These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1288 fasta sequence [AGCTGGAACTATCTGTACTTGAATGTTCATTCTGTGACATGGCTGTTTTATCAGGATCACTGGTACCATAGGCGTGAGATCCTCCGAAAGGACCACCTGAATTTTGTTGCATTCCAGGTCTCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT-CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCC-GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC-GGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTATTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGACCGGGGGCTCCGCGAGATCCCTGCATTTGGACACCGCGACCACTACCTCCGTACCCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAGTGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCACGACTTCGATCACGTGAAGCATTGTAACCGCCTCTGTAGTCACGGCGACCACGATCATCATTTCGGCGGTTCGGAGAGCTTCGAAAATCATCCCGTCGTCCACGCGGCATGTCACGACCACGATCTCGGCTATCCCGCCCGCGGAAACGTGA] [+] EMBL CD181123 [AGCTGGAACTATCTGTACTTGAATGTTCATTCTGTGACATGGCTGTTTTATCAGGATCACTGGTACCATAGGCGTGAGATCCTCCGAAAGGACCACCTGAATTTTGTTGCATTCCAGGTCTCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGGTATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCG ] [+] EMBL CD066425 [ CCATAGGCGTGAGATCCTCCGAAAGGACCACCTGAATTTTGTTGCATTCCAGGTCTCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGAT ] [+] EMBL CD129264 [ cTAGGCGTGAGATCCTCCGAAAGGACCACCTGAATTTTGTTGCATTCCAGGTCTCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCC GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC GGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTATTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGACCGGGGGCTCCGCGAGATCCCTGCATTTGGACACCGCGACCACTACCTCCGTACCCTCCTCTAAAGCCTCC ] [+] EMBL CD131087 [ ATTCCAGGTCTCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAATTACCCTGATCACCAGCATATGAGTTGGGATAATTAGAAGCGGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATNATCATCATTTGGTGGCCCCG ] [+] EMBL CD145378 [ TAGGGTTTGTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCC GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC GGAAACGGGTGCGTTACGACCCAGT ] [+] EMBL CD185014 [ GTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAA TAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTCGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGTCCCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCG ] [+] EMBL CD131092 [ GTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCG ] [+] EMBL CD143017 [ TGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGAT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCCNGCC ATCATATCACGATCAGGCTGAGCACCGCCACAACCGGGGAACGGGTG ] [+] EMBL CD129265 [ gCCACCGCCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTACGGACCTGGT CCGCCAAAACGCCTGTTTCGATAATCATAATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTGTGATAACCTTCCGCACCACCGTACATATTAT ] [+] EMBL CD182892 [ TTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCC GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC GGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTATTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGA ] [-] EMBL CD091782 [ GTCTGTTTCGATAATCATCATTTGGTGGCCCCGGAAATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCC GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC GGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTATTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGACCGGGGGCTCCGCGAGATCCCTGCATTTGGACACCGCGACCACTACATCCGTACCCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATC ] [-] EMBL CD091762 [ ACCTTCCGCACCGCCGTACATATTATACTGTTGGCCATCGTCGGGAAATCC GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC GGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTATTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGACCGGGGGCTCCGCGAGATCCCTGCATTTGGACACCGCGACCACTACCTCAGTACCCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATCGCCAATCGGCTCTGCATC ] [-] EMBL CD191097 [ TCCGCGAGATCCCTGCATTTGGACACCGCGACCACTACCTCCGTACCCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAGTGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAA ] [+] EMBL CD119179 [ GGACACCGCGACCACTACCTCCGTACCCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAGTGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCACGACTTCGATCACGTGAAGCATTGTAAACG ] [-] EMBL CD135957 [ CCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAGTGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACA ] [+] EMBL CD142563 [ GCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAGTGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCANAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGANACGACCACCAGGAGGACCACCACCAT ] [+] EMBL CD120091 [ CCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCACGACTTCGATCACGTGAAGCATTGTAACCGCCTCTGTAGTCACGGCGACCACGATCATCATTTCGGCGGTTCGGAGAGCTTCGAAAATCATCCCGTCGTCCACGCGGCATGTCACGACCACGATCTCGG ] [+] EMBL CD060656 [ GCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCAACATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCAGCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCACGACTACGATCACGTGAAGCATTGTAACCGCCTCGGTAGTCACGGCGACCACGATCATCATTTCGGCGGTTCGGAGAGCTTCGAAAATCATCTCGTCGTCCACGCGGCATGTCACGACCACGATCTCGGCTATCCCGCCCGCGGAAACGTGA] [-] EMBL