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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 474 fasta sequence
[ACATTGCTTTCATCTCAAAGTTTCCGTAAAAAGAACAAAATTTATACCCTATAGTTGCGTGTCTGAGTCATATTCCTAAAAGACTGATCCACATTTTTAACAAATATAGTGTTTACCAATCATTTCACTCAAAGTTTGGTATTTGTTGGTGAAACTGATAAAGACACGTTGATGACTTGTAGTTAAATTTATGTGGTAACACTACACTGTTTCACTGTTGAGTGGTGTTTTTTTAGCTGGCTGACTGCAATAAAAAGTAAATTGTTTACGAAATTCCTGGTTTGTTACAGTGAATGAGATTAGATAGTATTCATAATTTTCAAATATATCGTTATCATAAGAATTTTACCGCTTTCTTAATAGGTACTTTTATCATCCAGTCCCTGACGTAGAAACCATCGAAGAAGCTGAAGCAATTTTGGAAACCAAAGATGCCGCGAAAATTATGGCCTTTATTGGATGGGGCAAAGGTTA]
[+] EMBL CD085139 [ACATTGCTTTCATCTCAAAGTTTCCGTAAAAAGAACAAAATTTATACCCTATAGTTGCGTGTCTGAGTCATATTCCTAAAAGACTGATCCACATTTTTAACAAATATAGTGTTTACCAATCATTTCACTCAAAGTTTGGTATTTGTTGGTGAAACTGATAAAGACACGTTGATGACTTGTAGTTAAATTTATGTGGTAACACTACACTGTTTCACTGTTGAGTGGTGTTTTTTTAGCTGGCTGACTGCAATAAAAAGTAAATTGTTTACGAAATTCCTGGTTTGTTACAGTGAATGAGATTAGATAGTATTCATAATTTTCAAATATATCGTTATCATAAGAATTTTACCGCTTTCTTAATAGGTACTTTTATCATCCAGTCCCTGACGTAGAAACCATCGAAGAAGCTGAAGCAATTTTGGAAACCAAAGATGCCGCGAAAATTATGGCCTTTATTGGATGGGGCAAAGGTTA]
[+] EMBL CD085167 [ACATTGCTTTCATCTCAAAGTTTCCGTAAAAAGAACAAAATTTATACCCTATAGTTGCGTGTCTGAGTCATATTCCTAAAAGACTGATCCACATTTTTAACAAATATAGTGTTTACCAATCATTTCACTCAAAGTTTGGTATTTGTTGGTGAAACTGATAAAGACACGTTGATGACTTGTAGTTAAATTTATGTGGTAACACTACACTGTTTCCCTGTTGAGTGGTGTTTTTTTAGCTGGCTGACTGCAATAAAAAGTAAATTGTTTACGAAATTCCTGGTTTGTTACAGTGAATGAGATTAGATAGTATTCATAATTTTCAAATATATCGTTATCATAAGAATTTTACCGCTTTCTTAATAGGCACTTTTATCATCCAGTCCCTGACGTAGAAACCATCGAAGAAGCTGAAGCAATTTTGGAAACCAAAGATGCCGCGAAAATTATGG ]
[+] EMBL CD085151 [ACATTGCTTTCATCTCAAAGTTTCCGTAAAAAGAACAAAATTTATACCCTATAGTTGCGTGTCTGAGTCATATTCCTAAAAGACTGATCCACATTTTTAACAAATATAGTGTTTACCAATCATTTCACTCAAAGTTTGGTATTTGTTGGTGAAACTGATAAAGACACGTTGATGACTTGTAGTTAAATTTATGTGGTAACACTACACTGTTTCACTGTTGAGTGGTGTTTTTTTAGCTGGCTGACTGCAATAAAAAGTAAATTGTTTACGAAATTCCTGGTTTGTTACAGTGAATGAGATTAGATAGTATTCATAATTTTCAAATATATCGTTATCATAAGAATTTTACCGCTTTCTTAATAGGTACTTTTATCATCCAGTCCCTGACGTAGAAACCATCGAAGAAGCTGAAGCAATTTTGGAAACCAAAGATGCCGCGAAAATTATG ]
[-] EMBL CD085136 [ CATTGCTTTCATCTCAAAGTTTCCGTAAAAAGAACAAAATTTATACCCTATAGTTGCGTGTCTGAGTCATATTCCTAAAAGACTGATCCACATTTTTAACAAATATAGTGTTTACCAATCATTTCACTCAAAGTTTGGTATTTGTTGGTGAAACTGATAAAGACACGTTGATGACTTGTAGTTAAATTTATGTGGTAACACTACACTGTTTCACTGTTGAGTGGTGTTTTTTTAGCTGGCTGACTGCAATAAAAAGTAAATTGTTTACGGAATTCCTGGTTTGTTACAGTGAATGAGATTAGATAGTATTCATAATTTTCAAATATATCGTTATCATAAGAATTTTACCGCTTTCTTAATAGGTACTTTTATCATCCAGTCCCTGACGTAGAAACCATCGAAGAAGCTGAAGCAATTTTGGAAACCAAAGATGCCGCGAAAATTATGG ]
[-] EMBL CD085228 [ CATTGCTTTCATCTCAAAGTTTCCGTAAAAAGAACAAAATTTATACCCTATAGTTGCGTGTCTGAGTCATATTCCTAAAAGACTGATCCACATTTTTAACAAATATAGTGTTTACCAATCATTTCACTCAAAGTTTGGTATTTGTTGGTGAAACTGATAAAGACACGTTGATGACTTGTAGTTAAATTTA ]
consensusID : consensus_10944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 421 fasta sequence
[TAGAAACCATCGAAGAAG-CTGAAGCAATTTTGGAAA-CC-AAAGATG-CCGCG-A-AAATTATGGCCTT-TAAT-GGATGGGTGATGAATGATGATCCTTTG-AAAAACTTTGCAGA-ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAGAATTATTCACTGGAGGCGAAATATGTGATNACATTTTCATNCATAAATAGGTCTTAGCTCTTAATAC]
