|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 31 consensus length = 442 fasta sequence
[GGGATTCGATTTAATAAACAGGCACGTTCTCGTGTGGACCAGTTGCAGATCACCAGCTGCTCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG-GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT-CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC-TTTACCACCTTTACCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTGCAGACCGACACGAGACGAGGAAGCCAG]
[+] EMBL CD115947 [GGGATTCGATTTAATAAACAGGCACGTTCTCGTGTGGACCAGTTGCAGATCACCAGCTGCTCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCA ]
[+] EMBL CD115637 [ GTGTGGACCAGTTGCAGATCACCAGCTGCTCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTGGGTGGGGGGCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCTAAACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCC ATCC TTTACCA ]
[-] EMBL CD148166 [ TGTGGACCAGTTGCAGATCACCAGCTGCTCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGT ]
[-] EMBL CD154526 [ ACCAGCTGCTCACATGCTAGTGAATTAACCACCANAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGCTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGT ]
[+] EMBL BG931861 [ gTCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGA ]
[+] EMBL CD162948 [ TGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTGCAGACCG ]
[-] EMBL CD163344 [ GAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTCTACCACGACCAGACATGATTCACAAAGATAGGTAA ]
[+] EMBL CD097481 [ GCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACC ]
[-] EMBL CD148058 [ CGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCGCGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCATCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCCACGGGCCACCTCAATCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTGCAGACCGACACG ]
[+] EMBL CD112426 [ CCTCTTGTGCATGTTCCGTGTAGGTAACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCC ]
[-] EMBL CD153702 [ CCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGTACACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTGCAGACCGACACGAGACGAGGAAGCCAG]
[-] EMBL CD153718 [ CCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGACAGGCAAGCTGACTTGCAGACCGA ]
[-] EMBL CD153716 [ CCGTGTAGGTAACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGA ]
[-] EMBL CD153707 [ CCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGa ]
[-] EMBL CD153693 [ CCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGA ]
[-] EMBL CD125691 [ CGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGTTCCTCCTTTACCCAATCC TTTACCCCCTTTACCACGTCCAGACATGATTCACAAAGATAGGTGAGCTGACTTG ]
[+] EMBL CD148207 [ TGTAGGAGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTGCAGACCGACAC ]
[+] EMBL CD125671 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGAGCGGACGTGATTCATCAAGACAGGCGAGCTGACTTGCAGACCGACA ]
[+] EMBL CD147988 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACTAAGATAGGTAAGCTGACTTGCAGACCGACA ]
[+] EMBL CD125656 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTT CCCAATCC TTTAC ]
[+] EMBL CD125602 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTT ]
[+] EMBL CD125695 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTT ]
[+] EMBL CD125598 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTGGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTT ]
[+] EMBL CD125639 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACTTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTT ]
[-] EMBL CD125659 [ GTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTA ]
[+] EMBL CD125665 [ cGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTT ]
[-] EMBL CD125676 [ GTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCCCCTTTACCCAATCC TTTA ]
[-] EMBL CD125699 [ GTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACGGCGCCTCTACGAGTCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTg ]
[-] EMBL CD125601 [ GTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTA ]
[-] EMBL CD125651 [ GTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTA ]
[-] EMBL CD093233 [ AGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGACTCACAAAGATAGGCAAGCTGACTTGCAGACCGACACGAG ]
consensusID : consensus_11096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence
[TTGAATAACCACCGAAACCGTACAAAGTTACGACCTTGGCGTTTCAAAGCGGTACAACAACGTCCATAGCTGTCACTGTCTTCCTCGTGGCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAGACACCTTCAGTACACCACGAGGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGTCACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCCTGGACCACCTCTATCACGACCAGACATGATTCACAAAGATAGGTAAGCTGAATTGACAGATCACCAGCTGCT]
[-] EMBL CD163130 [TTGAATAACCACCGAAACCGTACAAAGTTACGACCTTGGCGTTTCAAAGCGGTACAACAACGTCCATAGCTGTCACTGTCTTCCTCGTGGCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAGACACCTTCAGTACACCACGAGGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGTCACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCCTGGACCACCTCTATCACGACCAGACATGATTCACAAAGATAGGTAAGCTGAATTGACAGATCACCAGCTGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11096#0 GGGATTCGATTTAATAAACAGGCACGTTCTCGTGTGGACCAGTTGCAGATCACCAGCTGC 60
consensus_11096#1 ------------------------------------------------------------
consensus_11096#0 TCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGT-ACGACCTTGGCGTTTCAAAG 119
consensus_11096#1 -----------TTGAATAACCACCGAAACCGTACAAAGTTACGACCTTGGCGTTTCAAAG 49
* * *********************** ********************
consensus_11096#0 CG-TACA-CAACGTCCATAGCTGTCACTGTCTTCCTCTTGGCATGTTCCGTGTAGGTGAC 177
consensus_11096#1 CGGTACAACAACGTCCATAGCTGTCACTGTCTTCCTCGTGGCATGTTCCGTGTAGGTGAC 109
** **** ***************************** **********************
consensus_11096#0 TGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAG-TCTCCTCGTAGA 236
consensus_11096#1 TGCATCACGGATCACGTTCTCCAGAGACACCTTCAGTACACCACGAGGTCTCCTCGTAGA 169
************************* ********************* ************
consensus_11096#0 TCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGG 296
consensus_11096#1 TCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGG 229
************************************************************
consensus_11096#0 TGATACCCTGGATGTTGTCACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCA 356
consensus_11096#1 TGATACCCTGGATGTTGTCACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCA 289
************************************************************
consensus_11096#0 ATCCTTTACCACCTTTACCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTG- 415
consensus_11096#1 ATCCTGGACCACCTCTATCACGACCAGACATGATTCACAAAGATAGGTAAGCTGAATTGA 349
***** ******* ** ************************************* ***
consensus_11096#0 CAGACCGACACGAGACGAGGAAGCCAG 442
consensus_11096#1 CAGATCACCAGCTGCT----------- 365
**** * ** *
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||