These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1017 fasta sequence [CGTGGCAGTGATATAGTGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAATAGCTCCCAACGGTATCGGGTTGTTGGTGGATCATATGGGTCGTTGCACGGGGGAAGCGTATGTCCAATTCACATCTTCTGAAAGTCTAGCTCGGGCAAAGGAGAAACATATGGAGAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT-CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG-AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTCGATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTCCTCAACAATATGAATATGATGATCCCATATATGCGGAAGATGTAGGTTGCAATTCAGGTTCAAGTAGACCAGATTTTAATCAATCATAT] [+] EMBL CD197628 [CGTGGCAGTGATATAGTGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAATAGCTCCCAACGGTATCGGGTTGTTGGTGGATCATATGGGTCGTTGCACGGGGGAAGCGTATGTCCAATTCACATCTTCTGAAAGTCTAGCTCGGGCAAAGGAGAAACATATGGAGAAGATAGGGCACAGATACATTGAAATATTTGAAAGTACAATGATGGAGGTCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCCCCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAG ] [-] EMBL CD197830 [ ATGGGTCGTTGCACGGGGGAAGCGTATGTCCAATTCACATCTTCTGAAAGTCTAGCTCGGGCAAAGGAGAAACATATGGAGAAGATAGGGCACAGATACATTGAAATATTTGAAAGTACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTA ] [+] EMBL CD156724 [ GTATGTCCAATTCACATCTTCTGAAAGTCTAGCTCGGGCAAAGGAGAAACATATGGAGAAGATAGGGCACAGATACATTGAAATATTTGAAAGTACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGTAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTTCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGG ] [+] EMBL CD143337 [ GAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCATCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGGAGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCNGTACATCGAACTTTTNCTAGCATCCACCCCTAAGGGAATTTCTNCTTCATCTCGCATAAAC ACAGCGCACCAGTTTCTA ] [+] EMBL CD143417 [ GAAGATAGGGCACAGATTCATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCATCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGACCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCANAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGCCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAATACAGATCGTG AAAAATTGGACCTCGTTACATCGAACTTTTCCTAGCATCCACCCCTAAGGGAATTTCTCCTTTATCTCGCATAAAC ACAGCGCAACAGTTTCTA ] [+] EMBL CD143281 [ GAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGA ] [+] EMBL CD143316 [ GAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTCTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCATCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGTGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTAC ACCAGTCAACATTCGGATGCGATTCAATGCTGCTAAC ] [+] EMBL CD143285 [ GAAGATAGGGCACAGATTCATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCATCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTT ] [+] EMBL CD143296 [ GAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCATCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAA GATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCANAGTTCGACTGGGCATTCTGT ] [+] EMBL CD153316 [ CATGACCATACAGTGCCTAATGGAAATAAATCAAAGCCGTAGTTCGTGTACGAGGACCAATGTTTGGTCGAGGCAGTCGAGATGGTCATCCTGATGGCGCGGCGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTTCGTTTAGACCAAATGGGTCAGGCCCAAACAGAGGTCCAGATCCTGTAAGATATG ] [+] EMBL CD095838 [ GGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACANCAGCGCACCGGTTTCTA ] [+] EMBL CD095955 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAAGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGGTCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGAATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTA ] [+] EMBL CD095969 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTA ] [+] EMBL CD095883 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATCGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATANACAACAGCGCACCAGTTTCTA ] [+] EMBL CD095891 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATACACAACAGCGCACCAGTTTCTA ] [-] EMBL CD146826 [ CTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAG ] [-] EMBL CD095934 [ CTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATA CGCACCAGTTTCTAG ] [-] EMBL CD112021 [ ACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTC ] [-] EMBL CD197495 [ TTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTCGATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTCCTCAACAATATGAATATGATGATCCCATAT ] [-] EMBL CD112515 [ CCAGTTTCTAGTCGTTGATCTCCTCCTGTCCACAATAGTAGAGCCCATCAAGGATCACAATACGCTAACTTTGCTCCTCAACAATATGAATATGATGATATAAATTATGCGGAAGATGTAGGTTGCAATTCAGGTTCAAGTAGACCAGATTTTAATCAATCATAT] consensusID : consensus_11105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 835 fasta sequence [TGCACGGGGCGAAGCGCTATGTCCAAATCACATCTTCTGAAAGTCTAGCTCGGGCCAAGGAGAAACATATGGAGAAGATAGGGCCCAGATACTTTGAAATATTTGAAAGTACGATGCATCGAGGCCAACCAGTGAACCTTCCGCCGGCCAATGGCAATTCATCCAAGCCGTAGTTCCGGGTCGAGGACCCATGTCGGGGCGAGGCAGTCGTGAAGGGTCATCACTGCTGGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCAAGTTGCCTTCATACTTCCTAGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAGGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATANACAACAGCGCACCAGTTTCTA] [+] EMBL CD197734 [TGCACGGGGCGAAGCGCTATGTCCAAATCACATCTTCTGAAAGTCTAGCTCGGGCCAAGGAGAAACATATGGAGAAGATAGGGCCCAGATACTTTGAAATATTTGAAAGTACGATGCATCGAGGCCAACCAGTGAACCTTCCGCCGGCCAATGGCAATTCATCCAAGCCGTAGTTCCGGGTCGAGGACCCATGTCGGGGCGAGGCAGTCGTGAAGGGTCATCACTGCTGGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTC ] [+] EMBL CD095898 [ GGTCGAGGCAGTCGTG ATGGTCATC CTGAT GGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCAAGTTGCCTTCATACTTCCTAGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAGGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTTAAGGAAATTCTCCTTCATCTCGCATANACAACAGCGCACCAGTTTCTA] [+] EMBL CD095773 