[+] EMBL CD070749 [TAGAAACCATCGAAGAAG CTGAAGCAATTTTGGAAA CC AAAGATG CCGCG A AAATTATGGCCTT TAAT GGATGGGTGATGAATGATGATCCTTTG AAAAACTTTGCAGA ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGC AAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTNCATGTAGCGC ]
[+] EMBL CD070865 [TAGAAACCATCGAAGAAGTTTCCCCCAATTTTGGAAA CC AAAGATG CCGCG A AAATTATGGCCTT T AT GGATGGATGATGAATGATGATCCTTTG AAAAACTTCGCAGA ACCTAGCTCATTTGTATACT ]
[-] EMBL CD070824 [ AGAACCCATCGAAGAAG CTGAAGCAATTTTGGAAA CC AAAGATG CCGCG A AAATTATGGCCTN TAAT GGATGGGTGATGAATGATGATCCTTTG AAAAACTTTGCAGA ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCACAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070777 [ AGAANCCATCGAAGAAG CTGAAGCAATTTTGGAAA CC AAAGATG CCGCG A AAATTAT GCCTTNNAAT GGATGGGTGATGAATGATGATCCTNTG AAAAACTTTGCAGA ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACGGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070766 [ AGAAACCATCGAAGAAG CTGAAGCAATTTTGGAAA CCAAAAGATG CCGCG A AAATTATGGCCTN TAAT GGATGGGTGATGAATGATGATCC TTG AAAAACTTTGCAGA ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTNTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGAACTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070733 [ AGAACCAATCGAAGAAG CTGGAGCAATTTTGGAAATCC AAAGATG CCGCG A AAATTATGGCCTT TAAT GGATGGGTGATGAATGATGATCC TTG AAAGACTTTGCAGA CCCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070923 [ AGAACCNATCGAAGAAG CTGAAGC ATTTTNGGAA CC AAAGATG CCGCG A AAATTATGGCCTN TAAT GGATGGGTGATGAATGATGATCCTTTGAAAAAACTTTGCAGA NCCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCACGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070809 [ AGAANCCATCGAGAAAG CTGAAGC ATTTTGGAAT CC ACAGATG CCGCG A AGATTATGGCCTT CAAT GGATGGGTGATGAATGATGATCCTTTG AAAAACTTTGCAGA ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070887 [ AGAAACCATCGAGAAAG CTGAAGCAA TTTGGAAA CC AAAGATG CCGCG A AAATTATGGCCTN TAAT GGATGGGTGATGAATGATGATCCTTTG AAAAACTTTGCAGA ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070793 [ gAACCATCGAAGAAG CTGAAGCAATTTT GAAA CC AAAGATG CGCGAA AAATTAT GCC T TAATGGGATGGGTGATGAATGATGATCC TTG AAAAACTTTGCAGANNCCTAGCTCATTTGTATACTTACGCCGTGAACTTACAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070740 [ gAACCATCGANGAAG CTGAAGC ATTTTNGGAA CC AAAGATG CCGCG A AAATTATGGCCTT TAAT GGATGGNTGATGAATGATGATCC TTG AAAAACTTTGCAGA ACCTAGCTCATTTGTATACTTACGCCGTGAACTCATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070730 [ gAACCATCGAGAAAG CTGAAGC ATTTTGG AA CC AAAGATG CCGCG AAATTAT GCCTT AAAT GGATGGGTGATGAATGATGATCCTTTG AAAAACTTTGCAGA ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070794 [ gAANCATCGAGAAAG CTGAAGC ATTTTGG AA CC AAGATGNNCGCG A AAATTAT GCCCT TAAT GGATGGNTGATGAATGATGATCCTTTG AAAACTTTGCAGA ACCTAGCTCATTTGCATACTTACGCCGTGAACTTATAGTCT GGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGAAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070776 [ agAATCATCGAAGAAG CTGAAGC ATTTTGGAAC GC AAAGATG CCGCG A AAATTATGGCCTC TAAT GGATGGGTGATGAATGATGATCCTTTG AAAAACTTTGCAGA ACCTAGCTCATTAGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTACCCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070928 [ TGGAGA CC ANAGATG CGCG ANAAATTATGGCCTN TAAT GGATGGGTGATGAATGATGATCCTTTG AAAAACTTTGCAGA ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGAGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[+] EMBL CD181425 [ GGAAA CC AAAGATG CCGCG A AAATTATGGCCTT TAAT GGATGGGTGATGAATGATGATCCTTTG AAAAACTTTGCAGA ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGATTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGNTGCAGAATTATTCACTGGAGGCGAAATATGTGATNACATTTTCATNCATAAATAGGTCTTAGCTCTTAATAC]
