These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 28 consensus length = 1630 fasta sequence [ACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAGAAATGAATATTGCTACGTAAACACAAGATAATACCGTATAATAGAAATTACAGAACTATGTAAGTATAATTGGATTGTAAGCAATAACATCACAACTTGATATTTTAAACACTGATAATTTTTCTATAGAAGAAGCCACCAAGTTTTATCCCGAATACGATTGTAATCAAGCATGGTTTCCACTGGACCGATAGACGCGACAGCAGGGCATTTATCAAAAAAGTACTTCATGCATATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT-AAA-AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGGTCGCATAGATGCTTATGGTCGATTCCTCCTGCAGCACTGAGCACCATTCGTGGTGCTTTATAGTTGTGTTTGATAAAATTCTTCATATCACTGGCTTTCAAAGATTTGACATTTTCTACAGGTCCAAGAAT-TGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCC-GAACCAATCTTCCTATGACGTATTGA-GGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATCGAAGTGCCATACCCAGCACGTAACGAA] [+] EMBL AI976679 [ACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAGAAATGAATATTGCTACGTAAACACAAGATAATACCGTATAATAGAAATTACAGAACTATGTAAGTATAATTGGATTGTAAGCAATAACATTACAACTTGATATTTTAAACACTGATAATTTTTCTATAGAAGAAGCCACCAAGTTTTATCCCGAATACGATTGTAATCAAGCATGGTTTCCACTGGACCGATAGACGCGACAGCAGGGCATTTATCAAAAAAGTACTTCATGCATATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTTACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTTCAACAGATTCA ] [+] EMBL CD076057 [ ACACAAGATAATACCGTATAATAGAAATTACAGAACTATGTAAGTATAATTGGATTGTAAGCAATAACATCACAACTTGATATTTTAAACACTGATAATTTTTCTATAGAAGAAGCCACCAAGTTTTATCCCGAATACGATTGTAATCAAGCATGGTTTCCACTGGACCGATAGACGCGACAGCAGGGCATTTATCAAAAAAGTACTTCATGCATATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTNCTCCA ] [-] EMBL SM714 [ acAGATAATACCGTATAATAGAAATTACAGAACTATGTAAGTATAATTGGANTGTAAGCAATAACATCACAACNTGATA TTTAAACACTAATAATTTTTCTATAGCAGAAGCCACCGA TTTTATCCCG ATACG TTGTAATCAAGCATG ] [-] EMBL CD147669 [ TCCCGAATACGATTGTAATCAAGCATGGTTTCCACTGGACCGATAGACGCGACAGCAGGGCATTTATCAAAAAAGTACTTCATGCATATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTTGTTCTTTGCTCTGTCGA ] [-] EMBL CD155389 [ ACGCGACAGCAGGGCTTTTATCAAAAAAGTACTTCATGCATATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCC ] [-] EMBL CD124402 [ cttaCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTTCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAAGTAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTGTATCCCAAGCGCCAGGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGATCTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCGTGATAGGATGCCTGGAAATCGCCATAATGTTTCTCCGCGAGGTCGCATAGATGCTTATGGTCGATTCg ] [-] EMBL CD116324 [ gaaCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCATAAAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCAACATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTC ] [-] EMBL CD112255 [ ATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGGTCGCATAGATGCTTATGGTCGATTCCTCC ] [-] EMBL CD110786 [ ATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTCTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAACGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAGCTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATG ] [-] EMBL CD146427 [ CGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGCCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGT ] [+] EMBL CD143119 [ AAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAACGTTGGAAACTGTGTACCGAATTTTCCATAAAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTAGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGNATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGNTCGCATAGAT ] [+] EMBL CD146218 [ TATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGGTCGCCTAG ] [-] EMBL CD092295 [ CTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGGTCGCATAGATGCTTATGGTCGATTCCTCCTGCAGCACTGAGCACCATTCGTGGTGCTTTATAGTTGTGTTTGATAAAATTCTTCATATCACTGGCTTTCAAAGATTTGACATTTTCTACAGGTCCAAGAAT TGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGTATGAAGGcn ] [-] EMBL CD115842 [ TGTAAAACGAGAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGGTCGCATAGATGCTTATGGTCGATTCCTCCTGCAGCACTGAGCACCATTCGTGGTGCTTTATAGTTGTGTTTGATAAAATTCTTCATATCACTGGCTTTCAAAGATTTGACATTTTCTGCAGGTCCAAGAAT TGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACC ] [-] EMBL CD122110 [ ATAAAATTCTTCATATCACTGGCTTTCAAAGATTTGACATTTTCTACAGGTCCAAGAAT TGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTCAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACTTTCCAAAGTAGTCACCTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCC GTACCAA ] [-] EMBL CD158219 [ TCAAAGATTGNACATTTTCTACAGGTCC AGAATGTCCCCTTCCAAGAGGAGTCNCCTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGA ] [+] EMBL CD119791 [ AAT TGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGT ] [-] EMBL AI068228 [ AGTCCTTTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTATCAATTTCATCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTGTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACTTTCCAAAGTAGTCACCTTCGTCTCTGGCATATGAACCGTTCCAAATAAAGGAACATATTTGGTGGCC GAACCAATTTTCCTATGACGTATTGA GGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATC ] [+] EMBL CD133397 [ TCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGGACCGTTTCAAATAAAGGAACATATTTGGTGGCC GAACCAATCTTCCTATGACGTATTGANNGAAGC AATGGAGCTAGTCTGCGGNAAGCANATCGAAGTGCCATACCCAGCACGTAACGA ] [-] EMBL CD133517 [ CAATTTCCTCCATGTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTATAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGT ] [+] EMBL CD068076 [ ATTT CTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCCGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCAC ] [+] EMBL CD133428 [ TTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCC GAACCAATCTTCCTATGACGTATTGA GGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATCGAAGTGCCATACCCAGCACGTAACGAA] [+] EMBL CD163799 [ ACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCC GAACCAATCTTCCTATGACGT ] [-] EMBL CD146473 [ CTTGCTGTTGTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCATCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGC ] [-] EMBL CD116915 [ TTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTATAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTACTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACTTTCCAAAGTAGTCACCTTCGTCTGTGGCATATGAA ] [-] EMBL CD098311 [ ATGTGTACGCATTCAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCC GAACCAATCTTCCTATGACGTATTGA GGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATCG ] [+] EMBL CD157216 [ GTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAAGCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACTTTCCAAAGTAGTCACCTTCGTCTCTGGCATATGAACCGTTCCAAATAAAGGAACATATTTGGTGGCC GAACCAATTTTCCTATGACGTATTGA GGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATCGAAGTGCCATACCCAGCACGTAACGAA] [+] EMBL CD141065 [ TCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCCAGAACCAATCTTCCTATGACGTATTGA GGAAGCAAATGGAG ] consensusID : consensus_11071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 592 fasta sequence [AAAGGTAGGTAAGTATTTTAATAGGACCTGAGTGCAAAACTTGATCCAGAATAGCATAGGTAGCCTGTTGACTAACTTCTAAACTTTGACCAAGTCCTAGACCAATAGATAATTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCTGACCTGTTTTCCAATGTCGAGCATATTCTGACACTACACGTGGATCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTGAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATTCCAATTGGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTTTGATAACAGATGGATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCANATAGACAATTAGCCA] [+] EMBL CD065215 [AAAGGTAGGTAAGTATTTTAATAGGACCTGAGTGCAAAACTTGATCCAGAATAGCATAGGTAGCCTGTTGACTAACTTCTAAACTTTGACCAAGTCCTAGACCAATAGATAATTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCTGACCTGTTTTCCAATGTCGAGCATATTCTGACACTACACGTGGATCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTGAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATTCCAATTGGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTTTGATAACAGATGGATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCANATAGACAATTAGCCA] [+] EMBL CD179829 [ TGATCCAGAATAGCATAGGTAGCCTGTTGACTAACTTCTAAACTTTGACCAAGTCCTAGACCAATAGATAATTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCTGACCTGTTTTCCAATGTCGAGCATATTCTGACACTACACGTGGATCGTGTCCCAGTAACATGTTGATATCGTGTACGT ] consensusID : consensus_11071#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [AACACATTACGACGGGAAATAGAAACAGATATGAAAAGGATGAATAACAACTGGAAAGGATTGCCCAAGACAGGGTTGGATGGAGAATGCTGGTGAGCGGCCTATGCTCCTCGACGAGGGGTAACAGGCGTAGGTAAGTAAGTTACCTAAGGAGAGTATGCATATTTATACATAATATTCATGATTAGTCTATATATTATTCATAAGCAAATCATCTGCATCATTTAAAAACACCTGTTATGAGAG] [+] EMBL CD066919 [AACACATTACGACGGGAAATAGAAACAGATATGAAAAGGATGAATAACAACTGGAAAGGATTGCCCAAGACAGGGTTGGATGGAGAATGCTGGTGAGCGGCCTATGCTCCTCGACGAGGGGTAACAGGCGTAGGTAAGTAAGTTACCTAAGGAGAGTATGCATATTTATACATAATATTCATGATTAGTCTATATATTATTCATAAGCAAATCATCTGCATCATTTAAAAACACCTGTTATGAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 ACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 60 consensus_11071#1 ---------AAAGGTAGGTAAGTATTTTAATAGGACCTGAGTGCAAAACTTGATCCAGAA 51 consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 GGAAGAAATGAATATTGCTACGTAAACACAAGATAATACCGTATAATAGAAATTACAGAA 120 consensus_11071#1 TAGCATAGGTAGCCTGTTGACTAACTTCTAAACTTTGACCAAGTCCTAGACCAATAGATA 111 consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 CTATGTAAGTATAATTGGATTGTAAGCAATAACATCACAACTTGATATTTTAAACACTGA 180 consensus_11071#1 ATTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCTGACCTGTTTTCCAATGTCGAG 171 consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 TAATTTTTCTATAGAAGAAGCCACCAAGTTTTATCCCGAATACGATTGTAATCAAGCATG 240 consensus_11071#1 CATATTCTGACACTACACGTGGATCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCA 231 consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 GTTTCCACTGGACCGATAGACGCGACAGCAGGGCATTTATCAAAAAAGTACTTCATGCAT 300 consensus_11071#1 AGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTG 291 consensus_11071#2 -----------------------------------------------------AACACAT 7 consensus_11071#0 ATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGT 360 * * consensus_11071#1 -AGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCA-ATTGAAGTGTTATAA 349 consensus_11071#2 -TACGACGG-GAAATAGAAACAGATATGAAAAGGATGAATAACA-ACTGGAAAGG-ATTG 63 consensus_11071#0 ATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCA 420 * * * * * ** * * * * consensus_11071#1 TTGGAG-ATTGATATGATCGTTTACTAGAACCATTATCTA-GGCATCGGCCACCACGTAT 407 consensus_11071#2 CCCAAG-ACAGGGTTGGATGG-----AGAATGCTGGTGAGCGGCCTATGCTCCTCGACGA 117 consensus_11071#0 TCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGA 480 * * * * * * * consensus_11071#1 AGTGTAAT-G-GCAATCTTGGGCAGGTTTACCAGGACGATCAA--GCAGATCACAATAGA 463 consensus_11071#2 GGGGTAACAG-GCGTAGGTAAGTAAGTTACCTAAGGAGAGTAT--GCATATTTATACATA 174 consensus_11071#0 GTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAA 540 * * * ** * * ** ** * * consensus_11071#1 CT-ATTCCAATT-GGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTTTGATAAC 521 consensus_11071#2 AT-ATTCATGAT-TAGTCTAT-ATATTATTCATAAGCAAAT---CATCTGCATCATTTAA 228 consensus_11071#0 CCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTAT-CATGGTAGCAAGTAAA 599 *** * * * * * * * * *** * * consensus_11071#1 AGATGGATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCANATAG 581 consensus_11071#2 AAACACCTGTTATGAGAG------------------------------------------ 246 consensus_11071#0 GAAATGTTGGAAACTGTGTACCGAATTTTCCATAAAAAACTTGGAGGCCAGTTTACTGGC 659 * ** * consensus_11071#1 ACAATTAGCCA------------------------------------------------- 592 consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 AACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCAT 719 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 TAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGC 779 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 TACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAG 839 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 GCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGC 899 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 GAGGTCGCATAGATGCTTATGGTCGATTCCTCCTGCAGCACTGAGCACCATTCGTGGTGC 959 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 TTTATAGTTGTGTTTGATAAAATTCTTCATATCACTGGCTTTCAAAGATTTGACATTTTC 1019 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 TACAGGTCCAAGAATTGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGCATGCAGGTA 1079 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 ATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCC 1139 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 TCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAA 1199 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 TTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACG 1259 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 AGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTG 1319 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 ACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATT 1379 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 ATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGT 1439 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 ATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTC 1499 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 TGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCCGAACCAATCTTCCTATG 1559 consensus_11071#1 ------------------------------------------------------------ consensus_11071#2 ------------------------------------------------------------ consensus_11071#0 ACGTATTGAGGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATCGAAGTGCCATACCCAG 1619 consensus_11071#1 ----------- consensus_11071#2 ----------- consensus_11071#0 CACGTAACGAA 1630 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||