These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 24 consensus length = 1797 fasta sequence [ATCGGTTATAATCATAGCTTCGTTAGAGACCGGGTTCAGTGAAAGCTTGGTTGTTTCCCTACAAAAATGTTAATGGCTTTGCTTAATAATTTAATACATAAGCCTGAAGTTCTCTGTCGAAAATCAATTTTCCGTCTTGTGAACATTCCGAACTGTTTATACAGCACTGAACAAGATGATATACCGTTTCATCTCATGGTTGAAGGATTTTATGATAAAGCTTCAGCCCTTGTTGAACAAAATTTGATATCAAAACTCCAATCAAAAGCGCCAGACAATGAAAAGACGAAAATTGTCAAAGGGACCCTCAACATAATTCGGCCACCTACTCACATTTTCGAAGTTAACTTTCCGCACAAAGCTGATGATGGAACATTCAAGATTATTCAAGGCTTTAGAGCTCAACATAGTGTGCACAGGCGACCCACTAAGGGTGGCATTCGGTATAGCATGGACGTGTGCAGAGAAGAAGTTATGGCTCTTGCTGCTCTGATGACGTATAAATGTGCCGTCGTAGATGTTCCATTCGGTGGCGCCAAGGGGGGAATCAAGATAAATCCCAAAGACCACTCTCCAGCAGAATTAGAAAGGATAACCCGTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGTCCCGGAACTGATGTTCCTGCTCCGGATATGGGGACTGGACCTCGGGAGATGAGTTGGATTGCGGATACGTATGCAAACACCGTAGGTCACAACGATATGCACAGTCATGCTTGTGTAACAGGAAAGTCCATCGCTATGGGTGGTATTCACGGTCGCATTTCGGCCACAGGACGCGGGGTTTATCATGGGATAGACAACTTCTTAAATAACCCAAAGTATGCGGATGCTATCGGTTTGTCCCCAGGGCTGAAGGATAAAACTTTCATTGTTCAGGGATTCGGGAATGTT-GGTTTGCATACAATGCGGTATCTAGTGCGTGCTGGTGCGAAATGTATTGGTATTGCTGAAATCGACGGACAGATTTACAACCCAGATGGTATAGATCCACGAGAACTCGAAGATTGGCAAATCGCAAAT-GGTA--CGATT--GTTGGCTTTCCACATGCAAAGCCATATACAAAAGATTCTCTTCTTTTCGAGGAATGTGATATTCTTATTCCTGCGGCAAATGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATCGGGGAGGGTGCAAATGGT-CCCACTACACCAAAAGCCGATAAAATACTGCGAGAGAAGA-ATAAGTTGGTTATTCCAGATTTGTATCTGAATGCTGGTGGTGTTACTGTGTCGTATTTTGAATGGCTTAAAAATTTAAATCACGTGAGCTATGGTCGACTAACCTTTAAGTACGAACGAGATTCCAACTATCAGTTACTAAATAGTGTACAACAGTCTTTAGAGAAGAAGTTTGCTGACAGAATACCGATAACACCATCCGAAGATTTTCAGCTTCGCATTGCGGGGGCATCTGAGCGCGATATTGTTCACTCTGGTCTAGAGTATACTATGGAGCGATCTGCTAAGCGCATCATGAATATTGGGAATACCTACAACCTTGGATTAGATGTTCGTACAGCTGCATATATCAGTGCTATTGAAAAAATATACAATGTCTATTTGGAATCTGGCTTTGTCTTCACTTAAGTGTCTCGTACAACTTCATACCTTTGTCGTCGAAATTGCAATTACGGCATGACAGATAAAAGATATTCAACTGGCAGTTCTTTTATGTAATCAAA-ATAAAATATCTTTTATAGGTATTGGAAAAAAAAAAAAAAA] [+] EMBL BG931070 [ATCGGTTATAATCATAGCTTCGTTAGAGACCGGGTTCAGTGAAAGCTTGGTTGTTTCCCTACAAAAATGTTAATGGCTTTGCTTAATAATTTAATACATAAGCCTGAAGTTCTCTGTCGAAAATCAATTTTCCGTCTTGTGAACATTCCGAACTGTTTATACAGCACTGAACAAGATGATATACCGTTTCATCTCATGGTTGAAGGATTTTATGATAAAGCTTCAGCCCTTGTTGAACAAAATTTGATATCAAAACTCCAATCAAAAGCGCCAGACAATGAAAAGACGAAAATTGTCAAAGGGA ] [-] EMBL CD166227 [ AAGCTTGGTTGTTTCCCTACAAAAATGTTAATGGCTTTGCTTAATAATTTAATACATAAGCCTGAAGTTCTCTGTCGAAAATC ATTTTCCGTCTTGTGAACATT ] [+] EMBL CD154575 [ TTTATACAGCACTGAACAAGATGATATACCGTTTCATCTCATGGTTGAAGGATTTTATGATAAAGCTTCAGCCCTTGTTGAACAAAATTTGATATCAAAACTCCAATCAAAAGCGCCAGACAATGAAAAGACGAAAATTGTCAAAGGGACCCTCAACATAATTCGGCCACCTACTCACATTTTCGAAGTTAACTTTCCGCACAAAGCTGATGATGGAACATTCAAGATTATTCAAGGCTTTAGAGCTCAACATAGTGTGCACAGGCGACCCACTAAGGGTGGCATTCGGTATAGCATGGACGTGTGCAGAGAAGAAGTTATGGCTCTTGCTGCTCTGATGACGTATAAATGTGCCGTCGTAGATGTTCCATTCGGTGGCGCCAAGGGGGGAATCAAGATAAATCCCAAAGACCACTCTCCAGCAGAATTAGAAAGGATAACCCGTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGT ] [-] EMBL CD154385 [ TTATACAGCACTGAACAAGATGATATACCGTTTCATCTCATGGTTGAAGGATTTTATGATAAAGCTTCAGCCCTTGTTGAACAAAATTTGATATCAAAACTCCAATCAAAAGCGCCAGACAATGAAAAGACGAAAATTGTCAAAGGGACCCTCAACATAATTCGGCCACCTACTCACATTTTCGAAGTTAACTTTCCGCACAAAGCTGATGATGGAACATTCAAGATTATTCAAGGCTTTAGAGCTCAACATAGTGTGCACAGGCGACCCACTAAGGGTGGCATTCGGTATAGCATGGACGTGTGCAGAGAAGAAGTTATGGCTCTTGCTGCTCTGATGACGTATAAATGTGCCGTCGTAGATGTTCCATTCGGTGGCGCCAAGGGGGGAATCAAGATAAATCCCAAAGACCACTCTCCAGCAGAATTAGAAAGGATAACCCGTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGTC ] [-] EMBL CD130800 [ CTTCAGCCCTTGTTGAACAAAATTTGATATCAAAACTCCAATCAAAAGCGCCAGACAATGAAAAGACGAAAATTGTCAAAGGGACCCTCAACATAATTCGGCCACCTACTCACATTTTCGAAGTTAACTTTCCGCACAAAGCTGATGATGGAACATTCAAGATTATTCAAGGCTTTAGAGCTCAACATAGTGTGCACAGGCGACCCACTAAGGGTGGCATTCGGTATAGCATGGACGTGTGCAGAGAAGAAGTTATGGCTCTTGCTGCTCTGATGACGTATAAATGTGCCGTCGTAGATGTT ] [+] EMBL CD117871 [ AACATTCAAGATTATTCAAGGCTTTAGAGCTCAACATAGTGTACACAGGCGACCCACTAAGGGTGGCATTCGGTATAGCATGGACGTGTGCAGAGAAGAAGTTATGGCTCTTGCTGCTCTGATGACGTATAAATGTGCCGTCGTAGATGTTCCATTCGGTGGCGCCAAGGGGGGAATCAAGATAAATCCCAAAGACCACTCTCCAGCAGAATCAGAAAGGATAACCCGTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGTCCCGGAACTGATGTTCCTGCTCCGGATATGGGGACTGGACCTCGGGAGATGAGTTGGATTGCGGATACGTATGCAAACACCGTAGGTCACAACGATATG ] [+] EMBL CD078593 [ CTCAACATAGTGTGCACAGGCGACCCACTAAGGGTGGCATTCGGTATAGCATGGACGTGTGCAGAGAAGAAGTTATGGCTCTTGCTGCTCTGATGACGTATAAATGTGCCGTCGTAGATGTTCCATTCGGTGGCGCCAAGGGGGGAATCAAGATAAATCCCAAAGACCACTCTCCAGCAGAATTAGAAAGGATAACCCGTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGTCCCGGAACTGATGTTCCTGCTCCGGATATGGGGACTGGACCTCGGGAGATGAGTTGGATTGCGGATACGTATGCAAACACCGTAGGTCACAACGATATGCACAGTCATGCTTGTGTAACAGGAAAGTCCATCGCTATGGGTGGTATTCACGGTCGCATTTCGGCCACAGGACGCGGNGTTTATCATGGGATAGACAACTTCTTANATAACCCANAGTATGCGGATGCTATCGGTTTGTCCCCAGGGCTGAAGGATAAAACTTTCATTGTTCA ] [-] EMBL CD185041 [ GTATAAATGTGCCGTCGTAGATGTTCCATTCGGTGGCGCCAAGGGGGGAATCAAGATAAATCCCAAAGACCACTCTCCAGCAGAATTAGAAAGGATAACCCGTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGTCCCGGAACTGATGTTCCTGCTCCGGATATGGGGACTGGACCTCGGGAGATGAGTTGGATTGCGGATACGTATGCAAACACCGTAGGTCACAACGATATGCACAGTCATGCTTGTGTAACAGGAAAGTCCATCGCTATGGGTGGTATTCACGGTCGCA ] [+] EMBL CD200482 [ TAAATCCCAAAGACCACTCTCCAGCAGAATTAGAAAGGATAACCCGTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGTCCCGGAACTGATGTTCCTGCTCCGGATATGGGGACTGGACCTCGGGAGATGAGTTGGATTGCGGATACGTATGCAAACACCGTAGGTCACAACGATATGCACAGTCATGCTTGTGTAACAGGAAAGTCCATCGCTATGGGTGGTATTCACGGTCGCATTTCGGCCACAGGACGCGGGGTTTATCATGGGATAGACAACTTCTTAAATAACCCAAAGTATGCGGATGCTATCGGTTTGTCCCCAGGGCTGAAGGATAAAACTTTCATTGTTCAGGGATTCGGGAATGTT GGTTTGCATACAATGCGGTATCTAGTGCGTGCTGGTGCGAAATGTATTGGTATTGCTGAAATCGACGGAC ] [+] EMBL CD146784 [ AAGGATAACCCGTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGTCCCGGAACTGATGTTCCTGCTCCGGATATGGGGACTGGACCTCGGGAGATGAGTTGGATTGCGGATACGTATGCAAACACCGTAGGTCACAACGATATGCACAGTCATGCTTGTGTAACAGGAAAGTCCATCGCTATGGGTGGTATTCACGGTCGCATTTCGGCCACAGGACGCGGGGTTTATCATGGGATAGACAACTTCTTAAATAACCCAAAGTATGCGGATGCTATCGGTTTGTCCCCAGGGCTGAAGGATAAAACTTTCATTGTTCAGGGATTCGGGAATGTT GGTTTGCATACAATGCGGTA ] [+] EMBL CD127252 [ agacaAGGTAGGTCCATCGCTATGGGCTGTATTCACGGTCGCATTTCGGCCACACGACGCGGGGTTTATCATGGGATAGACAACTTCTTAAATAACCCAAAGTATGCGGATGCTATCGGTTTGTCCCCAGGGCTGAAGGATAAAACTTTCATTGTTCAGGGATTCGGGAATGTT GGTTTGCATACAATGCGGTATCTAGTGCGTGCTGGTGCGAAATGTTTTGGTATTGCTGAAATCGACGGACAGATTTACAACCCAGATGGTATAGATCCACGAGAACTCGAAGATTGGCAAATCGCAAAT GGTA CGATT GTTGGCTTTCCACATGCAAAGCCATATACAAAAGATTCTCTTCTTTTCGAGGAATGTGATATTCTTATTCCTGCGGCAAATGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATCGGGGAGGGTGCAGATG ] [-] EMBL CD112019 [ ACGCGGGGTTTATCATGGGATAGACAACTTCTTAAATAACCCAAAGTATGCGGATGCTATCGGTTTGTCCCCAGGGCTGAAGGATAAAACTTTCATTGTTCAGGGATTCGGGAATGTT GGTTTGCATACAATGCGGTATCTAG ] [+] EMBL CD170364 [ AACTTCTTAAATAACCCAAAGTATGCGGATGCTATCGGTTTGTCCCCAGGGCTGAAGGATAAAACTTTCATTGTTCAGGGATTCGGGAATGTT GGTTTGCATACAATGCGGTATCTAGTGCGTGCTGGTGCGAAATGTATTGGTATTGCTGAAATCGACGGACAGATTTACAACCCAGATGGTATAGATCCACGAGAACTCGAAGATTGGCAAATCGCAAAT GGTA CGATT