These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 2344 fasta sequence [CCAACTAGGGCAAATCAGGAAATTATTATCACAAAATAATTACAACCAACAACAAAAGTAGAACAAACCAGTACACTATTCTCAATGTATTTAATTAATAAGCGAAACAAAGCAAAACAAAACAAAACCAGAATACAACAACAATTTAAAGTATAAATTACATTAGTTCCAGGATACAGGGTAAACAAGGGGGGGAAATAAGATGATGGATTCTTCACGGTAGTGGTAAAAAGAAAACCAACAACATTCACTACTATTCAAACTCACAATAATAAGTAATATTCTTACCATTTTGACCTATTTTAAGCAACACAGTGAACAGAAGACAAAAAGAAAGAGAGGGAGGGAAAGAACAAGGCATAGAAAGAGAGTAAGGATAAATGAATCCCTATTGATTACAATTATGGTGATGATGACGATTCATTAAAAGAGGTTGAGTTGGATATGCGTACCCGTGAGCGTAAACGCAAAATAACACTACTTGATGTAATTCAAAGAATCAAAATAGGTTGCTTTTTTTAATTATTCATCTAAAACGATAGGATCATATTGAATTAATGAAGAAAGCAAATGAAGCAAAAAGTAACCAACTGTGAAACTAATGTGGTGATTATAACAAACTAAGGACAGTAACAAAGAAAATACAAGCACCGTGTATGTATCTGTGTGTGTTCATAATTTGGCCCCGTCTAACTTTCTTATTTTCATACATAAAATCTATATCCAACTTTATATGTAATAGGGTTTATACTGCGTGTGAATAGAAGTTATACACACATATACACGATGCATTACACTAATATATAGGCCAGAAATTGTTGAAGTATTTCAAGGAAGCACTAATCATAACACATTTTAAAGGGATCCTCGCAAGAATAAATACCAGATTGAGATTGATGTAAATATAAATGAATGTTTTTTTTT-AAAAAAAATTGTTCTCCAACAATAAAAGTACATAAGAAGAGAGAGTAAGGCATTCAAAGAATTTCATGCTGCTAAGACTAAGAAAGTAT-TTGCTTGGAATAAACAAAACCAAA-ATAAGGGATTAAACTAGACCAGCAATCTAGGCACCAACCCATATCGATAATGCTCATATTATCATCATTAATATCAATGTAGTAAACTGGATACTTCTTTATGAATGTGACATAGATATTCTGTGTATGAAATCGAATTACTACTGCATCGATCCTCGACCATGAAACGTCGAAACCATAGTTCACTTTTATCTCCAGGACGTACAACCAATAACCGAGAATAATGCCAACAATTTTTACGAACTTTTCTCAGCAATGTACACAGATTACGTGAAATTTCGTTATCAAAATTACACAAATCATAGATTTTTTCTGATTCAAAATGTTCCGGATTTTGAACATTGAACACTGCTTGAATCCATTCCGATGAAATATTTGGACCGATCCACATGATAAGATAAATTCCATTATCCAATAAATAAGCTGCGTCCATTTGTAAACGATCATATGAACAGCGTATAGCAGCTGGAGGATAAGGTATATCACCTTCGAAATTCAGTGAAAGATCATGAATAGGATATAAGTGAGGATAAATATAACAATTGGATTGTTTAACGTCCATTTGGTTGACCAAAAACATTTGCCAACAACGATCATCAATTGTAATACCATCAGCAGGACTAAAGGCTTCAGTTTTCATAAGACATTGTATGTACAAAGGAAATACTTTCATATTTCGTGGTAATACTAATTCACTAGGATTCGAATTTACATCATTCGGACCACAAGCACAATGACGACGATAAGCAGCCAAGG-TGTTAGCAGCTCTTGTTGTTAAATCATCCATTACTTGTGAATGTGTACGGTTGAGTAGAGAACGCATTGAATATTTACTCAACCAATTCATATGTGCGTCTAATTCGACAAGACGAAATATATCAGGTATCATACTTGTCACTGGAATTGACAGATTATGAATACGTAGCCTTCGCTGTCCAGATACTGAGGTATAAAGACATGCAACTTGAATGAATACGAGTTCACCTTCTTGAAGTTTATCATCATGACGTAATTCCGCTGTGATCGCCATATCTGAACTAACACTAGCCAATTCAACATCAGTTGTATTAGGTAGGTAACAATTACCAAAGAATTCAACAGGTCTAATACCAGTGCTTGTTCGAACACGCATAACAGCGTTGAAAGCTTGTAGGTTGGTTAAAGTACGTTGGAGATCGGCCAAAAACTGATGACCTTGTAGGTCAGCCTGGAAACAGTTATATTTGAATAAACGACCAGATGTTATTCTGGGCACTTCGGCTAAAGAAGCAATATCAACAAATGAATTGGGAAAAAGAAAAAGATCT] [+] EMBL CD148719 [CCAACTAGGGCAAATCAGGAAATTATTATCACAAAATAATTACAACCAACAACAAAAGTAGAACAAACCAGTACACTATTCTCAATGTATTTAATTAATAAGCGAAACAAAGCAAAACAAAACAAAACCAGAATACAACAACAATTTAAAGTATAAATTACATTAGTTCCAGGATACAGGGTAAACAAGGGGGGGAAATAAGATGATGGATTCTTCACGGTAGTGGTAAAAAGAAAACCAACAACATTCACTACTATTCAAACTCACAATAATAAGTAATATTCTTACCATTTTGACCTATTTTAAGCAACACAGTGAACAGAAGACAAAAAGAAAGAGAGGGAGGGAAAGAACAAGGCATAGAAAGAGAGTAAGGATAAATGAATCCCTATTGATTACAATTATGGTGATGATGACGATTCATTAAAAGAGGTTGAGTTGGATATGCGTACCCGTGAGCGTAAACGCANAATAACACTACTTGATGTAATTCANAGAATCAAAATAGGTTGCTTTTTTTAATTATTCATCTAAAACGATAGGATCATATTGAATTAATGAAGAAAGC ] [+] EMBL CD200953 [ aGAAACAACAAGGCTTAAAAAGAGAGTGAGGATAAATGAATCCCTATTGATTACAATTATGGTGATGATGACGATTCATTAAAAGAGGTTGAGTTGGATATGCGTACCCGTGAGCGTAAACGCAAAATAACACTACTTGATGTAATTCAAAGAATCAAAATAGGTGGCTTTTTTTAATTATTCATCTAAAACGATAGGATCATATTGAATTAATGAAGAAAGCAAATGAAGCAAAAAGTAACCAACTGTGAAACTAATGTGGTGATTATAACAAACTAAGGACAGTAACAAAGAAAATACAAGCACCGTGTATGTATCTGTGTGTGTTCACAATT ] [+] EMBL CD071565 [ GGCATAGAAAGAGAGTAAGGATAAATGAATCCCTATTGATTACAATTATGGTGATGATGACGATTCATTAAAAGAGGTTGAGTTGGATATGCGTACCCGTGAGCGTAAACGCAAAATAACACTACTTGATGTAATTCAAAGAATCAAAATAGGTTGCTTTTTTTAATTATTCATCTAAAACGACAGGATCATATTGAATTAATGAAGAAAGCAAATGAAGCAAAAAGTAACCAACTGTGAAACTAATGTGGTGATTATAACAAACTAAGGACAGTAACAAAGAAAATACAAGCACCGTGTATGTATCTGTGTGTGTTCATAATTTGGCCCCGTCTAACTTTCTTATTTTCATACATAAAATCTATATCCAACTTTATATGTAATAGGGTTTATACTGCGTGTGAATAGAAGTTATACACACATATACACGATGCATTACACTAATATATAGGCCAGAAATTGTT ] [-] EMBL BG930468 [ TTCAAAGAATCAAAATAGGTTGCTTTTTTTAATTATTCATCTAAACCGATAGGATCATATTGAATTAATGAAGAAAGCAAATGAAGCAAAAAGTAACCANCTGTGAAACTAATGTGGTGATTATAACAAACTAAGGACAGTAACAAAGAAAATACAAGCNCCGTGTATGTATCTGTGTGTGTTCATAATTTGGCCCCGTCTAACTTTCTTATTTTCATACATAAAATCTATATCCAACTTTATATGTAATAGGGTTTATACTGCGTGTGAATAGAAGTTATACACACATATACACGATGCATTACACTAATATATAGGCCAGAAATTGTTGAAGTATTTCAAGGAAGCACTAATCATAACACATTTTAAAGGGATC ] [-] EMBL CD167547 [ AATTTGCCCCCGTCTAACTTTCTGATTTTCATACATAAAATCTATATCCAACTTTATATGTAATAGGGTTTATACTGCGTGTGAATAGAAGTTATACACACATATACACGATGCATTACACTAATATATAGGCCAGAAATTGTTGAAGTATTTCAAGGAAGCACTAATCATAACACATTTTAAAGGGATCCTCGCAAGAATAAATACCAGATTGAGATTGATGTAAATATAAATGAATGTTTTTTTTTAAAAAAAAATTGTTCTCCAACAATCAAAGTACATAAGAAGAGAGAGTAAGGCATTCAAAGAATTTCATGCTGCTAAGACTAAGAAAGTAT TTGCTTGGAATAAACAAAACCAAATAT AGGGA ] [-] EMBL CD167543 [ AACTTTCTGATTGTCATACATAAAATCTATATCCAACTTTATATGTAATAGGGTTTATACTGCGTGTGAATAGAAGTTATACACACATATACACGATGCATTACACTAATATATAGGCCAGAAATTGTTGAAGTATTTCAAGGAAGCACTAATCATAACACATTTTAAAGGGATCCTCGCAAGAATAAATACCAGATTGAGATTGATGTAAATATAAATGAATGTTTTTTTTTAAAAAAAAATTGTTCTCCAACAATAAAAGTACATAAGAAGAGAGAGTAAGGCATTCAAAGAATTTCATGCTGCTAAGACTAAGAAAGTATCTTGCTTGGAATAAACCAAACCCAA ATAAGGGATTAAACTAGACCAGCAATCTAGGCACC ACCCATATCGATAATGCTCATATTATCATCATTAATATCAATGTAGTAAACTGGATACTTCTTTATGAATGTGACATAGATATTCTGTGTAT ] [+] EMBL CD167217 [ atCAT AAATCTATATCCAACTTTATATGNTATAGGGTTTATACTGCGTGTGAATAGAAGTTATACACACATAT CACGATGCATTGCACTAATATATAGGCCAGAAATTGTTGAAGTATTTCAAGGAAGCACTAATCATAACACATTTTAAAGGGATCCTCGCAAGAATAAATACCAGATTGAGATTGATGTAAATATAAATGAATGTTTTTTTTA AAAAAAAATTGTTCTCCAACAATAAAAGTACATAAGAAGAAAGAGTAAGGCATTCAAAGAATTTCATGCTGCTAAGACTAAGAAAGTAT TTGCTTGGAATAAACAAAACCAAA