CD134008 [ GAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCACGACTTCGATCACGTGAAGCATTGTAACCGCCTCTGTAGTCACGGCGACCACGATC ] consensusID : consensus_11063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1004 fasta sequence [TCAGGTGGTCCTTTCGGAGGATCTCACGCCTATGGTACC-AGTGATCCTGATAAAACAGCCATGTCACAGAATGAACATTCAAGTACAGAGCACTACTTATAATCCACCATCACAATCAGTTAATCGGCCGCAACCTCAAGTACAACAAACTGCAACATCAACCCAGCAAGCTCAACCGCAAAGTTACGGGTATGGTTATTCTACTCAGAATACAAAACTGGATGGAAGTAGTAATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGGATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA-GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACAT-CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG-AAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG-GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCAAATCCTTATGCAAGCTATTACCCTGGGTATTCTACTTATCCATCTGGGTATGGTACTATCCCAGTTGGCGGTGCTCCTCCAGGTGGGGTCCCAACTGCTGCCGCTCCGCCAGCAATGAGTCAATATTACACCGGTTATCGCTAAAATNGATTTATGAACTTAATTCCTCGTAATACATCTAGTTAAACTCTAATTTGTTTCACATTTCCATTGTGCTATCATTTTGTCTCACTCGTCCTGTCCATTATGCACAAGTGTTACAAATCAATCATTAAAAATTTCTTTATTATAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD198449 [TCAGGTGGTCCTTTCGGAGGATCTCACGCCTATGGTACC AGTGATCCTGATAAAACAGCCATGTCACAGAATGAACATTCAAGTACAGAGCACTACTTATAATCCACCATCACAATCAGTTAATCGGCCGCAACCTCAAGTACAACAAACTGCAACATCAACCCAGCAAGCTCAACCGCAAAGTTACGGGTATGGTTATTCTACTCAGAATACAAAACTGGATGGAAGTAGTAATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGGATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGNCAACACCACTACTGgc ] [-] EMBL CD198475 [ TACCAAGTGATCCTGATAAAACAGCCATGTCACAGAATGAACATTCAAGTACAGAGCACTACTTATAATCCACCATCACAATCAGTTAATCGGCCGCAACCTCAAGTACAACAAACTGCAACATCAACCCAGCAAGCTCAACCGCAAAGTTACGGGTATGGTTATTCTACTCAGAATACAAAACTGGATGGAAGTAGTAATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGGATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA GCAGTCACTATATG ] [-] EMBL CD063769 [ GTAATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGGATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCACCAGTTTCTTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGCATGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATCGCTCCCGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGTCTGTCTCTGAGTAGTGTATCCAGCAGCGTCCCAAGTGCTC ] [-] EMBL CD171067 [ AATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGGATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCCTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCA ] [+] EMBL AI976613 [ ACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAACTGGGAAAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCAAATCCTTATGCAAGCTATTACCCTGNGTATTCTACTTATCCATCTGGGTATGGTACTATCCCAGTTGGCGGTGCTCCTCCAGGTGGGGTCCCAACTGCTGCCGCTCCGCCAGCAATGAGTCAATATTACACCGGTTATCGCTAAAATNGATTTATGAA ] [+] EMBL CD144604 [ CAACTGGTACCACCCA GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACATGGTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAA ] [+] EMBL CD144735 [ CCACGGAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCAAATCCTTATGCAAGCTATTACCCTGGGTATTCTACTTATCCATCTGGGTATGGTACTATCCCAGTTGGCGGTGCTCCTCCgtg ] [-] EMBL CD144693 [ CACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCAAATCCTTATGCAAGCTATTACCCTGGGTATTCTACTTATCCATCTGGGTATGGTACTATCCCAGTTGGCGGTGCTCCTCC GTGG ] [-] EMBL CD158510 [ AGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATGGCTGCTGCACAACAGTCTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAGCACCACAGACACCAGCCGCAAATCCTTATGCAAGCTATTACCCTGGGTATTCTACTTATCCATCTGGGTATGGTACTATCCCAGTTGGCGGTGCTCCTCCAGGTGGGGT ] [-] EMBL AI395035 [ CCAGGTGGGGTCCCAACTGCTGCCGCTCCGCCAGCAATGAGTCAATATTACACCGGTTATCGCTAAAATTGATTTATGAACTTAATTCCTCGTAATACATCTAGTTAAACTCTAATTTGTTTCACATTTCCATTGTGCTATCATTTTGTCTCACTCGTCCTGTCCATTATGCACAAGTGTTACAAATCAATCATTAAAAATTTCTTTATTATAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11063#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [CTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAAGGATATCGAGTGTCTAATCAAGTTCCAGAATATCCGTAATGTGTGGCGGGATTCC] [+] EMBL CD157466 [CTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAAGGATATCGAGTGTCTAATCAAGTTCCAGAATATCCGTAATGTGTGGCGGGATTCC] consensusID : consensus_11063#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [GCCTGGCAGGTCGACTTTAGAAGGATCCCCCTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAAC] [+] EMBL CD063408 [GCCTGGCAGGTCGACTTTAGAAGGATCCCCCTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 ------------------------------------------------------------ consensus_11063#0 AGCTGGAACTATCTGTACTTGAATGTTCATTCTGTGACATGGCTGTTTTATCAGGATCAC 60 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 ------------------------------------------------------------ consensus_11063#0 TGGTACCATAGGCGTGAGATCCTCCGAAAGGACCACCTGAATTTTGTTGCATTCCAGGTC 120 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 ------------------------------------------------------------ consensus_11063#0 TCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAAT 180 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 ------------------------------------------------------------ consensus_11063#0 TACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATG 240 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 ------------TCAGGTGGTCCTTTCGGAGGATCTCACGCCTATGGTACCAGTGATCCT 48 consensus_11063#0 AAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCAC 300 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 GATAAAACAGCCATGTCACAGAATGAACATTCAAGTACAGAGCACTACTTATAATCCACC 108 consensus_11063#0 CTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCA 360 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 ATCACAATCAGTTAATCGGCCGCAACCTCAAGTACAACAAACTGCAACATCAACCCAGCA 168 consensus_11063#0 ATGCGTTTGCGTTGTAGGGACCTGGTCCGCCAAAACGTCTGTTTCGATAATCATC-ATTT 419 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 AGCTCAACCGCAAAGTTACGGGTATGGTTATTCTACTCAGAATACAAAACTGGATGGAAG 228 consensus_11063#0 GGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATA 479 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 TAGTAATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGG 288 consensus_11063#0 TTATACTGTTGGCTATCGTCGGGAAATCCGCCAATCATATCACGATCAGGCTGAGCACCG 539 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 ATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACC 348 consensus_11063#0 CCACGACCGGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTA 599 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 CACAACTGGTACCACCCAGCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACT 408 consensus_11063#0 TTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGACCGGGG 659 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 AACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACATCTGA 468 consensus_11063#0 GCTCCGCGAGATCCCTGCATTTGGA--CACCGCGACCACTACCTCCGTACCCTCCTCTAA 717 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 CCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGC 528 consensus_11063#0 AGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATAT 777 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 TACTGGAAGTACTCAAGGAGCTGGGAAGTACGATGCAGCGATGGCTGCTGCACAACAGTT 588 consensus_11063#0 CATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAG 837 consensus_11063#2 ------------------------------------------------------------ consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 TAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTGGTAGTGTATCCAGCAGCGT 648 consensus_11063#0 TGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTC 897 consensus_11063#2 --------CTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTC--GATACAACTACA 50 consensus_11063#3 -------------------------GCCTGGCAGGTCGACTTTAGAAGGATCCCCCTACA 35 consensus_11063#1 CCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCAAATCCTTATGCAAG 708 consensus_11063#0 GTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCA 957 consensus_11063#2 CCTCTTCACAGTCCACTCTCTCCA--TCGCCAAACCAACACCA--CCGTCTTCGCTCCTG 106 consensus_11063#3 CCTCTTCACAGTCCACTCTCTCCA--TCGCCAAACCAACACCA--CCGTCTTCGCTCCTG 91 consensus_11063#1 CTATTACCCTGGGTATTCTACTTA--TCCATCTGGGTATGGTA--CTATCCCAGTTGGCG 764 consensus_11063#0 TCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTG 1017 * * * * * * * * * * consensus_11063#2 AAACTCATCAACCAACCA----CTCTTGTCG-CCGCCACCGCCGCCGCCACAAAAACTAT 161 consensus_11063#3 AAACTCATCAACCAACCA----CTCTTGTCG-CCGCCACCGCCGCCGCCACAAAAACTAT 146 consensus_11063#1 GTGCTCCTCCAGGTGGGG----TCCCAACTG-CTGCCGCT-CCGCCAGCAATGAGTCAAT 818 consensus_11063#0 GAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTC 1077 ** * * * * ** ** ** * consensus_11063#2 -ACTCC-CGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCT-CGCTCACATCTCT 218 consensus_11063#3 -ACTCC-CGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCT-CGCTCACATCTCT 203 consensus_11063#1 -ATTACACCGGTTATCGCTAAAATN-GATTTATGAACTTAATTCCT-CG-TAATACATCT 874 consensus_11063#0 CACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCAC 1137 * * * * * * * * * ** * consensus_11063#2 CGATACAACTACACCT--CTTCACAGTCCACTCTCTCCATC-----GCCAAACCAAGGAT 271 consensus_11063#3 CGATACAACTACACCT--CTTCACAGTCCACTCTCTCCATC-----GCCAAACCAAC--- 253 consensus_11063#1 AGTTAAACTCTAATTTG-TTTCACATTTCCATTGTGCTATCATTTTGTCTCACTCGTCCT 933 consensus_11063#0 GACTTCGATCACGTGAAGCATTGTAACCGCCTCTGTAGTCACGGCGACCACGATCATCAT 1197 * * * * * consensus_11063#2 ATCGAGTGTCTAATCAAGTTCCAGAATATCCGTAATGTGTGGCGGGATTCC--------- 322 consensus_11063#3 ------------------------------------------------------------ consensus_11063#1 GTCCATTATGCACAAGTGTTACAAATCAATCATTAAAAATTTCTTTATTATAAAAAAAAA 993 consensus_11063#0 TTCGGCGGTTCGGAGAGCTTCGAAAATCATCCCGTCGTCCACGCGGCATGTCACGACCAC 1257 consensus_11063#2 ------------------------------- consensus_11063#3 ------------------------------- consensus_11063#1 AAAAAAAAAAA-------------------- 1004 consensus_11063#0 GATCTCGGCTATCCCGCCCGCGGAAACGTGA 1288 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||