[+] EMBL CD181531 [ GGAAA CC AAAGATG CCGCG A AAATTATGGCCTT TAAT GGATGGGTGATGAATGATGATCCTTTG AAAAACTTTGCAGA ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGATTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGC ]
[-] EMBL CD072475 [ aAAT GGATGGGTGATGAATGATGATCC TTG AAAAACTTTGCAGA ACCTAGCTCATTNGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAGAATTATTCACTGGGGGCG ]
[-] EMBL CD070788 [ tnnAAT GGATGGGTGATGAATGATGATCCTTTG AAAAACTTTGCAGA CNCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070892 [ GGTGATGAATGATGATCC TTG AAAAACTTTGCAGA ACCTAGCTCATTNGTATACTTACGCCGTGAACTTATAGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTTCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
[-] EMBL CD070862 [ GA ACCTAGCTCATTTGTATACTTACGCCGTGAACTTATAGTCTGGNGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCTTTGGGATAGAATGACTAAATACACGGAATTAACCGCAAAAATATTTCACGCAGTACGATTGGATAATTGTCATAGTACACCTCTCCATGTAGCGCAATACATGATTGATAAGGCTAGAGCTATACGACCTAATTTATATGTGGTTGCAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10944#0 ACATTGCTTTCATCTCAAAGTTTCCGTAAAAAGAACAAAATTTATACCCTATAGTTGCGT 60
consensus_10944#1 -----------------TAGAAACCATCGAAGAAGCTGAAGCAATT--------TTGGAA 35
** ** * ** * * ** ** ***
consensus_10944#0 GTCTGAGTCATATTCCTAAAAGACTGATCCACATTTTTAACAAATATAGTGTTTACCAAT 120
consensus_10944#1 ACCAAAG--ATGCCGCGAAAATTATGGCC------TTTAATGGATG-GGTGATGAATGAT 86
* ** ** * **** ** * ***** ** *** * * **
consensus_10944#0 CATTTCACTCAAAGTTTGGTATTTGTTGGTGAAACTGATAAAGACACGTTGATGACTTGT 180
consensus_10944#1 GATCCTTTGAAAAACTTTGCAGAACCTAGCTCATTTG-TATACTTACGCCGTGAACTTAT 145
** *** ** * * * * * ** ** * *** * **** *
consensus_10944#0 AGT-TAAATTTATGTGGTAACACTACACTGTT-TCACTGTTGAGTGGTGTTTTTTTAGCT 238
consensus_10944#1 AGTCTGGGGGGACTCAGTAAAGCTACGTTATGGTGACAAACCAGCAGACAGCCCATATCT 205
*** * * **** **** * * * ** ** * ** **
consensus_10944#0 GGCTGACTGCAATAAAAAGTAAATTGTTTACGAAATTCCTGGTTTGTTACAGTGAATGAG 298
consensus_10944#1 TTGGGATAGAATGACTAAATACACGGAATT---AACCGCAAAAATATTTCACGCAGTACG 262
** * * * ** ** * * * ** * * ** ** * * *
consensus_10944#0 ATTAGATAGTATTCATAATTTTCAAATATATCGTTATCATAAGAATTTTACCGCTTTCTT 358
consensus_10944#1 ATTGGATAATTGTCATAGT------ACACCTCTTCAT-----GTAGCGCAATACATGATT 311
*** **** * ***** * * * ** * ** * * * * * **
consensus_10944#0 AATAGGTACTTTTATCATCCAGTCCCTGACGTAGAAACCATCGAAGAAGCTGAAGCAATT 418
consensus_10944#1 GATAAG-GCTAGAGCTATACGA--CCTAATTTATATGTGGTTGCAGAA--TTATTCA--- 363
*** * ** ** * *** * ** * * * **** * * **
consensus_10944#0 TTGGAAACCAAAGATGCCGCGAAAATTATGGCCTTTATTGGATGG-GGCAAAGGTTA- 474
consensus_10944#1 CTGGAGGCGAAATATGTGATNACATTTTCATNCATAAATAGGTCTTAGCTCTTAATAC 421
**** * *** *** * * ** * * * * * * ** **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||