ATAAGGGATTAAACTAGACCAGCAATCTAGGCACCA ] [+] EMBL CD096481 [ TTATACACACATATACACGATGCATTACACTAATATATAGGCCAGAAATTGTTGAAGTATTTCAAGGAAGCACTAATCATAACACATTTTAAAGGGATCCTCGCAAGAATAAATACCAGATTGAGATTGATGTAAATATAAATGAATGTTTTTTTT AAAAAAATTGTTCTCCAACAATAAAAGTACATAAGAAGAGAGAGTAAGGCATTCAAAGAATTTCATGCTGCTAAGACTAAGAAAGTAT TTGCTTGGAATAAACAAAACCAAA ATAAGGGATTAAACTAGACCAGCAATCTAGGCACCAACCCATATCGATAATGCTCATATTATCATCATTAATATCAATGTAGTAAACTGGATACTTCTTTATGAATGTGACATAGATATTCTGTGTATGAAATCGAATTACTACTGCATCGATCCTCGACCATGAAACGTCGAAACCATAGTTCACTTTTATCTCCAGGACGTACAACCAATAACCGAGAATAATGCCAACAATTTTTACGAACTTTTCTCAGCAATGTACACAGATTACGTGAAATTTCGTTATCAAAATTACACANATCATAGATTTTTTCTGATTCAna ] [+] EMBL CD096668 [ TTATACACACATATACACGATGCATTACACTAATATATAGGCCAGAAATTGTTGAAGTATTTCAAGGAAGCACTAATCATAACACATTTTAAAGGGATCCTCGCAAGAATAAATACCAGATTGAGATTGATGTAAATATAAATGAATG TTTTTTTT AAAAAAAATTGTTCTCCAACAATAAAAGTACATAAGAAGAGAGAGTAAGGCATTCAAAGAATTTCATGCTGCTAAGACTAAGAAAGTAT TTGCTTGGAATAAACAAAACCAAA ATAAGGGATTAAACTAGACCAGCAATCTAGGCACCAACCCATATCGATAATGCTCATATTATCATCATTAATATCAATGTAATAAACTGGATACTTCTTTATGAATGTGACATAGATATTCTGTGTATGAAATCGAATTACTACTGCATCGATCCTCGACCATGAAACGTCGAAACCATAGTTCACTTTTATCTCCAGGACGTACAACCAATAACCGAGAATAATGCCAACAATTTTTACGAACTTTTCTCAGCAATGTACACAGATTACGTGAAATTTCGTTATCAAAA TACACANATCATAGATTTTTTCTGAT ] [-] EMBL CD146931 [ TAAAGGGATCCTCGCAAGAATAAATACCAGATTGAGATTGATGTAAATATAAATGAATG TTTTTTTT AAAAAAAATTGTTCTCCACCAATAAAAGTACATAAGAAGAGAGAGTAAGGCATTCAAAGAATTTCATGCTGCTAAGACTAAGAAAGTAT TTGCTTGGAATAAACAAAACCAAA ATAAGGGATTAAACTAGACCAGCAATCTAGGCACCAACCCATATCGATAATGCTCATATTATCATCATTAATATCAATGTAGTAAACTGGATACTTCTTTATGAATGTGACATAGATATTCTGTGTATGAAATCGAATTACTACTGCATCGATCCTCGACCATGAAACGTCGAAACCATAGTTCACTTTTATCTCCAGGACGTACAACCAATAACCGAGAATAATGCCAACAATTTTTACGAACTTTTCTCAGCAATGTACACAGATTACGTGAAATTTCGTTATCAAAATTACACAAATCATAGATTTTTTCTGATTCAAAATGTTCCGGATTT ] [-] EMBL CD064299 [ CAAAGAATTTCATGCTGCTAAGACTAAGAAAGTAT TTGCTTTGAATAAACAAAACCA AAGGGATTAAACTAGACCAGCAATCTAGGCACCAACCCACATCGATAATGCTCATATTATCATCATTAATATCAATGTAGTAAACTGGATACTTCTTTATGAATATGACATAGATATTCTGTGTATGAAATTGAATTACTACTGCATCGATCCTCGCCCCAGGATCGTCGCAACCAT ] [-] EMBL CD096321 [ A ATAAGGGATTAAACTAGACCAGCAATCTAGGCACCAACCCATATCGATAATGCTCATATTATCATCATTAATATCAATGTAGTAAACTGGATACTTCTTTATGAATGTGACATAGATATTCTGTGTATGAAATCGAATTACTACTGCATCGATCCTCGACCATGAAACGTCGAAACCATAGTTCACTTTTATCTCCAGGACGTACAACCAATAACCGAGAATAATGCCAACAATTTTTACGAACTTTTCTCAGCAATGTACACAGATTACGTGAAATTTCGTTATCAAAATTACACAAATCATAGATTTTTTCTGATTCAAAATGTTCCGGATTTTGAACATTGAACACTGCTTGAATCCATTCCGATGAAATATTTGGACCGATCCACATGATAAGATAAATTCCATTATCTAATAAATAAGCTGCGTCCATTTGTAAACGATCATATGAACAGCGTATAGCAGCTGGAGGATAAGGTATATCACCTTCGAAATTCAGTGAAAGATCATGAATAGGATATAAGTGAGGATAAATATAACAATTGGATTGTTTAACGTCC ] [-] EMBL CD096355 [ ATAAGGGATTAAACTAGACCAGCAATCTAGGCACCAACCCATATCGATAATGCTCATATTATCATCATTAATATCAATGTAGTAAACTGGATACTTCTTTATGAATGTGACATAGATATTCTGTGTATGAAATCGAATTACTACTGCATCGATCCTCGACCATGAAACGTCGAAACCATAGTTCACTTTTATCTCCAGGACGTACAACCAATAACCGAGAATAATGCCAACAATTTTTACGAACTTTTCTCAGCAATGTACACAGATTACGTGAAATTTCGTTATCAAAATTACACAAATCATAGATTTTTTCTGATTCAAAATGTTCCGGATTTTGAACATTGAACACTGCTTGAATCCATTCCGATGAAATATTTGGACCGATCCACATGATAAGATAAATTCCATTATCCAATAAATAAGCTGCGTCCATTTGTAAACGATCATATGAACAGCGTATAGCAGCTGGAGGATAAGGTATATCACCTTCGAAATTCAGTGAAAGATCATGAATAGGATATAAGTGAGGATAAGTATAACAATTGGATTGTTTAACGTCC ] [+] EMBL CD146731 [ ACCAACCCACATCGATAATGCTCATATTATCATCATTAATATCAATGTAGTAAACTGGATACTTCTTTATGAATATGACATAGATATTCTGTGTATGAAATTGAATTACTACTGCATCGATCCTCGACCATGAAACGTCGAAACCATAGTTCACTTTTATCTCCAGGACGTACAACCAATAACCGAGAATAATGCCAACGATTTTTACGAACTTTTCTCAGCAATGTACACAGATTACGTGAAATTTCGTTATCAAAATTACACAAGTCATAGATTTTTTCTGATTCAAAATGTTCCGGATTTTGAACATTGAACACTGCTTGAATCCATTCTGATGAAATATTTGGACCGATCCACATGATAAGATAAATTCCATTATCCAATAAATAAGCTGCGTCCATTTGTAAACGATCATATGAACAGCGTATAGCAGCTGGAGGATAAGGTATATCACCTTCGAAATTCAGTGAAAGATCATGAATAGGg ] [+] EMBL CD128224 [ cacgGAAC TTTCTCAGC ATGTAC CAGATTACGTGAAATTTCGTTATCAAAA TACACAAGTCATAGATTTTTTCTGATTCAAAATGTTCCGGATTTTGAACATTGAACACTGCTTGAATCCATTCCGATGAAATATTTGGACCGATCCACATGATAAGATAAATTCCATTATCCAATAAATAAGCTGCGTCCATTTGTAAACGATCATATGAACAGCGTATAGCAGCTGGAGGATAAGGTATATCACCTTCGAAATTCAGTGAAAGATCATGAATAGGATATAAGTGAGGATAAATATAGCAATTGGATTGTTTAACGTCCATTTGGTTGACCAAAAACATTTGCCAACAACGATCATCAATTGTAATACCATCAGCAGGACTAAAGGCTTCAGTTTTCATAAGACATTGTATGTACAAAGGAAATACTTTCATATTTCGTGGTAATACTAATTCACTAGGATTCGAATTTACATCATTCGGACCACAAGCACAATGACGACGA ] [+] EMBL CD197831 [ GTATAGCAGCTGGAGGATAAGGTATATCACCTTCGAAATTCAGTGAAAGATCATGAATAGGATATAAGTGAGGATAAATATAACAATTGGATTGTTTAACGTCCATTTGGTTGACCAAAAACATTTGCCAACAACGATCATCAATTGTAATACCATCAGCAGGACTAAAGGCTTCAGTTTTCATAAGACATTGTATGTACAAGGGAAATACTTTCATATTTTGTGGTAATACTAATTCACTAGGATTCGAATTTACATCATTCGGACCGCAAGCACAATGACGACGATAAGCAGCCAAGG TGTTAGCAGCTCTTGTTGTTAAATCATCCATTACTTGTGAATGTGTACGGTTGAGTAGAGAACGCATTGAATATTTACTCAACCAATTCATATGTGCGTCTAATTCGACAA ] [+] EMBL CD128424 [ GGT ATACTAATTCACTAGGATTCGAATTTACATCATTCGGACCACAAGCACAATGACGACGAGTAGCAGCCAAGGATGTTAGCAGCTCTTG TGTTAAATCATCCATTACTTGTGAATGTGTACGGTTGAGTAGAGAACGCATTGTATATTTACTCAACCAATTCATATGTGCATCTAATTCGACAAGACGAAATATATCAGGTATCATACTTGTCACTGGAATTGACAGATTATGAATACGTAGCCTTCGCTGTCCAGATACTGAGGTATAAAGACATGCAACTTGAATGAATACGAGTTCACCCTCTTGAAGTTTATCATCATGACGTAATTCCGCTGTGATCGCCATATCTGAACTAACACTAGCCAATTCAACATCAGTTGTATTAGGTAGGTAACAATTACCA ] [-] EMBL CD128383 [ TTACATCATTCGGACCACAAGCACAATGACGACGATAAGCAGCCAAGG TGTTAGCAGCTCTTGTTGTTAAATCATCCATTACTTGTGAATGTGTACGGTTGAGTAGAGAACGCATTGAATATTTACTCAACCAATTCATATGTGCATCTAATTCGACAAGACGAAATATATCAGGTATCATACTTGTCACTGGAATTGACAGATTA ] [+] EMBL CD161408 [ CCATTACTTGTGAATGTGTACGGTTGAGTAGAGAACGCATTGAATATTTACTCAACCAATTCATATGTGCGTCTAATTCGACAAGACGAAATATATCAGGTATCATACTTGTCACTGGAATTGACAGATTATGAATACGTAGCCTTCGTTGTCCAGATACTGAAGTACAAAGACATGCAACTTGAATGAATACGAGCTCACCTTCTTGAAGTTTATCATCATGACGTAATTCCGCTGTGATCGCCATATCTGAACTAACACTAGCCAATTCAACATCAGTTGTATTAGGTAGGTAACAATTACCAAAGAATTCAACAGGTCTAATACCAGTGCTTGTTCGAACACGCATAACAGCGTTGAAAGCTTGTAGGTTGGTTAAAGTACGTTGGAGATCGGCCAAAAACTGATGACCTTGTAGGTCAGCCTGGAAACAGTTATATTTGAATAAACGACCAGATGTTATTCTGGGCACTTCGGCTAAAGAAGCAATATCAACAAATGAATTGGGAAAAAGAAAAAGATCT] [-] EMBL CD114647 [ AAGACGAAATATATCAGGTATCATACTTGTCACTGGAATTGACAGATTATGAATACGTAGCCTTCGCTGTCCAGATACTGAGGTATAAAGACATGCAACTTGAATGAATACGAGTTCACCTTCTTGAAGTTTATCATCATGACGTAATTCCGCTGTGATCGTCATATCTGAACTAACACTAGCCAATTCAACATCAGTTGTATTAGGTAGGTAACAATTACCAAAGAATTCAACAGGTCTAATACCAGTACTTGTTCGAACACGCATAACAGCGTTGAAAGCTTGTAGGTTAGTCAAAGTACGTTGGAGATCGGCCAAAAATTGATGACCTTGTAGGTCAGCCTGGAAACAGTTATATTTGAATAAACGACCAGATGTTATTCTGGGCACTTCAGCTTAAGAAGCAATATCAACAAATGAATTGGGAAAAAG ] consensusID : consensus_10943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 544 fasta sequence [ATTACATTAGTTTCAGGATACAGGGTAAACAGGGGGGAAAAATAAGATGGTGGATTCTTCACGATAGTGGTAAAAAGAAAACCAACAAAATTCACTAATATTCAAACTCACAATAATAAGTAATATTATTATCATTTTGGTTTATTTTAAGCAATACAAAACTTATAGCTGTTGTCCACAGTGAATAGGAGACAAAAAGAAAGAGAGGGAGGGAAAGAATAAGGCATAGAAAGAGAGTAAGGATAAATGAATCCCTATTGATTACAGTTATGGTGATGACAATAATGATGACGATTCATTAAAAGAGGTTGAGTTGGATATGCGTACCCGTGAGCGTAAACGCAAAATAACACTACTTGATGTAATTCAAAGAATCAAAATAGGTTGCTTTTTTTTAATTATTCATCTAAAACGATAGGATCATATTGAATTAATGAAGAAAGCAAATGAAGCAAAAAGTAACCAACTGTGAAACCAATGTGGTGATTATAACAAATTAAGGACAGTAACAAAGAAAATACAAGCACCGTGTATGTATGCGTGT] [-] EMBL AI976132 [ATTACATTAGTTTCAGGATACAGGGTAAACAGGGGGGAAAAATAAGATGGTGGATTCTTCACGATAGTGGTAAAAAGAAAACCAACAAAATTCACTAATATTCAAACTCACAATAATAAGTAATATTATTATCATTTTGGTTTATTTTAAGCAATACAAAACTTATAGCTGTTGTCCACAGTGAATAGGAGACAAAAAGAAAGAGAGGGAGGGAAAGAATAAGGCATAGAAAGAGAGTAAGGATAAATGAATCCCTATTGATTACAGTTATGGTGATGACAATAATGATGACGATTCATTAAAAGAGGTTGAGTTGGATATGCGTACCCGTGAGCGTAAACGCAAAATAACACTACTTGATGTAATTCAAAGAATCAAAATAGGTTGCTTTTTTTTAATTATTCATCTAAAACGATAGGATCATATTGAATTAATGAAGAAAGCAAATGAAGCAAAAAGTAACCAACTGTGAAACCAATGTGGTGATTATAACAAATTAAGGACAGTAACAAAGAAAATACAAGCACCGTGTATGTATGCGTGT] [-] EMBL AI976284 [ GATTCTTCACGATAGTGGTAAAAAGAAAACCAACAAAATTCACTAATATTCAAACTCACAATAATAAGTAATATTATTATCATTTTGGTTTATTTTAAGCAATACAAAACTTATAGCTGTTGTCCACAGTGAATAGGAGACAAAAAGAAAGAGAGGGAGGGAAAGAATAAGGCATAGAAAGAGAGTAAGGATAAATGAATCCCTATTGATTACAGTTATGGTGATGACAATAATGATGACGATTCATTAAAAGAGGTTGAGTTGGATATGCGTACCCGTGAGCGTAAACGCAAAATAACACTACTTGATGTAATTCAAAGAATCAAAATAGGTTGCTTTTTTTTAATTATTCATCTAAAACGATAGGATCATATTGAATTAATGAAGAAAGCAAATGAAGCAAAAAGTAACCAACTGTGAAACCAATGTGGTGATTATAACAAATTAAGGACAGTAACAAAGAAAATACAAGCACCGTGTATGTATGCGTGT] [-] EMBL AI975119 [ ATAATAAGTAATATTATTATCATTTTGGTTTATTTTAAGCAATACAAAACTTATAGCTGTTGTCCACAGTGAATAGGAGACAAAAAGAAAGAGAGGGAGGGAAAGAATAAGGCATAGAAAGAGAGTAAGGATAAATGAATCCCTATTGATTACAGTTATGGTGATGACAATAATGATGACGATTCATTAAAAGAGGTTGAGTTGGATATGCGTACCCGTGAGCGTAAACGCAAAATAACACTACTTGATGTAATTCAAAGAATCAAAATAGGTTGCTTTTTTTTAATTATTCATCTAAAACGATAGGATCATATTGAATTAATGAAGAAAGCAAATGAAGCAAAAAGTAACCAACTGTGAAACCAATGTGGTGATTATAACAAATTAAGGACAGTAACAAAGAAAATACAAGCACCGTGTATGTATGCGTGT] [-] EMBL AA756920 [ ATAAGTAATATTATTATCATTTTGGTTTATTTTAAGCAATACAAAACTTATAGCTGAAGTCCACAGAGAATANGAGACAAAAAGAAAGAGAGGGAGGGAAAGAATAAGGCATAGAAAGAGAGTAAGGATAAATGAATCCCTATTGATTACAGTTATGGTGATGACAATAATGATGACGATTCATTAAAAGAGGTTGAGTTGGATATGCGATCCCGTGA CGTAAACGCAAAATAACACTACTTGATGTAATTCAAAGAATCAAAATANGTTGCTTTTTTTTAATT ] [-] EMBL AI976718 [ AAACTTATAGCTGTTGTCCACAGTGAATAGGAGACAAAAAGAAAGAGAGGGAGGGAAAGAATAAGGCATAGAAAGAGAGTAAGGATAAATGAATCCCTATTGATTACAGTTATGGTGATGACAATAATGATGACGATTCATTAAAAGAGGTTGAGTTGGATATGCGTACCCGTGAGCGTAAACGCAAAATAACACTACTTGATGTAATTCAAAGAATCAAAATAGGTTGCTTTTTTTTAATTATTCATCTAAAACGATAGGATCATATTGAATTAATGAAGAAAGCAAATGAAGCAAAAAGTAACCAACTGTGAAACCAATGTGGTGATTATAACAAATTAAGGACAGTAACAAAGAAAATACAAGCACCGTGTATGTATGCGTGT] consensusID : consensus_10943#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [TACATAAAATCTATATCCAACTTTATATGTAATAGGGTTTATACTGCGTGTGAATAGAAGTTATACACACATATACACGATGCATTGCACTAATATATAGGCCAGAAATTGTTGAGGTATTTCAAGGAAGCACTAATCATAACACATTTTAAAGGGATCCTCGCAAGAATAAATACCAGATTGAGATTGATGTAAATATAAATGAATGTTTTTTTTAAAAAAAATTGTTCTCCAACAATAAAAGTACACAAGAAGAGAGAGTAAGGCATTCAATAGAATTTCATGCTGCTAAGACTAAGAAAGTATTTGCTTGGAATAAACAAAACCAAAATAAGGGATTAAACTAGACCACATCTAGCACCAACCCAAGTTCCGTGAGC] [-] EMBL CD167334 [TACATAAAATCTATATCCAACTTTATATGTAATAGGGTTTATACTGCGTGTGAATAGAAGTTATACACACATATACACGATGCATTGCACTAATATATAGGCCAGAAATTGTTGAGGTATTTCAAGGAAGCACTAATCATAACACATTTTAAAGGGATCCTCGCAAGAATAAATACCAGATTGAGATTGATGTAAATATAAATGAATGTTTTTTTTAAAAAAAATTGTTCTCCAACAATAAAAGTACACAAGAAGAGAGAGTAAGGCATTCAATAGAATTTCATGCTGCTAAGACTAAGAAAGTATTTGCTTGGAATAAACAAAACCAAAATAAGGGATTAAACTAGACCACATCTAGCACCAACCCAAGTTCCGTGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10943#0 CCAACTAGGGCAAATCAGGAAATTATTATCACAAAATAATTACAACCAACAACAAAAGTA 60 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 GAACAAACCAGTACACTATTCTCAATGTATTTAATTAATAAGCGAAACAAAGCAAAACAA 120 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 AACAAAACCAGAATACAACAACAATTTAAAGTATAAATTACATTAGTTCCAGGATACAGG 180 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 GTAAACAAGGGGGGGAAATAAGATGATGGATTCTTCACGGTAGTGGTAAAAAGAAAACCA 240 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 ACAACATTCACTACTATTCAAACTCACAATAATAAGTAATATTCTTACCATTTTGACCTA 300 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 TTTTAAGCAACACAGTGAACAGAAGACAAAAAGAAAGAGAGGGAGGGAAAGAACAAGGCA 360 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 TAGAAAGAGAGTAAGGATAAATGAATCCCTATTGATTACAATTATGGTGATGATGACGAT 420 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 TCATTAAAAGAGGTTGAGTTGGATATGCGTACCCGTGAGCGTAAACGCAAAATAACACTA 