These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1020 fasta sequence [ATAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT-CCTGGGGGTTACG-CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT-TGGTGATTCATC-TCTGCAC-CTCGGTGAGAAATTCACCG-GTGGA-TTTACAACT-ATTAC-TCCTCCGCTTTC-TCAAATCC-CTTTGCCGC-CACC-CATGGC-TTTACC-ATCC-TTTAC-TGGCC-TCATTCCGTACCAGGATATTCCATGGAGCACACTCAGTCCAACTCTTAAGTTCGTTTTCACTTGACACAACAGCCCACACTGTGGAGCTACTACATAGTCATGCTCTCACCGTAGATTTGCACCTTACGTGATACCACATTGATAATGTCTGAAC] [+] EMBL CD121718 [ATAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGGAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGC ] [+] EMBL CD121088 [ATAGGTCAGCAATATCGGCGGTCTCTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACGAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGC ] [+] EMBL CD151832 [ TAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGCTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGG ] [+] EMBL CD151887 [ TAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTATGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGCGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCCGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGG ] [+] EMBL CD111392 [ TAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTT ] [+] EMBL CD185718 [ GAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTGCAATTATTGGAAGAAACGACTCTCTATGACAAACA ] [+] EMBL CD111203 [ AAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAG ] [+] EMBL CD111189 [ AAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAAGAGCTTTAGTTctct ] [-] EMBL BG931819 [ GTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAGAA ] [+] EMBL CD098482 [ ctgtGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCC ] [+] EMBL CD147721 [ AAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAGAT C CTTTGCTG CA C CATGG TTTAC ] [-] EMBL CD147926 [ GGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCCCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGTTTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAATCC CTTTGCCGC CACC CATGGC TTTACC ] [-] EMBL CD147331 [ ctTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAATCC CTTTGCCGC CACC CATGGC TTTACC ] [+] EMBL AI975050 [ AAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAAT ] [-] EMBL CD181907 [ GGTCTTATAACGTCCGACATACCA TACCTCCCTGNGGG TACGNCTAAAGGTATTCTGAAGANATCGTTAGGAGCTCCAGGACTCCCTCCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCGAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAATCC CTTTGCCGC CACC CATGGC TTTACC ATCC TTTAC TGGCC TCATTC ] [+] EMBL CD183936 [ CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAATCC CTTTG ] [-] EMBL CD147489 [ CCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAA ] [-] EMBL CD147810 [ TATACTTCCTGCAGCTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATCTGGTGATTCAGCGTCTGCACACTCGGTGAGAAATTCACCGCGTGGAGTTTACAACTCATTACGTCCTCCGCTTTCGTCAAATCCGCTTTGCCGCGCACCTCATGGCATTTACCTATCCGTTTACGTGGCCGTCATATCGTACCAGGATATTCCATGGAGCACACTCAGTCCAACTCTTAAGTTCGTTTTCACTTGACACAACAGCCCACACTGTGGAGCTACTACATAGTCATGCTCTCACCGTAGATTTGCACCTTACGTGATACCACATTGATAATGTCTGAAC] [-] EMBL CD165194 [ CTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAATCC CTTTGC ] consensusID : consensus_11094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1015 