAGAGTAAACCAAATAGTAAAGATATATCAACTAGATAATATAATATATTATGTAATCATAATAATAAATATTCAATTATATTCCAAAAAGGAAAAGAAAAGTTGAAATAGTCAGATAAATGATATGACATATTAATAATAGTAATGGTAATATATGAATTT CCAAAGAAATAGTTGAATCTGTCTATCTATATTAGTTGATTACATATAGAGTGCACTGTTTACAAATTCACTTTCAGTAAATAATGCTTGGTATTGATCATTTTTAGGTGTTGC ] [+] EMBL CD169685 [ AGAAGCGGAAGAAGAACAACAAGAAGAAGAATCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAACAACAAGAGGAAGAATCGGAAGAAGAACAAAAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAAAATAGAAAGAAGCGGAAGATGAAGGACAAGAGTAAACCAAATAGTAAAGATATATCAACTAGATAATATAATATATTATGTAATCATAATAATAAATATTCAATTATATTCCAAAAAGGAAAAGAAAAGTTGAAATAGTCAGATAAATGATATGACATATTAATAATAGTAATGGTAATATATGAATTT CCAAAGAAATAGTTGAATCTGTCTATCTATATTAGTTGATTACATATAGAGTGCACTGTTTACAAATTCACTTTCAGTAAATAATGCTTGTAATTGATCATTTTTAGGTGTTGCTTTAAATACTTCAAATAAGATTTGTAAACGTGCACAACATATTACATAACTATCAAATGGTACACTACCATCACGACGTGAAAAACGTAATACCAATGTAGAAAATGTTGCATTATTAATGGAAAAACCAACATG TTTCAATGCA TTTCTTAA TTCAATCGAATTCATTGAACCACTTTTATCCGTATCAAATT ] [+] EMBL CD169709 [ AGAAGCGGAAGAAGAACAACAAGAAGAAGAATCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAACAACAAGAGGAAGAATCGGAAGAAGAACAAAAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAAAATTGAAAGAAGCGGAAGATGAAGGACAAGAGTAAACCAAATAGTAAAGATATATCAACTAGATAATATAATATATTATGTAATCATAATAATAAATATTCAATTATATTCCAAAAAGGAAAAGAAAAGTTGAAATAGTCAGATAAATGATATGACATATTAATAATAGTAATGGTAATATATGAATTT CCAAAGAAATAGTTGAATCTGTCTATCTATATTAGTTGATTACATATAGAGTGCACTGTTTACAAATTCACTTTCAGTAAATAATGCTTGTAATTGATCATTTTTAGGTGTTGCTTTAAATACTTCAAATAAGATTTGTAAACGTGCACAACATATTACATAACTATCAAATGGTACACTACCATCACGACGTGAAAAACG ] [+] EMBL CD069286 [ AACAACAAGAAGAAGAATCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAACAACAAGAGGAAGACTCGGAAGAAGAACAAAAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAACAATTGAAAGAAGCGGAAGATGAAGGACAAGAGTAAACCAAATAGTAAAGATATACCAACTAGATAATATAATATATTATGTAATCATAATAATAAATATTCAATTATATTCCAAAAAGGAAAAGAAAAGTTGAAATAGTCAGATAAATGATATGACATATTAATAATAGTAATGGTAATATATGAATTT CCAAAGAAATAGTTGAATCTGTCTATCTATACTAGTTGATTACATATAGAGTGCACTGTTTACAAATTCACTTTCAGTAAATAATGCTTGTAATTGATCATTTTTAGGTGTTGCTTTAAATACTTCAAATAAGATTTGTAAACGTGCACA ] [+] EMBL CD140393 [ GAAGAAGAACAAAAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAAAATTGAAAGAAGCGGAAGATGAAGGACAAGAGTAAACCAAATAGTAAAGATATATCAACTAGATAATATAATATATTATGTAATCATAATAATAAATATTCAATTATATTCCAAAAAGGAAAAGAAAAGTTGAAATAGTCAGATAAATGATATGACATATTAATAATAGTAATGGTAATATATGAATTT CCAAAGAAATAGTTGAATCTGTCTATCTATATTAGTTGATTACATATAGAGTGCACTGTTTACAAATTCACTTTCAGTAAATAATGCTTGTAATTGATCATTTTTAGGTGTTGCTTTAAATACTTCAAATAAGATTTGTAAACGTGCAC ] [+] EMBL CD067503 [ ggggGAAGAACAAAAAGAAGAAGAAGCGGAAGAAGAACAATCGGAAGAAGAAGCGGAAGAATAAAAATTGAAAGAAGCGGAAGATGAAGGACATGAGTAAACCAAATAGTAAAGATATATCAACTAGATAATATAATATATTATGTAATCATAATAATAAATATTCAATTATATTCCAAAAAGGAAAAGAAAAGTTGAAATAGTCATATAAATGATAT ] [+] EMBL CD066818 [ AAAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAAAATTGAAAGAAGCGGAAGATGAAGGACAAGAGTAAACCAAATAGTAAAGATATATCAACCAGATAATATAATATATTATGTAATCATAATAATAAATATTCAATTATATTCCAAAAAGGAAAAGAAAAGGTGAAATAGTCAGATAAATGATATG ] [+] EMBL CD066703 [ AAAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAAAATTGAAAGAAGCGGAAGATGAAGGACAAGAGTAAACCAAATAGTAAAGATATATCAACCAGATAATATAATATATTATGTAATCATAATAATAAATATTCAATTATATTCCAAAAAGGAAAAGAAAAGTTGAAATAGTCAGATAAATGATATGACATATTAATAATAGTAATAGTAATATATGAATTT CCAAAGAAATAGTTGAATCTGTCTATCTATATTAGTTGATTACATATAGAGTGCACTGTTTACAAATTCACTTCCAGT ] [+] EMBL CD066704 [ AAAAGAAAAAAAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAAAAATTGAAAGAAGCGGAAGATGAAGGACAAGAGTAAACCAAATAGTAAAGATATATCAACCAGATAATATAATATATTATGTAATCATAATAATAAATATTCAATTATATTCCAAAAAGGAAAAGAAAAGTTGAAATAGTCAGATAAATGATATGACATATTAATAATAGTAATAGTAATATATGAATTT CCAAAGAAATAGTTGAATCTGTCTATCTATATTAGTTGATTACATATAGAGTGCACTGTTTACAAATTCACTTCCAGTAAATAATGCTTGTAATTGATCATTTTTAGGTGTTGCTTTAAATACTTCAAATAAGATTTGTAAACGTGCACA ] [+] EMBL CD067060 [ ATAGTAAAGATATATCAACTAGATAATATAATATATTATGTAATCATAATAATAAATATTCAATTATATTCCAAAAAGGAAAAGAAAAGTTGAAATAGTCAGATAAATGATATGACATATTAATAATAGTAATGGTAATATATGAATTT CCAAAGAAATAGTTGAATCTGTCTATCTATATTAGTTGATTACATATAGAGTGCACTGTTTACAAATTCACTTTCAGTAAATAATGCTTGTAATTGATCATTTTTAGGTGTTGCTTTAAATACTTCAAATAAGATTTGTAAACGTGCACAACATATTACATAACTATCAAATGGTACACTACCATCACGACGTGAAAAACGTAATACCAATGTAGAAAATGTTGCATTATTAATGGAAAAACCAACATG TTTCAATGCA TTTCTTAA TTCAATCGAATTCATTGAACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATACACGTAACAGA ] [-] EMBL AA559719 [ TGAATTTCCCAAAGAAATAGNTGAATCTGTCTATCTATATTAGTTGATTACATATAGAGTGCACTGTTTACAAATTCACTTTCAGTAAATAATGNTTGTAATTGATCATTTTTAGGTGTTGCTTTAAATACTTCAAATAAGATTTGTAAACGTGCACAACATATTACATAACTATCAAATGGTACACTACCATCACGACGTGNAAAACGTAATACCNATGTAGNAAATGTTGCATTATTAATGGNAAAACCAACATGTTTTCAATGCATTTTCTTAATTTCAATCGAATTCATTGAACCACTT ] [-] EMBL CD169182 [ TAA TTCAATCGAATTCATTGAACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATACACGTAACAGATCCCATAATTTTCGAAATTCTGAAAAGTTTAACATACCAGAACGATCGACATCCATCATAGCAATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAATCTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACCGGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTCTACAATATCAATATCCAGATAGATACACAAAATAAAAAGATGTAAATGGATACAATATCCATTAAGAAAAGAATACAATTGTATAAGTCAATCACATTCATAGGAACACACACACACACAGAGCGAGAGACAGAAAGGGAAAGGGAGAATAGAAACCA TATTCACACAAATCAGAGCATCATTTTATACGATTCATTAGTTGTCTACTGAAAAACCAGATTGGTAGTAGTTGCTGCATAACTTATTATATTGAATACAATCAATTGAATCACAAGTGACATAACACATCAATCAATGAAAAAGTAAACAATCATCATGCGATAGATGTCTAGTTTATCCCTATTCATgg] [-] EMBL CD169016 [ AACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATACACGTAACAGATCCCATAATTTTCGAAATTCTGAAAAGTTTAACATACCAGAACGATCGACATCCATCATAGCAATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAATCTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTCTACAATATCAATATCCAGATAGATACACAAAATAAAAAGATGTAAATGGATACAATATCCATTAAGAAAAGAATACAATTGTATAAGTCAATCACATTCATAGGAACACACACACACACAGAGCGAGAGACAGAAAGGGAAAGGGAGAATAGAAACCA TATTCACACAAATCAGAGCATCATTTTATACGATTCATTAGTTGTCTACTGAAAAACCAGATTGGTAGTAGTTGCTGCATAACTTATTATATTGAATACAATCAATTGAATCACAAGTGACATAACACATCAATCAATGAAAAAGTAAACAATCATCATGCGATAGATGTCTAGTTTATCCCTATTCATA ] [-] EMBL CD169201 [ TGTTTAAATGCAGACTTCCATACACGTAACAGATCCCATAATTTTCGAAATTCTGAAAAGTTTAACATACCAGAACGATCGACATCCATCATAGCAATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAATCTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTCTACAATATCAATATCCAGATAGATACACAAAATAAAAAGATGTAAATGGATACAATATCCATTAAGAAAAGAATACAATTGTATAAGTCAATCACATTCATAGGAACACACACACACACAGAGCGAGAGACAGAAAGGGAAAGGGAGAATAGAAACCA TATTCACACAAATCAGAGCATCATTTTATACGATTCATTAGTTGTCTACTGAAAAACCAGATTGGTAGTAGTTGCTGCATAACTTATTATATTGAATACAATCAATTGAATCACAAGTGACATAACACATCAATCAATGAAAAAGTAAACAATCATCATGCGATAGATGTCTAGTTTATCCCTATTCATA ] [-] EMBL CD169183 [ ATCAGTCAATGGTTTGACAACAGTCTACAATATCAATATCCAGATAGGTACACAAAATAAAAAGATGTAAATGGATACAATATCCATTAAGAAAAGAATACAATTGTATAAGTCAATCGCATTCATAGGAACACACACACGGGCAGAGCGAGAGACAGAAAGGGAAAGGGAGGATACATACAACCCTTCAAAAAAATCAGAGCATCGTTTTATACGATTCATTAGTTGTCTACTGAAAAACCAGATTGGTAGTAGTTGCTGCATAACTTATTATATTGAATACAATCAATTGAATCCCCCCCCCCATAGCACATCAATCAATGAAAAAG ] consensusID : consensus_10941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1034 fasta sequence [GGAAAAACCAACATGTTTCAACGCATTTCTAAATTCAATCGAATTCATTGAACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATACACGTAACAGATCCCATAATTTTCGAAATTCTGAAAAGTTTAACGTACCAGAACGATCGACATCCATCATAGCAATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAATCTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTATTATCATCCAAATTGAGTGTCGGTTCCGTTTCACCGATCTCTTCATCTAATTCTTGAGTTGTACGCGGTTTTTCTGAGAATATACGCAGCATAAAATCAGCCTCTTCATTTGGTTGAAATGTTGACGGGATAATTGCATATCGTCCTGTATCTAATCTATGTCGACCACATACTTCACGTAAATTGATAAATGCTGGTGAACGTGCAACTGATGCATTGTATTTGAAAAATTTCATATCCAATGTACCTTGTTGTTGTTCCGGTAATTTATAAATAGCATAACCAATAGTTAGTAGATCAGCACCTTCTCGTCTCATTTTTCTTCTATTCTTTTGCATTAAACCAACAATTAATGTTCCTTTATTTTCATCATCATCTTCATCTGGATCTTCAACAGTTACTACATATTGTGGATTTATCCAAAATGTATCAAGAAAATTACGACATCCACCGGCTGATACAGAGT-GCTG-CAACAACCTTCTTCAATACACATTTCCCAAACACGATTTCCGTCCATTTCACCCATAGACTGTGGTCCAAGATGACATATTTCAAGTTTTTCATAGTTTGATATAAAATCCTGATAAGACATCCAAAATTCACCATCATCATCAAATGTTAAACCAAGTTGTTGCCTTTGTTCTGGTGACTCGTGGAAATGTCCACAGTGACTCGTGGGTGACTCGTG] [-] EMBL CD140360 [GGAAAAACCAACATGTTTCAACGCATTTCTAAATTCAATCGAATTCATTGAACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATACACGTAACAGATCCCATAATTTTCGAAATTCTGAAAAGTTTAACGTACCAGAACGATCGACATCCATCATAGCAATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAATCTCGTGTAAATGCACAATTCAATATACCACGTAATTCATCTGCATCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTATTATCATCCAAATTGAGTGTCGGTTCCGTTTCACCGATCTCTTCATCTAATTCTTGAGTTGTACGCGGTTTTTCTGAGAATATACGCAGCAT ] [-] EMBL CD129847 [ TCGAATTCATTGAACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATACACGTAACAGATCCCATAATNTTCGAAATTCTGAAAAGTTTAACATACCAGAACGATCGACATCCATCATAGCAATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAATCTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTATTATCATCCAAATTGAGTGTCGGTTCCGTTTCACCGATCTCTTCATCTAATTCTTGAGTTGTACGCGGTTTTTCTGAGAATATACGCAGCATAAAATCAGCCTCTTCATTTGGTTGAAATGTTGACGGGATAATTGCATATCGTCCTGTATCTAATCTATGTCGACCACATACTTCACGTAAATTGATAAATGCTGGTGAACGTGCAACTGATGCATTGTATTTGAAAAATTTCATATCCAATGTACCTTGTTGTTGTTCCGGTAATTTATAAATAGCATAACCAATAGTTAGTAGATCAGCACCTTCTCGTCTCATTT ] [+] EMBL CD192041 [ AATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAATCTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCGTCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTATTATCATCCAAATTGAGTGTCGG ] [-] EMBL CD192831 [ ATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAATCTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTATTATCATCCAAATTGAGTGTCGGT ] [-] EMBL CD192823 [ ATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAATCTGGTGTAAATGCACAATTCAATATATCACGTAATTCATATGCATCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTATATGTAATGCTTAAACTTGTACATCAGT ] [-] EMBL CD067376 [ AAAAGTAAAATCTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTATTATCATCCAAATTGAGTGTCGGTTCCGTTTCACCGATCTCTTCATCTAATTCTTGAGTTGTACGCGGTTTTTCTGAGAATATACGCAGCATAAAATCAGCCTCTTCATTTGGTTGAAATGTTGACGGGATAAT ] [-] EMBL CD067191 [ TGCATATCGTCCTGTATCTAATCTATGTCGACCACATACTTCACGTAAATTGATAAATGCTGGTGAACGTGCAACTGATGCATTGTATTTGAAAAATTTCATATCCAATGTACCTTGTTGTTGTTCCGGTAATTTATAAATAGCATAACCAATAGTTAGTAGATCAGCACCTTCTCGTCTCATTTTTCTTCTATTCTTTTGCATTAAACCAACAATTAATGTTCCTTTATTTTCATCATCATCTTCATCTGGATCTTCAACAGTTACTACATATTGTGGATTTATCCAAAATGTATCAAGAAAATTACGACATCCACCGGCTGATACA CGTCGCTGCCAACAACCTTCTTCAATACACATTTCCCAAACGCGATTTCCGTCCATTTCACCCATAGACTGTGGTCCAAGATGACATATTTCAAGTTTCTCATAGTTT ] [+] EMBL CD167709 [ tcacGAGT GCTG CAACAACCTTCTTCAATA ACATTTCCCAAACACGATTTCCGTCCATTTCACCCATAGACTGTGGTCCAAGATGACATATTTCAAGTTTTTCATAGTTTGATATAAAATCCTGATAAGACATCCAAAATTCACCATCATCATCAAATGTTAAACCAAGTTGTTGC ] [+] EMBL CD068599 [ GAGT GCTG CAAC ACCTTCTTC ATACACATTTCCCAAACACGATTTCCGTCCATTTCACCCATAGACTGTGGTCCAAGATGACATATTTCAAGTTTTTCATAGTTTGATATAAAATCCTGATAAGACATCCAAAATTCACCATCATCATCAAATGTTAAACCAAGTTGTTGCCTTTGTTCTGGTGACTCGTGGAAATGTCCACAGTGACTCGTGGGTGACTCGTG] consensusID : consensus_10941#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 393 fasta sequence [AACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATACACGTAACAGATCCCATAATTTTCG-AAATTCTGAAAAGTTTAACATACCAGAACGATCGACATCCATCATAGCAATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAAT-CTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTTGTCGGTTCCGTTTCACCGATCTCTTCATCTAATTCTTGAGTTGTACGCGGTTTTTCTGAGAATATACGCAGCATAAAATCAGCCTCGTTGTGATTTG] [-] EMBL CD196769 [AACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATACACGTAACAGATCCCATAATTTTCG AAATTCTGAAAAGTTTAACATACCAGAACGATCGACATCCATCATAGCAATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAAAT CTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACCAGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGACAACAGTTGTCGGTTCCGTTTCACCGATCTCTTCATCTAATTCTTGAGTTGTACGCGGTTTTTCTGAGAATATACGCAGCATAAAATCAGCCTCGTTGTGATTTG] [-] EMBL CD069071 [ aacATTGTTTAAATGCAGACTTCCATACACGTAACAGATCCCATAATTTTCGCAAATTCTGAAAAGTTTAACATACCAGAACGATCGACATCCATCATAGCAATCATACTTCTACACGATTCC