GTTGGCTTTCCACATGCAAAGCCATATACAAGAGATTCTCTTCTTTTCGAGGAATGTGATATTCTTATTCCTGCGGCAAACGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATCGGGGAGGGTGCAAATGGT CCCACTACACCAAAAGCCGATAAAATACTGCGAGAGAAGA ATAAGTTGGTTATTCCAGATTTGTATCTGAATGCTGGTGGTGTTACTGTGTCGTATTTTGAATGGCTTAAAAATTTAAATCACGTGAGCTATGGTCGACTAACCTTTAAGTACGAACGAGATTCCAACTATCAGTTACT ] [+] EMBL CD180826 [ ATAAAACTTTCATTGTTCAGGGATTCGGGAATGTT GGTTTGCATACAATGCGGTATCTAGTGCGTGCTGGTGCGAAATGTATTGGTATTGCTGAAATCGACGGACAGATTTACAACCCAGATGGTATAGATCCACGAGAACTCGAAGATTGGCAAATCGCAAAT GGTA CGATT GTTGGCTTTCCACATGCAAAGCCATATACAAAAGATTCTCTTCTTTTCGAGGAATGTGATATTCTTATTCCTGCGGCAAATGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATCGGGGAGGGTGCAAATGGT CCCACTACACCAAAAGCCGATAAAATACTGCGAGAGAAGA ATAAGTTGGTTATTCCAGATTTG ] [-] EMBL CD163030 [ AAAACTTTCATTGTTCAGGGATTCGGGAATGTT GGTTTGCATACAATGCGGTATCTAGTGCGTGCTGGTGCGAAATGTATTGGTATTGCTGAAATCGACGGACAGATTTACAACCCAGATGGTATAGATCCACGAGAACTCGAAGATTGGCAAATCGCAAAT GGTA CGATT GTTGGCTTTCCACATGCAAAGCCATATACAAAAGATTCTCTTCTTTTCGAGGAATGTGATATTCTTATTCCTGCGGCAAATGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATCGGGGAGGGTGCAAATGGT CCCACTACACCAAAAGCCGATAAAATACTGCGAGAGAAGA ATAAGTTGGTTATTCCAGATTTGT ] [-] EMBL CD143067 [ cGGAATGTTNGGTTTGCATGCAATGCGGTATCTAGTGCGTGCTGGTGCGAAATGTATTGGTATTGCTGAAATCGACGGACAGATTTACAACNCAGATGGTATAGATCCACGAGAACTCGAAGATTGGCAAATCGCAAAT GGTA CGATT GTTGGCTTTCCACATGCAAAGCCATATACAAAAGATTCTCTTCTTTTCGAGGAATGTGATATCCTTATTCCTGCGGCAAATGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATCGGGGAGGGTGCAAATGGT CCCACTACACCAAAAGCCGATAAAATACTGCGAGAGAAGA ATAAGTTGGTTATTCCAGATTTGT ] [-] EMBL CD091044 [ CTAGTGCGTGCTGGTGCGAAATGTATTGGTATTGCTGAAATCGACGGACAGATTTACAACCCAGATGGTATAGATCCACGAGAACTCGAAGATTGGCAAATCGCAAAT GGTA CGATT GTTGGCTTTCCACATGCAAAGCCATATACAAAAGTTTCTCTTCTTTTCGAGGAATGTGATATTCTTATTCCTGCGGCAAATGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATCGGGGAGGGTGCAAATGGT CCCACTACACCTAAAGCCGATAAAATACTGCGAGAGAAGA ATAAGTTGGTTATTCCAGATTTGTATCTGAATGCTGGTGGTGTTACTGTGTCGTATTTTGAATGGCTTAAAAATTTAAATCACGTGAGCTATGGTCGACTAACCTTTAAGTACGAACGAGATTCCAACTATCAGTTACTAAATAGTG ] [-] EMBL CD144102 [ TGTATTGGTATNGCTGAAATCGACGGACAGATTTACAACCCAGATGGTATAGATCCACGAGAACTCGAAGATTGGCAAATCGCAAAT GGTA CGATT GTTGGCTTTCCACATGCAAAGCCATATACAAAAGATTCTCTTCTTTTCGAGGAATGTGATATTCTTATTCCTGCGGCAAATGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATCGGGGAGGGTGCAAATGGT CCCACTACACCAAAAGCCGATAAAATACTGCGAGAGAAGA ATAAGTTGGTTATTCCAGATTTG ] [+] EMBL CD084410 [ GTATAGATCCACGAGAACTCGAAGATTGGCAAATCGCAAAT GGTA CGATT GTTGGCTTTCCACATGCAAAGCCATATACAAAAGATTCTCTTCTTTTCGAGGAATGTGATATTCTTATTCCTGCGGCAAATGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATCGGGGAGGGTGCCAATTGTCCCCATAAAACCAAAGCCCGTTAAATTACTGCAAGAGAAGATATAAGTTGGTTATTCCAGATTTGTATCTGAATGCTGGTGGTGTTACTGTGTCGTATTTTGAATGGCTTAAAAATTTAAATCACGTGAGCTATGGTCGACTAACCTTTAAGTACGAACGAGATTCCAACTATCAGTTACTAAATAGTGTACAACAGTCTTTAGAGAAGAAGTTTGCTGACAGAATACCGATAACACCATCCGAAGATTTTCAGCTTCGCATTGCGGGGGCATCTGAGCGCGATATTGTTCACTC ] [-] EMBL CD075519 [ GAAGATTGGCAAATCGCAAAT GGTA CGATT GTTGGCTTTCCACATGCAAAGCCATATACAAAAGATTCTCTTCTTTTCGAGGAATGTGATATTCTTATTCCTGCGGCAAATGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATCGGGGAGGGTGCAAATGGT CCCACTACACCAAAAGCCGATAAAATACTGCGAGAGAAGA ATAAGTTGGTTATTCCAGATTTGTATCTGAATGCTGGTGGTGTTACTGTGTCGTATTTTGAATGGCTTAAAAATTTAAATCACGTGAGCTATGGTCGACTAACCTTTAAGTACGAACGAGATTCCAACTATCAGTTACTAAATAGTGTACAACAGTCTTTAGAGAAGAAGTTTGCTGACAGAATACCGATAACACCATCCGAAGATTTTCAGCTTCGCATTGCGGGGGCATCTGAGCGCGATATTGTTCACTCTGGTCTAGAGTATACTATGGAGCGATCTGCTAAGCGCATCATGAATATTGGGAATACCTACAACCTTGGATTAGATGTTCGTACAGCTGCATATATCAGTGCTATTGAAAAAATATACAATGTCTATTTGGAATCTGGCTTTGTCTTCACTTAAGTGTCTCGTACAACTTCATACCTTTGTCGTCGAAATTGCAATTACGGCATGACAGATAAAAGATATTCAACTGGCAGTTCTTTTATGTAATCAAAGATAAAATATCTTTTA ] [+] EMBL CD081788 [ GGCAAATCGCAAATGGGTACCCGATTGGGTTGGCTTTCCACATGCAAAGCCATATACAAAAGATTCTCTTCTTTTCGAGGAATGTGATATTCTTATTCCTGCGGCAAATGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATCGGGGAGGGTGCAAATGGT CCCACTACACCAAAAGCCGATAAAATACTGCGAGAGAAGA ATAAGTTGGTTATTCCAGATTTGTATCTGAATGCTGGTGGTGTTACTGTGTCGTATTTTGAATGGCTTAAAAATTTAAATCACGTGAGCTATGGTCGACTAACCTTTAAGTACGAACGAGATTCCAACTATCAGTTACTAAATAGTGTACAACAGTCTTTAGAGAAGAAGTTTGCTGACAGAATACCGATAACACCATCCGAAGATTTTCAGCTTCGCATTGCGGGGGCATCTGAGCGCGATATTGTTCACTCTGGTCTAGAGTATACTATGGAGCGATCTGCTAAGCGCATCATGAATATTGGGAATACCTACAACCTTGGATTAGATGTTCGTACAGCTGCATATATCAGTGCTATTGAAAAAATATACAATGTCTATTTGGAATCTGGCTTTGTCTTCACTTAAGTGTCTCGTACAACTTCATACCTTTGTCGTCGAAATTGCAATTACGGCATGACAGATAAAAGATATTCAACTGGCAGTTCTTTTATGTAATCAAA ATAAAATATCTTTTA ] [+] EMBL CD132689 [ TATGGTCGACTAACCTTTAAGTACGAACGAGATTCCAACTATCAGTTACTAAATAGTGTACAACAGTCTTTAGAGAAGAAGTTTGCTGACAGAATACCGATAACACCATCCGAAGATTTTCAGCTTCGCATTGCGGGGGCATCTGAGCGCGATATTGTTCACTCTGGTCTAGAGTATACTATGGAGCGATCTGCTAAGCGCATCATGAATATTGGGAATACCTACAACCTTGGATTAGATGTTCGTACAGCTGCATATATCAGTGCTATTGAAAAAATATACAATGTCTATTTGGAATCTGGCTTTGTCTTCACTTAAGTGTCTCGTACAACTTCATACCTTTGTCGTCGAAATT ] [-] EMBL AI395282 [ TAAATTGTGACCAACAGTCTTTAGAGAAGAAGTNTGCTGACAGAATACCGATAACACCATCCGAAGATTTTCAGCTTCGCATTGCGGGGGCATCTGAGCGCGATATTGTTCACTCTGGTCTAGAGTATACTATGGAGCGATCTGCTAAGCGCATCATGAATATTGGGAATACCTACAACCTTGGATTAGATGTTCGTACAGCTGCATATATCAGTGCTATTGAAAAAATATACAATGTCTATTTGGAATCTGGCTTTGTCTTCACTTAAGTGTCTCGTACAACTTCATACCTTTGTCGTCGAAATTGCAATTACGGCATGACAGATAAAAGATATTCAACTGGCAGTTCTTTTATGTAATCAAA ATAAAATATCTTTTATAGGTATTGGAAAAAAA ] [-] EMBL AI395661 [ GATAACACCATCCGAAGATTTTCAGCTTCGCATTGCGGGGCCATTCGAGCGCGATATTGTTCACTCTGGTCTAGAGTATCCTATGGAGCGATCTGCTAAGCGCATCATGAATATTGGGAATACCTACAACCTTGGATTAGATGTTCGTACAGCTGCATATATCAGTGCTATTGAAAAAATATACAATGTCTATTTGGAATCTGGCTTTGTCTTCACTTAAGTGTCTCGTACAACTTCATACCTTTGTCGTCGAAATTGCAATTACGGCATGACAGATAAAAGATATTCAACTGGCAGTTCTTTTATGTAATCAAA ATAAAATATCTTTTATAGGTATTGAAAAAAAAAAAAAAAA] consensusID : consensus_10946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [GATCATACCATTTGCGTTGATTACGAACTTCCATGTCCAACGTTTTACTGTTAGCCGCTGCACTTTAACTTTTCAGGGGGTTTATCATGGGATAGACAACTTCTTAAATAACCCAAAGTATGCGGATGCTATCGGTTTGTCCCCAGGGCTGAAGGATAAAACTTTCATTGTTCAGGGATTCGGGAATGTTGGTTTGCATACAATGCGGTATCTAGTGCGTGCTGGTGCGAAATGTATTGGTATTGCTGAAATCGACGGACAGATTTACAACCCAGATGGTATAGATCCACGAGAACTCGAA] [+] EMBL CD063381 [GATCATACCATTTGCGTTGATTACGAACTTCCATGTCCAACGTTTTACTGTTAGCCGCTGCACTTTAACTTTTCAGGGGGTTTATCATGGGATAGACAACTTCTTAAATAACCCAAAGTATGCGGATGCTATCGGTTTGTCCCCAGGGCTGAAGGATAAAACTTTCATTGTTCAGGGATTCGGGAATGTTGGTTTGCATACAATGCGGTATCTAGTGCGTGCTGGTGCGAAATGTATTGGTATTGCTGAAATCGACGGACAGATTTACAACCCAGATGGTATAGATCCACGAGAACTCGAA] consensusID : consensus_10946#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [ACGTATAAATGTGCCGTCGTAGATGTTCCATTCGGTGGCGCCAAGGGGGGAATCAAGATAAATCCCAAAGACCACTCTCCAGCAGAATTAGAAAGGATAACCCGTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGTCCCGGTACTGATGTTCCTGCTCCGGATATGGGGACAAACCGATAGCATACCACATAC] [-] EMBL CD063728 [ACGTATAAATGTGCCGTCGTAGATGTTCCATTCGGTGGCGCCAAGGGGGGAATCAAGATAAATCCCAAAGACCACTCTCCAGCAGAATTAGAAAGGATAACCCGTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGTCCCGGTACTGATGTTCCTGCTCCGGATATGGGGACAAACCGATAGCATACCACATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10946#0 