These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 635 fasta sequence [AACTTGTTTCACATTATCAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA-GACTCGCACTGT-CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG-ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATG-AACATCATCTTGTAATTTATAAATACANTGTGCTA] [+] EMBL CD179692 [AACTTGTTTCACATTATCAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGTCCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTATATGGAAGACTTATTGGCGCCAACCCATCT ] [+] EMBL CD132938 [ AGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCG TTGCA ] [+] EMBL CD135747 [ GCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACGCCATACTTCGTTTTCTTCAA GATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATG AACATCATCTTGTAATT ] [+] EMBL CD092004 [ GCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCGAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAG ] [-] EMBL CD189240 [ GCGTTACAACTCAGCGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAA ] [+] EMBL CD097248 [ GCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATAT ] [-] EMBL CD091982 [ CGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGG ] [+] EMBL AA559731 [ TGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAANATGAAAATGTGGATGATACGANCAAAAGGGTCNTTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAAT ] [-] EMBL CD121601 [ ATCAT ATCCT TAT ACACGATCA TGATGA GAAA CAAACGAGGCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATT ATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGT ] [+] EMBL CD134571 [ GATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATGGATTAACTCANGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATG AACATCATCTTGTAAT ] [+] EMBL AF358139 [ TATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGCCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATG ] [-] EMBL CD097218 [ AAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTG ] [-] EMBL CD121545 [ cttatacacGATCA TGATGA GAAA CAAACGAGGCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATT ATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGT ] [+] EMBL CD179821 [ TCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAG ] [-] EMBL CD097258 [ TGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTG ] [+] EMBL CD161543 [ ccCTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGACGACTCGAGGGTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAATATGAAAATGTGGATGATACTAGCAGAAGGGCCGATGATTTATTTCACGCTAATGGTTGCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGGTCCCTTACTTAAATCTCACGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGA ] [+] EMBL CD200248 [ aGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTT ] [+] EMBL CD161904 [ TTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCATAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAACCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTNTCTTCAAG ] [-] EMBL CD144924 [ TTCAAGTAATGTAGATGGAAGACTTATGGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGC ] [-] EMBL CD166104 [ TGGATGATACGAGCAAAGGNGTCATTGATNTAGTTCACGCTAATGGTNTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAGGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGG ] [+] EMBL CD185852 [ GAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTT ] [+] EMBL SM6211 [ CCTTGNATAACTTTGACCAATATGAGTTTTACATGGGTCCGCCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAAACATCATCTTGTAATTTATAAATACANTGTGCTA] [+] EMBL SMAA43888 [ AATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATG AACATCATCTTGTAATTTATAAATACAATGTGCTA] consensusID : consensus_10999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 449 fasta sequence [CAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAA-AAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAA-AGATCATACAAAGCGCATCTTAATAGCGTTTGCAAAAGACTGATTCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATTCTGATGCCATGATAG] [+] EMBL CD097256 [CAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAA AAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAA AGATCATACAAAGCGCATCTTAATAGCGTTTGCAAAAGACTGATTCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATTCTGATGCCATGATAG] [+] EMBL SM681 [ TGTATAAGGNTATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGNAGATGAAAATGTGGATGATACGAGCAACCAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAGTGATCATACANAGCGCATCTTAAgct ] consensusID : consensus_10999#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 416 fasta sequence [CTCGAGGCANGATCGGCACGAGGTTTGTTTCTCATCATGATCGTGTATAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTT] [+] EMBL CD084127 [CTCGAGGCANGATCGGCACGAGGTTTGTTTCTCATCATGATCGTGTATAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTT] [+] EMBL CD132386 [ TGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGCGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCA ] consensusID : consensus_10999#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [AGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAACATCATCTTGTAATTTTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTCCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAACATCATCTTGTAATT] [+] EMBL CD066657 [AGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAACATCATCTTGTAATTTTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTCCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAACATCATCTTGTAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10999#1 -----------------CAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGAT 43 consensus_10999#2 ----------------CTCGAGGCANGA-TCGGCACGAG--GTTTGTTTCTCATCATGAT 41 consensus_10999#0 AACTTGTTTCACATTATCAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGAT 60 consensus_10999#3 ------------------------------------------------------------ consensus_10999#1 CGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGT 103 consensus_10999#2 CGTGTATA-GGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGT 100 consensus_10999#0 CGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGT 120 consensus_10999#3 ----------------------AGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAACAT 38 * * **** * * * * * consensus_10999#1 TGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGA 163 consensus_10999#2 TGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGA 160 consensus_10999#0 TGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGA 180 consensus_10999#3 CATCTTGTAATTTTATAATAGAGCGTTTGCAA-----AAGACTGATCCAGACAAAGTTCC 93 ** * * ** * * ** ** * * * *** * * ** ** ** consensus_10999#1 TGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGA 223 consensus_10999#2 TGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGA 220 consensus_10999#0 TGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGA 240 consensus_10999#3 CTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGAT--AACTTTGACCAA 151 * * * **** * ** ** *** ** * ** * consensus_10999#1 TACGAGC---AAAAGGGTCATTGATTTAGTTC--ACGCTA--ATGGTTTCATTAGTGTTC 276 consensus_10999#2 TACGAGC---AAAAGGGTCATTGATTTAGTTC--ACGCTA--ATGGTTTCATTAGTGTTC 273 consensus_10999#0 TACGAGC---AAAAGGGTCATTGATTTAGTTC--ACGCTA--ATGGTTTCATTAGTGTTC 293 consensus_10999#3 TATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTC 211 ** *** * * ***** * ** ** * * * ** * ** **** * *** consensus_10999#1 CTTTCGACCAAAGATCATACAAAGCGCATCTTAAT----------------------AGC 314 consensus_10999#2 CTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGC 333 consensus_10999#0 CTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGC 353 consensus_10999#3 CGTGAGGACGGT-ATGACACCATACTCCGTTTTCT------------------------- 245 * * * * ** * ** * * * ** * consensus_10999#1 GTTTGCAAAAGACTGATTCAGACAAAGTTCCCT--TACTTAAATCTCAGGTCAACAAG-T 371 consensus_10999#2 GTTTGCAAAAGACTGATCCAGACAAAGTTCCCT--TACTTAAATCTCAGGTCAACAAG-T 390 consensus_10999#0 GTTTGCAAAAGACTGATCCAGACAAAGTTCCCT--TACTTAAATCTCAGGTCAACAAG-T 410 consensus_10999#3 -TCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGAT 304 * * ** * * *** *** * *** **** * * consensus_10999#1 ACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTA 431 consensus_10999#2 ACATGAAGAATGTCCTTGATAACTTT---------------------------------- 416 consensus_10999#0 ACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTA 470 consensus_10999#3 TCATGAACATCATCTT--GTAATT------------------------------------ 326 ****** * ** * *** * consensus_10999#1 ATTCTGATGCCATGATAG------------------------------------------ 449 consensus_10999#2 ------------------------------------------------------------ consensus_10999#0 ATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCG 530 consensus_10999#3 ------------------------------------------------------------ consensus_10999#1 ------------------------------------------------------------ consensus_10999#2 ------------------------------------------------------------ consensus_10999#0 TTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTT 590 consensus_10999#3 ------------------------------------------------------------ consensus_10999#1 --------------------------------------------- consensus_10999#2 --------------------------------------------- consensus_10999#0 GGGATTCATGAACATCATCTTGTAATTTATAAATACANTGTGCTA 635 consensus_10999#3 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||