480 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 CTTGATGTAATTCAAAGAATCAAAATAGGTTGCTTTTTTTAATTATTCATCTAAAACGAT 540 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 AGGATCATATTGAATTAATGAAGAAAGCAAATGAAGCAAAAAGTAACCAACTGTGAAACT 600 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 AATGTGGTGATTATAACAAACTAAGGACAGTAACAAAGAAAATACAAGCACCGTGTATGT 660 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 -----------------ATTACATTAGTTTCAGGATACAGGGTAAACAGGGGGGAAAAAT 43 consensus_10943#0 ATCTGTGTGTGTTCATAATTTGGCCCCGTCTAACTTTCTTATTTTCATACA-TAAAATCT 719 consensus_10943#2 -----------------------------------------------TACA-TAAAATCT 12 consensus_10943#1 AAGATGGTGGATTCTTCACGATAGTGGTAAAAAGAAAACCAACAAAATTCACTAATATTC 103 * ** *** ** consensus_10943#0 ATATCCAACTTTATATGTAATAGGGTTTATACTGCGTGTGAATAGAAGTTATACACA-CA 778 consensus_10943#2 ATATCCAACTTTATATGTAATAGGGTTTATACTGCGTGTGAATAGAAGTTATACACA-CA 71 consensus_10943#1 AAACTCACAATAATAAGTAATATTATTATCATTTTGGTTTATTTTAAGCAATACAAAACT 163 * * ** * *** ****** ** * * * * * * *** ***** * * consensus_10943#0 TATACACGATGCATTACACTAATATATAGGCCAGAAATTGTTGAAGTATTTCAAGGA--- 835 consensus_10943#2 TATACACGATGCATTGCACTAATATATAGGCCAGAAATTGTTGAGGTATTTCAAGGA--- 128 consensus_10943#1 TATAGCTGTTGT-CCACAGTGAATAGGAGACAAAAAGAAAGAGAGGGAGGGAAAGAATAA 222 **** * ** ** * * ** * * ** ** * * *** * consensus_10943#0 AGCACTAATCATAACACATTTTAAAGGGATCCTCGC-AAGAATAAATACCAGATTGAGAT 894 consensus_10943#2 AGCACTAATCATAACACATTTTAAAGGGATCCTCGC-AAGAATAAATACCAGATTGAGAT 187 consensus_10943#1 GGCATAGAAAGAGAGTAAGGATAAATGAATCCCTATTGATTACAGTTATGGTGATGACAA 282 *** * * * **** * **** * * * ** *** * consensus_10943#0 TGATG-TAAATATAAATGAATGTTTTTTTTTAAAAAAAATTGTTCTCCAACAATAAAAGT 953 consensus_10943#2 TGATG-TAAATATAAATGAATGTTTTTTTT-AAAAAAAATTGTTCTCCAACAATAAAAGT 245 consensus_10943#1 TAATGATGACGATTCATTAAAAGAGGTTGA-GTTGGATATGCGTACCCGTGAGCGTAAAC 341 * *** * * ** ** ** ** * ** * ** * ** consensus_10943#0 ACATAAGAAGAGAGAGTAAGGCATTCAA-AGAATTTCATGCTGCTAAGACTAAGAAAGTA 1012 consensus_10943#2 ACACAAGAAGAGAGAGTAAGGCATTCAATAGAATTTCATGCTGCTAAGACTAAGAAAGTA 305 consensus_10943#1 GCAAAATAACACTACTTGATGTAATTCAAAGAATCAAAATAGGTTGCTTTTTTTTAATTA 401 ** ** ** * * * * * * * ***** * * * * ** ** consensus_10943#0 TTTGCTTGGAATAAACAAAACCA----AAATAAGGGATTAAACTAGACCAGCAATCTAGG 1068 consensus_10943#2 TTTGCTTGGAATAAACAAAACCA----AAATAAGGGATTAAACTAGACCAC--ATCTAG- 358 consensus_10943#1 TTCATCTAAAACGA-TAGGATCATATTGAATTAATGAAGAAAGCAAATGAAGCAAAAAGT 460 ** * ** * * * ** *** * ** *** * * * * ** consensus_10943#0 CACCAACC-CATATCGATAATGCTCATATTATCATCATTAATATCAATGTAGTAAACTGG 1127 consensus_10943#2 CACCAACC-CAAGTTCCGTGAGC------------------------------------- 380 consensus_10943#1 AACCAACTGTGAAACCAATGTGGTGATTATAACAAATTAAGGACAGTAACAAAGAAAATA 520 ****** * consensus_10943#0 ATACTTCTTTATGAATGTGACATAGATATTCTGTGTATGAAATCGAATTACTACTGCATC 1187 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 CAAGCACCGTGTATGTATGCGTGT------------------------------------ 544 consensus_10943#0 GATCCTCGACCATGAAACGTCGAAACCATAGTTCACTTTTATCTCCAGGACGTACAACCA 1247 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 ATAACCGAGAATAATGCCAACAATTTTTACGAACTTTTCTCAGCAATGTACACAGATTAC 1307 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 GTGAAATTTCGTTATCAAAATTACACAAATCATAGATTTTTTCTGATTCAAAATGTTCCG 1367 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 GATTTTGAACATTGAACACTGCTTGAATCCATTCCGATGAAATATTTGGACCGATCCACA 1427 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 TGATAAGATAAATTCCATTATCCAATAAATAAGCTGCGTCCATTTGTAAACGATCATATG 1487 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 AACAGCGTATAGCAGCTGGAGGATAAGGTATATCACCTTCGAAATTCAGTGAAAGATCAT 1547 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 GAATAGGATATAAGTGAGGATAAATATAACAATTGGATTGTTTAACGTCCATTTGGTTGA 1607 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 CCAAAAACATTTGCCAACAACGATCATCAATTGTAATACCATCAGCAGGACTAAAGGCTT 1667 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 CAGTTTTCATAAGACATTGTATGTACAAAGGAAATACTTTCATATTTCGTGGTAATACTA 1727 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 ATTCACTAGGATTCGAATTTACATCATTCGGACCACAAGCACAATGACGACGATAAGCAG 1787 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 CCAAGGTGTTAGCAGCTCTTGTTGTTAAATCATCCATTACTTGTGAATGTGTACGGTTGA 1847 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 GTAGAGAACGCATTGAATATTTACTCAACCAATTCATATGTGCGTCTAATTCGACAAGAC 1907 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 GAAATATATCAGGTATCATACTTGTCACTGGAATTGACAGATTATGAATACGTAGCCTTC 1967 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 GCTGTCCAGATACTGAGGTATAAAGACATGCAACTTGAATGAATACGAGTTCACCTTCTT 2027 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 GAAGTTTATCATCATGACGTAATTCCGCTGTGATCGCCATATCTGAACTAACACTAGCCA 2087 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 ATTCAACATCAGTTGTATTAGGTAGGTAACAATTACCAAAGAATTCAACAGGTCTAATAC 2147 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 CAGTGCTTGTTCGAACACGCATAACAGCGTTGAAAGCTTGTAGGTTGGTTAAAGTACGTT 2207 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 GGAGATCGGCCAAAAACTGATGACCTTGTAGGTCAGCCTGGAAACAGTTATATTTGAATA 2267 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 AACGACCAGATGTTATTCTGGGCACTTCGGCTAAAGAAGCAATATCAACAAATGAATTGG 2327 consensus_10943#2 ------------------------------------------------------------ consensus_10943#1 ------------------------------------------------------------ consensus_10943#0 GAAAAAGAAAAAGATCT 2344 consensus_10943#2 ----------------- consensus_10943#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||