ATCGGTTATAATCATAGCTTCGTTAGAGACCGGGTTCAGTGAAAGCTTGGTTGTTTCCCT 60 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 ACAAAAATGTTAATGGCTTTGCTTAATAATTTAATACATAAGCCTGAAGTTCTCTGTCGA 120 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 AAATCAATTTTCCGTCTTGTGAACATTCCGAACTGTTTATACAGCACTGAACAAGATGAT 180 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 ATACCGTTTCATCTCATGGTTGAAGGATTTTATGATAAAGCTTCAGCCCTTGTTGAACAA 240 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 AATTTGATATCAAAACTCCAATCAAAAGCGCCAGACAATGAAAAGACGAAAATTGTCAAA 300 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 GGGACCCTCAACATAATTCGGCCACCTACTCACATTTTCGAAGTTAACTTTCCGCACAAA 360 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 GCTGATGATGGAACATTCAAGATTATTCAAGGCTTTAGAGCTCAACATAGTGTGCACAGG 420 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 CGACCCACTAAGGGTGGCATTCGGTATAGCATGGACGTGTGCAGAGAAGAAGTTATGGCT 480 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 -------------------------------------------GATCATACCATTTGCGT 17 consensus_10946#0 CTTGCTGCTCTGATGACGTATAAATGTGCCGTCGTAGATGTTCCATTCGGTGGCGCCAAG 540 consensus_10946#2 ---------------ACGTATAAATGTGCCGTCGTAGATGTTCCATTCGGTGGCGCCAAG 45 consensus_10946#1 TGATTACGAACTTCCATGTCCAACGTTTTACTGTTAGCCGCTGCACTTTAACTTTTCAGG 77 * ** ** * * *** * * ** * ** * consensus_10946#0 GGGGGAATCAAGATAAATCCCAAAGACCACTCTCCAGCAGAATTAGA--AAGGATAACCC 598 consensus_10946#2 GGGGGAATCAAGATAAATCCCAAAGACCACTCTCCAGCAGAATTAGA--AAGGATAACCC 103 consensus_10946#1 GGGTTTATCATGGG-------ATAGACAACTTCTTAAATAACCCAAAGTATGCGGATGCT 130 *** **** * * **** *** * * * * * * * * consensus_10946#0 GTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGTCCCGGAACT-GATGTTCCT 657 consensus_10946#2 GTCGGTTTGCTCTTGAGTTGGCAAAACAAGGATTTCTTGGTCCCGGTACT-GATGTTCCT 162 consensus_10946#1 ATCGGTTTGTCCCCAGGGCTGAAGGATAAAACTTTCATTGTTCAGGGATTCGGGAATGTT 190 ******** * * * * * ** **** * ** * ** * * * * * consensus_10946#0 GCTCCGGATATGGGGACTGGACCTCGGGAGATGAGTTGGATTGCGGATACGTATGCAAAC 717 consensus_10946#2 GCTCCGGATATGGGGACAAACCGATAGCATACCACATAC--------------------- 201 consensus_10946#1 GGTTTGCATACAATGCGGTATCTAGTGCGTGCTG-GTGCGAAATGTATTGGTATTGCTGA 249 * * * *** * * * * consensus_10946#0 ACCGTAGGTCACAACGATATGCACAGTCATGCTTGTGTAACAGGAAAGTCCATCGCTATG 