AACTGAATCCATCAAGAGTAAAATACTCGTGTAAATGCAC ATTCAATA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10941#1 ------------------------------------------------------------ consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 AGAAGAAGCGGAAGAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGA 60 consensus_10941#1 ------------------------------------------------------------ consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 AGAAGAAGCGGAAGAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGA 120 consensus_10941#1 ------------------------------------------------------------ consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 AGAAGAAGAAGAAGAAGCGGAAGAAGAAGAAGAAGAAGAAGCGGAAGAAGAACAACAAGA 180 consensus_10941#1 ------------------------------------------------------------ consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 AGAAGAATCGGAAGAAGAACAACAAGAAGAAGAAGCGGAAGAAGAACAACAAGAGGAAGA 240 consensus_10941#1 ------------------------------------------------------------ consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 ATCGGAAGAAGAACAAAAAGAAGAAGAAGCGGAAGAAGAACAACAAGAAGAAGAAGCGGA 300 consensus_10941#1 ------------GGAAAAACCAACATGTTTCAACGCATTTCTAAATTCAATCGAATTCAT 48 consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 AGAAGAAAAATTGAAAGAAGCGG-AAGATGAAGGACAAGAGTAAACCAAATAGTAAAGAT 359 consensus_10941#1 TGAACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATACACGTAACAGATC 108 consensus_10941#2 --AACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATACACGTAACAGATC 58 consensus_10941#0 ATATCAACTAGATAATATAATATATTATGTAATCATAATAATAAATATTCA-ATTATATT 418 * * *** ** * *** * *** * * *** * * * ** consensus_10941#1 CCATAATTTTC--GAAATTCTGAAAAGTTTAACGTACCAGAACGATCGACATCCATCATA 166 consensus_10941#2 CCATAATTTTC--GAAATTCTGAAAAGTTTAACATACCAGAACGATCGACATCCATCATA 116 consensus_10941#0 CCAAAAAGGAAAAGAAAAGTTGAAATAGTCAGATAAATGATATGAC--ATATTAATAATA 476 *** ** **** ***** * * * * ** * ** ** *** consensus_10941#1 GCAATCATACTTCTACACGATTCCAAA-------CTGAATCCATCAAAAGTAAAATCTCG 219 consensus_10941#2 GCAATCATACTTCTACACGATTCCAAA-------CTGAATCCATCAAAAGTAAAATCTCG 169 consensus_10941#0 GTAATGGTAATA-TATGAATTTCCAAAGAAATAGTTGAATCTGTCTATCTATATTAGTTG 535 * *** ** * ** ******* ****** ** * * * * consensus_10941#1 TGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACC 279 consensus_10941#2 TGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATCATCACC 229 consensus_10941#0 ATTACATATAGAGTGCACTGT-TTACA-AATTCACTTTCAGTAAATA-ATGCTTGTAATT 592 ** ** * * * ** * * * ** ****** * ** ** * * * * * consensus_10941#1 AGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGAC 339 consensus_10941#2 AGCGACTTTATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATGGTTTGAC 289 consensus_10941#0 GATCATTTT--TAGGTGTTGCTTTAAATACTTCAAAT--AAGATTTGTAAACGTGCACAA 648 * *** * ** * * *** **** * * * ** ** ** * * consensus_10941#1 AACAGTAT-TATCATCCAAATTGAGTGTCGGTTCCGTTTCACCGATCTCTTCAT-CTAAT 397 consensus_10941#2 