fasta sequence [GCAGGCCANAATTCGGCACGAGGGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATTCACCGGTGGATTTACAACTATTACTCCTCCGCTTTCTCAAATCCCTTTGCCGCCACCCATGGCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGTCCAGCTGTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGAACTACCATAGAAGCAAAGCCCCAACTGAAAAATTTGATCGGTGACGCAACACGTTTTGTCCCTACAGCTCTTAAAGTACGTAGAATTGTTCGTGATACTAGTGGTCGTCTAATCACTACAGGTGGGGGCACAAGTGTATATGGAACAGCAAAACAACCGAATGCTGTTTATGATCGTGTTGCTAAATCTGATACTACAGGAATTAATTCTGGGTCAGCTACTAGCAAAGATGATGCATATGAAGAGTTTATGCGTGAAATGGAAGGCCTAATATAAGAACACTTTTCAGACTCCATGTATATTTTTATCTTATTTTGAAATCGTCTTTCATATATTGTATATTTTAATGTGTCTTTTTTTACGCATATCTATCTGAAGCAAACATTTTTCATTGAATCCACCTTAAATCCATTGTTTACATGTCTCAAATTATGAACACGTGTTTGCATCAAAAGTTCTCGATGGATACCATTTCTTAATGTAGAAAAAAAAAAAAAAA] [+] EMBL CD082592 [GCAGGCCANAATTCGGCACGAGGGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATTCACCGGTGGATTTACAACTATTACTCCTCCGCTTTCTCAAATCCCTTTGCCGCCACCCATGGCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGTCCAGCTGTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGAACTACCATAGAAGCAAAGCCCCAACTGAAAAATTTGATCGGTGACGCAACACGTTTTGTCCCTACAGCTCTTANAGTACGTAGAATTGTTCGTGATACTAGTGGTCGTCTAATCACTACAGGTGGNGGCANCAGTGTATATG ] [-] EMBL CD076191 [ CCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGTCCAGCTGTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGAACTACCATAGAAGCAAAGCCCCAACTGAAAAATTTGATCGGTGACGCAACACGTTTTGTCCCTACAGCTCTTAAAGTACGTAGAATTGTTCGTGATACTAGTGGTCGTCTAATCACTACAGGTGGGGGCACAAGTGTATATGGAACAGCAAAACAACCGAATGCTGTTTATGATCGTGTTGCTAAATCTGATACTACAGGAATTAATTCTGGGTCAGCTACTAGCAAAGATGATGCATATGAAGAGTTTATGCGTGAAATGGAAGGCCTAATATAAGAACACTTTTCAGACTCCATGTATATTTTTATCTTATTTTGAAATCGTCTTTCATATATTGTATATTTTAATGTGTCTTTTTTTACGCATATCTATCTGAAGCAAACATTTTTCAT ] [+] EMBL CD190616 [ GTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGAACTACCATAGAAGCAAAGCCCCAACTGAAAAATTTGATCGGTGACGCAACACGTTTTGTCCCTACAGCTCTTAAAGTACGTAGAATTGTTCGTGATACTAGTGGTCGTCTAATCACTACAGGTGGGGGCACAAGTGTATATGGAACAGCAAAACAACCGAATGCTGTTTATGATCGTGTTGCTAAATCTGATACTACAGGAATTAATTCTGGGTCAGCTACTAGCAAAGATGATGCATATGAAGAGTTTATGCGTGAAATGGAA ] [-] EMBL AI395556 [ tTACTAGCAAAGATGATGCATATGAAGAGTTTATGCGTGAAATGGAAGGCCTAATATAAGAACACTTTTCAGACTCCATGTATATTTTTATCTTATTTTGAAATCGTCTTTCATATATTGTATATTTTAATGTGTCTTTTTTTACGCATATCTATCTGAAGCAAACATTTTTCATTGAATCCACCTTAAATCCATTGTTTACATGTCTCAAATTATGAACACGTGTTTGCATCAAAAGTTCTCGATGGATACCATTTCTTAATGTAGAAAAAAAAAAAAAAA] consensusID : consensus_11094#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 695 fasta sequence [TCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGCCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGGTGAGCATTTATTCTTACTTTATGTCCACAGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCTCCTGGGGGTTACGCTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCANACCACCTGGACCACCTCCAGGAACACCTNCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACANAGCAACGCANAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCANGAAGAACTAATTGGTGATTCATCTCTGCACCTCGTTGAGAAATTCACC] [+] EMBL CD092185 [TCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGCCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGGTGAGCATTTATTCTTACTTTATGTCCACAGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCTCCTGGGGGTTACGCTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCANACCACCTGGACCACCTCCAGGAACACCTNCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACANAGCAACGCANAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCANGAAGAACTAATTGGTGATTCATCTCTGCACCTCGTTGAGAAATTCACC] [-] EMBL CD098405 [ CCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGGTGAGCATTTATTCTTACTTTATGTCCACAGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCTCCTGGGGGTTACGCTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCA ] [+] EMBL CD190551 [ TATTACGGAGAGCATTTATTCTTACTTTATGTCCACAGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACATTCACAAATGGGTCTTATAACGTCCGACATACCATTACCTCCTGGGGGTTACGCTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAG ] consensusID : consensus_11094#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 440 fasta sequence [ACAGNATCCCCGACCACTTNGAAACCGTAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATT-CACCGGTGGATTTACAACTATTACTCCTC-CGCTTTCTCAAATCCCT-TTGCCGCCAC-CCAT-G-GCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGTCCAGCTGTATCGAGCATTCCAACAAATCAACCAAATCCAAGTGGTCGTCTTACGGTTTCAAGTGGTCGGGT] [+] EMBL CD085398 [ACAGNATCCCCGACCACTTNGAAACCGTAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATT CACCGGTGGATTTACAACTATTACTCCTC CGCTTTCTCAAATCCCT TTGCCGCCAC CCAT G GCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGTCCAGCTGTATCGAGCATTCCAACAAATCAACCAAATCCAAGTGGTCGTCTTACGGTTTCAAGTGGTCGGGT] [+] EMBL CD085417 [ AACCGTAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATT CACCGGTGGATTTACAACTATTACTCCTC CGCTTTCTCAAATCCCT TTGCCGCCAC CCAT G GCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGCCCAGCTGTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGTCGTCTTACGGTTTCAAGTGGTCGGGT] [-] EMBL CD147706 [ AAATCCGGTTCGCTGATGCAGATCTTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTGTGCACCTCGGTGAGAAATTGCACCGGTGGATTTACAACTATTACTCCTCACGCTTTCTCAAATCCCTATTGCCGCCACACCATAGCGCTTTACCAT ] [-] EMBL CD147488 [ AGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATT CACCGGTGGATTTACAACTATTACTCCTC CGCTTTCTCAAATCCCT TTGCCGCCAC CCAT G GCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGA ] consensusID : consensus_11094#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [TTTTTTTTTTTTTTTTGATCATATACAGACATATATTTGAATGTTTGTGTATGAGATGAACTAACTGTACTTCAAATAAACTGATTTGATAAATCTCACTGAGCAGACTATAATTCTACATTAAGAAATGGTATCCATCGAGAACTTTTGATGCAAACACGTGTTCATAATTTGAGACATGTAAACAATGGATTTAAGGTGGATTCAATGAAAAATGTTTGCTTCAGATAGATATGCGTAAAAAAAGACACATTAAAATATACAATATATGAAAGACATTTCAAAATAAGATAAAAATATACATGGAGTCTGAAAAGTGTTC] [+] EMBL AI395705 [TTTTTTTTTTTTTTTTGATCATATACAGACATATATTTGAATGTTTGTGTATGAGATGAACTAACTGTACTTCAAATAAACTGATTTGATAAATCTCACTGAGCAGACTATAATTCTACATTAAGAAATGGTATCCATCGAGAACTTTTGATGCAAACACGTGTTCATAATTTGAGACATGTAAACAATGGATTTAAGGTGGATTCAATGAAAAATGTTTGCTTCAGATAGATATGCGTAAAAAAAGACACATTAAAATATACAATATATGAAAGACATTTCAAAATAAGATAAAAATATACATGGAGTCTGAAAAGTGTTC] consensusID : consensus_11094#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [TTNNTTTTTTTTTTTAAAATATACAATATATGAAAGACGATTTCAAAATAAGATAAAAATATACATGGAGTCTGAAAAGTGTTCTTATATTAGGCCTTCCATTTCACGCATAAACTCTTCATATGCATCATCTTTGCTAGTAGCTGACCCAGAATTAATTCCTGTAGTATCAGATTTAGCAACACGATCATAAACAGCATTCGGTTGTTTTGCTGTTCCATATACACTTGTGCCCCCACCTGTAGTGATTAGACGACCACTAGTATCACGAACAATCTACGTACTTTAAGAGCTGTAN] [+] EMBL