777 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 AATCGACGGACAGATTTACAACCCAGATGGTATAGATCCACGAGAACTCGAA-------- 301 consensus_10946#0 GGTGGTATTCACGGTCGCATTTCGGCCACAGGACGCGGGGTTTATCATGGGATAGACAAC 837 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 TTCTTAAATAACCCAAAGTATGCGGATGCTATCGGTTTGTCCCCAGGGCTGAAGGATAAA 897 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 ACTTTCATTGTTCAGGGATTCGGGAATGTTGGTTTGCATACAATGCGGTATCTAGTGCGT 957 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 GCTGGTGCGAAATGTATTGGTATTGCTGAAATCGACGGACAGATTTACAACCCAGATGGT 1017 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 ATAGATCCACGAGAACTCGAAGATTGGCAAATCGCAAATGGTACGATTGTTGGCTTTCCA 1077 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 CATGCAAAGCCATATACAAAAGATTCTCTTCTTTTCGAGGAATGTGATATTCTTATTCCT 1137 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 GCGGCAAATGAAAAACAAATCCATAGTGGCAACGCAGATAAGATCAGAGCAAAACTAATC 1197 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 GGGGAGGGTGCAAATGGTCCCACTACACCAAAAGCCGATAAAATACTGCGAGAGAAGAAT 1257 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 AAGTTGGTTATTCCAGATTTGTATCTGAATGCTGGTGGTGTTACTGTGTCGTATTTTGAA 1317 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 TGGCTTAAAAATTTAAATCACGTGAGCTATGGTCGACTAACCTTTAAGTACGAACGAGAT 1377 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 TCCAACTATCAGTTACTAAATAGTGTACAACAGTCTTTAGAGAAGAAGTTTGCTGACAGA 1437 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 ATACCGATAACACCATCCGAAGATTTTCAGCTTCGCATTGCGGGGGCATCTGAGCGCGAT 1497 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 ATTGTTCACTCTGGTCTAGAGTATACTATGGAGCGATCTGCTAAGCGCATCATGAATATT 1557 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 GGGAATACCTACAACCTTGGATTAGATGTTCGTACAGCTGCATATATCAGTGCTATTGAA 1617 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 AAAATATACAATGTCTATTTGGAATCTGGCTTTGTCTTCACTTAAGTGTCTCGTACAACT 1677 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 TCATACCTTTGTCGTCGAAATTGCAATTACGGCATGACAGATAAAAGATATTCAACTGGC 1737 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ consensus_10946#0 AGTTCTTTTATGTAATCAAAATAAAATATCTTTTATAGGTATTGGAAAAAAAAAAAAAAA 1797 consensus_10946#2 ------------------------------------------------------------ consensus_10946#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||