AACAGT-------------------TGTCGGTTCCGTTTCACCGATCTCTTCAT-CTAAT 329 consensus_10941#0 CATATTACATAACTATCAAATGGTACACTACCATCACGACGTGAAAAACGTAATACCAAT 708 * * * * * * * * ** * *** consensus_10941#1 TCTTGAGTTGTACGCGGTTTTTCTGAGAATATACGCAGCATAAAATCAGCCTCTTCATTT 457 consensus_10941#2 TCTTGAGTTGTACGCGGTTTTTCTGAGAATATACGCAGCATAAAATCAGCCTCGTTGT-- 387 consensus_10941#0 GTAGAAAATGT-TGCATTATTAATGGAAAAACCAACATGTTTCAATGCATTTCTTAATTC 767 * *** ** * ** ** ** * ** * *** ** * * consensus_10941#1 GGTTGAAAT-GTTGACGGGATAAT-TGCATATCGTCCTGTAT-----CTAATCTATGTCG 510 consensus_10941#2 GATTTG------------------------------------------------------ 393 consensus_10941#0 AATCGAATTCATTGAACCACTTTTATCCGTATCAAATTGTTTAAATGCAGACTTCCATAC 827 * consensus_10941#1 ACCACATACTTCACGTAAATTGATAAATGCTGGTGAACGTGCAACTGATGCATTGTATTT 570 consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 ACGTAACAGATCCCATAATTTTCGAAATTCTGA--AAAGTTTAACATAC-CAGAACGATC 884 consensus_10941#1 GAAAAATTTCATATCCAATGTACCTTGTTGTTGTTCCGGT---AATTTATAAATAGCATA 627 consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 GACATCCATCATAGCAATCATACTTCTACACGATTCCAAACTGAATCCATCAAAAGTAAA 944 consensus_10941#1 ACCAATAGTTAGTAGATCAG-CACCTTCTCGTCTCATTTTTCTTCTATTCTTTTGCATTA 686 consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 ATCTCGTGTAAATGCACAATTCAATATATCACGTAATTCATCTGCATCAATTTCACCATC 1004 consensus_10941#1 A--ACCAACAATTAATGTTCCTTTATTTTCATCAT-CATCTTCATCTGGATCT-TCAACA 742 consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 ATCACCAGCGACTT-TATTGAATGCTTTCTGTAATGCTTCTACTTGTACATCAGTCAATG 1063 consensus_10941#1 GTT--ACTACATATTGTGG-ATTTAT-CCAAAATGTATCAAGAAAATTACGACATCCACC 798 consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 GTTTGACAACAGTCTACAATATCAATATCCAGATAGATACACAAAATAAAAAGATGTA-- 1121 consensus_10941#1 GGCTGATACAGAGTGCTGCAACAACCTTCTTCAATACACATTTCCCAAACACGATT-TCC 857 consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 AATGGATACAATATCCATTAAGAAAAGAATACAAT-TGTATAAGTCAATCACATTCATAG 1180 consensus_10941#1 GTCCATTT-CACCCATAGACTGTGGTCCAAGATGACATATTTCAAGTTTTTCATAGTTTG 916 consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 GAACACACACACACACAGAGCGAGAGACAGAAAGGGAAAGGGAGAATAGAAACCATATTC 1240 consensus_10941#1 ATATAAAATCCTGATAAGACATC-CAAAATTCACCATCATCATCAAATGTTAAACCAAGT 975 consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 ACACAAA-TCAGAGCATCATTTTATACGATTCATTA--GTTGTCTACTGAAAAACCAGAT 1297 consensus_10941#1 TGTTGCCTTTGTTCTGGTGACTCGTGGAAATGTCCACAGTGACTCGTGGGTGACTCGTG- 1034 consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 TGGTAGTAGTTGCTGCATAACTTATTATATTGAATACAATCAAT--TGAATCACAAGTGA 1355 consensus_10941#1 ------------------------------------------------------------ consensus_10941#2 ------------------------------------------------------------ consensus_10941#0 CATAACACATCAATCAATGAAAAAGTAAACAATCATCATGCGATAGATGTCTAGTTTATC 1415 consensus_10941#1 ----------- consensus_10941#2 ----------- consensus_10941#0 CCTATTCATAG 1426 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||