AI395615 [TTNNTTTTTTTTTTTAAAATATACAATATATGAAAGACGATTTCAAAATAAGATAAAAATATACATGGAGTCTGAAAAGTGTTCTTATATTAGGCCTTCCATTTCACGCATAAACTCTTCATATGCATCATCTTTGCTAGTAGCTGACCCAGAATTAATTCCTGTAGTATCAGATTTAGCAACACGATCATAAACAGCATTCGGTTGTTTTGCTGTTCCATATACACTTGTGCCCCCACCTGTAGTGATTAGACGACCACTAGTATCACGAACAATCTACGTACTTTAAGAGCTGTAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11094#0 ATAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGT 60 consensus_11094#2 ------------------------------------------------------------ consensus_11094#1 ---------------------------GCAGGCCANAATTCGGCACGAGGGAAATCGTTA 33 consensus_11094#3 ------------------------------------------------------------ consensus_11094#5 ------------------------------------------------------------ consensus_11094#4 ------------------------------------------------------------ consensus_11094#0 CGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAA 120 consensus_11094#2 --------------------------------------------------TCCTTTACTG 10 consensus_11094#1 GGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCT 93 consensus_11094#3 ------------------------------------------------------------ consensus_11094#5 ------------------------------------------------------------ consensus_11094#4 ------------------------------------------------------------ consensus_11094#0 GAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCG 180 consensus_11094#2 GCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTT-------- 62 consensus_11094#1 CCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGAT------ 147 consensus_11094#3 ---ACAGNATC-CCCGACCACTTNGAAACCGTA-----AGACAATTCTGTTGAT------ 45 consensus_11094#5 ------------------------------------------------------------ consensus_11094#4 ------------------------------------------------------------ consensus_11094#0 GTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAA-CA 239 consensus_11094#2 -CACTTA---CCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAA-CA 117 consensus_11094#1 ---AACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATC-CTATGCCAGAGCA 203 consensus_11094#3 ---AACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATC-CTATGCCAGAGCA 101 consensus_11094#5 ---------------------------------------TTNNTTTTTTTTTTTAAA--A 19 consensus_11094#4 ---------------------------------------TTTTTTTTTTTTTTTTGATCA 21 * * * * * consensus_11094#0 AGAATA-CGATCCCAGTGTTCAAGCTC---AACTCAGTGAAAGGGTCATTCAGGAAAAAC 295 consensus_11094#2 AGAATA-CGATCCCAGTGTTCAAGCTC---AACTCAGTGAAAGGGCCATTCAGGAAAAAC 173 consensus_11094#1 AGAAGA-ACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATTCACCGGTGGA---- 258 consensus_11094#3 AGAAGA-ACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATTCACCGGTGGA---- 156 consensus_11094#5 TATACA-ATATATGAAAGA-CGATTTCA--AAATAAGATAAAAATATACATGGAGT---- 71 consensus_11094#4 TATACAGACATATATTTGAATGTTTGTGTATGAGATGAACTAACTGTACTTCAAAT---- 77 * * * * * * consensus_11094#0 GCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAG 355 consensus_11094#2 GCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAG 233 consensus_11094#1 -TTTACAACTATT---ACTCCTCCGCTTTCTCAAATCCCTTTGCCGCCACCCATGGCTTT 314 consensus_11094#3 -TTTACAACTATT---ACTCCTCCGCTTTCTCAAATCCCTTTGCCGCCACCCATGGCTTT 212 consensus_11094#5 -CTGAAAAGTGTTCTTA-TATTAGGCCTTCC--ATTTCACGCATAAAC-TCTTCATATGC 126 consensus_11094#4 -----AAACTGATT----TGATAAATCTCACTGAGCAGAC-TATAATTCTACATTAAGAA 127 * * * * consensus_11094#0 AATATGCCA-ACCGGCTTCAAGCGGCTCGTCAAGACTA---TGACAAAAGACGGCATGAA 411 consensus_11094#2 AATATGCCA-ACCGGCTTCAAGCGGCTCGTCAAGACTA---TGACAAAAGACGGCATGAA 289 consensus_11094#1 ACCATCCTTTACTGGCCTCA-----TTCGTCCAGGATT---TCCAGGAGCACCTCAGCCA 366 consensus_11094#3 ACCATCCTTTACTGGCCTCA-----TTCGTCCAGGATT---TCCAGGAGCACCTCAGCCA 264 consensus_11094#5 ATCATCTTT-GCTAGTAGC-------TGACCCAGAATTAATTCCTGTAGTATCAGATTTA 178 consensus_11094#4 ATGGTATCCATCGAGAACTT-----TTGATGCAAACACGTGTTC-ATAATTTGAGACATG 181 * * * * * * * * * consensus_11094#0 ATGATGCTTTATTACG-------------------------------AACAAGTAAAGTT 440 consensus_11094#2 ATGATGCTTTATTACGGTGAGCATTTATTCTTACTTTATGTCCACAGAACAAGTAAAGTT 349 consensus_11094#1 ACTCTAAGTCGTTTCA-------------CTTACCAACGCCCCACTGGAGCTATACTATC 413 consensus_11094#3 ACTCTAAGTCGTTTCA-------------CTTACCAACGCCCCACTGGAGCTATACTATC 311 consensus_11094#5 GCAACACG--ATCATA------------------------------AACAGCATTCGGTT 206 consensus_11094#4 TAAACAATGGATTTAAG---------------------GTGGATTCAATGAAAAATGTTT 220 * * consensus_11094#0 AGCTGAA---AGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAAT 497 consensus_11094#2 AGCTGAA---AGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAAT 406 consensus_11094#1 AGCTCCACCTAGTTTGCACCTTCGTGA---TCCACT--TGATAATGCTGAACTTGTAAGT 468 consensus_11094#3 AGCTCCACCTAGTTTGCACCTTCGTGA---TCCACT--TGATAATGCTGAACTTGTAAGT 366 consensus_11094#5 GTTTTGCTGTTCCATATACACTTGTGC--CCCCAC-----------CTGTAGTGATTAGA 253 consensus_11094#4 GCTTCAG----ATAGATATGCGTAAAAAAAGACACATTAAAATATACAATATATGAAAGA 276 * * * * * * * consensus_11094#0 GGGTC--TTATAACG-----TCCGACATACCA-TTACCTCCTGGGGGTTACGCTAAAGGT 549 consensus_11094#2 GGGTC--TTATAACG-----TCCGACATACCA-TTACCTCCTGGGGGTTACGCTAAAGGT 458 consensus_11094#1 GGTCCAGCTGTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGAACTACCATAGAA 528 consensus_11094#3 GGTCCAGCTGTATCGAGCATTCCAACAAATCAACCAAATCCAAGTGGTCGTCTTACGGTT 426 consensus_11094#5 CGACCACTAGTATCA------CGAACAATCTA--CGTACTTTAAGAGCTGTAN------- 298 consensus_11094#4 CATTTCAAAATAAGA-------TAAAAATATACATGGAGTCTGAAAAGTGTTC------- 322 ** * * * consensus_11094#0 ATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGC 609 consensus_11094#2 ATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGC 518 consensus_11094#1 GCAAAGCCCCAACTGAAAAATTTGATCGGTGACGCAACACGTTTTGTCCCTACAGCTCTT 588 consensus_11094#3 TCAAGTGGTCGGGT---------------------------------------------- 440 consensus_11094#5 ------------------------------------------------------------ consensus_11094#4 ------------------------------------------------------------ consensus_11094#0 AAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGAC 669 consensus_11094#2 ANACCACCTGGACCACCTCCAGGAACACCTNCTGAATTGTCAGATAGCGAAGAAGAAGAC 578 consensus_11094#1 AAAGTACGTAGAATTGTTCGTGATA---CTAGTGGTCGTCTAATCACTACAGGTGGGGGC 645 consensus_11094#3 ------------------------------------------------------------ consensus_11094#5 ------------------------------------------------------------ consensus_11094#4 ------------------------------------------------------------ consensus_11094#0 AATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATG 729 consensus_11094#2 AATTCTGTTGATAACACGACANAGCAACGCANAATCCGGTTCGCTGATGCAGATCCTATG 638 consensus_11094#1 ACAAGTGTATATGGAACAGCAAAACAAC--CGAATGCTGTTTATGATCGTGTTGCTAAAT 703 consensus_11094#3 ------------------------------------------------------------ consensus_11094#5 ------------------------------------------------------------ consensus_11094#4 ------------------------------------------------------------ consensus_11094#0 CCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATTCACCGGT 789 consensus_11094#2 CCAGAGCANGAAGAACTAATTGGTGATTCATCTCTGCACCTCGTTGAGAAATTCACC--- 695 consensus_11094#1 CTGATACTACAGGAATTAATTCTGGGTCAGCTACTAGCAAAGATGATGCATATGAAGAGT 763 consensus_11094#3 ------------------------------------------------------------ consensus_11094#5 ------------------------------------------------------------ consensus_11094#4 ------------------------------------------------------------ consensus_11094#0 GGATTTACAACTATTACTCCTCCGCTTTCTCAAATCCCTTTGCCGCCACCCATGGCTTTA 849 consensus_11094#2 ------------------------------------------------------------ consensus_11094#1 TTATGCGTGAAATGGAAGGCCTAATATAAGAACACTTTTCAGACTCCATGTATATTTTTA 823 consensus_11094#3 ------------------------------------------------------------ consensus_11094#5 ------------------------------------------------------------ consensus_11094#4 ------------------------------------------------------------ consensus_11094#0 CCATCCTTTACTGGCCTCATTCCGTACCAGGATATTCCATGGAGCACACTCAGTCCAACT 909 consensus_11094#2 ------------------------------------------------------------ consensus_11094#1 TCTTATTTTGAAATCGTCTTTCATATATTGTATATTTTAATGTGTCTTTTTTTACGCATA 883 consensus_11094#3 ------------------------------------------------------------ consensus_11094#5 ------------------------------------------------------------ consensus_11094#4 ------------------------------------------------------------ consensus_11094#0 CTTAAGTTCGTTTTCACTTGACACAACAGCCCACACTGTGGAGCTACTACATAGTCATGC 969 consensus_11094#2 ------------------------------------------------------------ consensus_11094#1 TCTATCTGAAGCAAACATTTTTCATTGAATCCACCTTAAATCCATTGTTTACATGTCTCA 943 consensus_11094#3 ------------------------------------------------------------ consensus_11094#5 ------------------------------------------------------------ consensus_11094#4 ------------------------------------------------------------ consensus_11094#0 TCTCACCGTAGATTTGCACCTTACGTGATACCACATTGATAATGTCTGAAC--------- 1020 consensus_11094#2 ------------------------------------------------------------ consensus_11094#1 AATTATGAACACGTGTTTGCATCAAAAGTTCTCGATGGATACCATTTCTTAATGTAGAAA 1003 consensus_11094#3 ------------------------------------------------------------ consensus_11094#5 ------------------------------------------------------------ consensus_11094#4 ------------------------------------------------------------ consensus_11094#0 ------------ consensus_11094#2 ------------ consensus_11094#1 AAAAAAAAAAAA 1015 consensus_11094#3 ------------ consensus_11094#5 ------------ consensus_11094#4 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||