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCAAGTTGCCTTCATACTTCCTAGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAGGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATANACAACAGCGCACCAGTTTCTA] [+] EMBL CD096080 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCAAGTTGCCTTCATACTTCCTAGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAGGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGNGATTTCTCCTTCATCTCGCATAAACAACAGCGC ] [-] EMBL CD155563 [ CCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTCTCTCCTTTACAACCAGTCAACATTCGGATGC ] [-] EMBL CD156643 [ TTCTCCTCCTAGAGGGTTCGAAGGACCTTCTCCCTCAAAAGGATATAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGG ] [-] EMBL CD071723 [ GGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCANAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGTAAGTTGCCTTCATACTTCCTAGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAG ] consensusID : consensus_11105#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 411 fasta sequence [ATGCACCTCCGTTTAGTCCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTCGATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTCCTCAAC] [-] EMBL CD197822 [ATGCACCTCCGTTTAGTCCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTCGATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTCCTCAAC] [-] EMBL CD198079 [ taaaTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACGTCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCA ] [+] EMBL CD197918 [ tgtcgtcAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAG ] [-] EMBL CD182670 [ AAGATCGTGAAAAAATTGGGCCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTCGATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACG ] [-] EMBL CD182677 [ AAGATCGTGAAAAAACTGGGCCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTA ] consensusID : consensus_11105#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [GAGCCAATATTCGGCACGAGGAATACGCTAACTTTGCTCCTCAACAATATGAATATGATGATATAAATTATGCGGAAGATGTAGGTTGCAATTCAGGTTCAAGTAGACCAGATTTTAATCAGTCATATGACGGTTTTCACAACGGCACAAGTGTAAGGGGACCAATTGGGCATTCAGGAGAGGGTTATTCAGACTACAGATATCGTCATGGGAATCACTACTGAACATGAGGTATTATTTTATGTATACTTTACAATTACAAAAAAATAA] [+] EMBL CD081733 [GAGCCAATATTCGGCACGAGGAATACGCTAACTTTGCTCCTCAACAATATGAATATGATGATATAAATTATGCGGAAGATGTAGGTTGCAATTCAGGTTCAAGTAGACCAGATTTTAATCAGTCATATGACGGTTTTCACAACGGCACAAGTGTAAGGGGACCAATTGGGCATTCAGGAGAGGGTTATTCAGACTACAGATATCGTCATGGGAATCACTACTGAACATGAGGTATTATTTTATGTATACTTTACAATTACAAAAAAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11105#1 ------------------------------------------------------------ consensus_11105#2 ------------------------------------------------------------ consensus_11105#0 CGTGGCAGTGATATAGTGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTC 60 consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 ---------------------------------------------------------TGC 3 consensus_11105#2 ------------------------------------------------------------ consensus_11105#0 CAGTTCCTGGAAATAGCTCCCAACGGTATCGGGTTGTTGGTGGATCATATGGGTCGTTGC 120 consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 ACGGGGCGAAGCGCTATGTCCAAATCACATCTTCTGAAAGTCTAGCTCGGGCCAAGGAGA 63 consensus_11105#2 ------------------------------------------------------------ consensus_11105#0 ACGGGG-GAAGCG-TATGTCCAATTCACATCTTCTGAAAGTCTAGCTCGGGCAAAGGAGA 178 consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 AACATATGGAGAAGATAGGGCCCAGATACTTTGAAATATTTGAAAGTACGATGCATCGAG 123 consensus_11105#2 ------------------------------------------------------------ consensus_11105#0 AACATATGGAGAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATG-ATGGAG 237 consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 GCCAACCAGTGAACCTTCCGCCGGCCAATGGCAATTCATCCAAGCCGTAGTTCCGGGTCG 183 consensus_11105#2 ------------------------------------------------------------ consensus_11105#0 GCCAACATG---ACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTC-GGGTCG 293 consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 AGGACCCATGTCGGGGCGAGGCAGTCGTGAAGGGTCATCACTGCTGGGTGCGGGGCATCA 243 consensus_11105#2 ------------------------------------------------------------ consensus_11105#0 AGGACCAATGTTTGGTCGAGGCAGTCGTGATGG-TCATCCTGAT--GGTGCGGGGCATCA 350 consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 TGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAA 303 consensus_11105#2 ------------------------------------------------------------ consensus_11105#0 TGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAA 410 consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 CAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACA 363 consensus_11105#2 ------------------------------------------------------------ consensus_11105#0 CAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACA 470 consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 CCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAA 423 consensus_11105#2 --------------------------------------------------ATGCACCTCC 10 consensus_11105#0 CCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAA 530 consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 TTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGT 483 consensus_11105#2 GTTTAGT---CCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGT 67 consensus_11105#0 TTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGT 590 consensus_11105#3 ---------------------------------------------GAGCCAATATTCGGC 15 ** **** * consensus_11105#1 TCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCC 543 consensus_11105#2 TCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCC 127 consensus_11105#0 TCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCC 650 consensus_11105#3 ACGAGGAATACGCTAACTTTGCTCCTCAAC-AATATGAATAT-GATGATATAAATTATGC 73 ** * * * * ** * *** **** ** * **** *** * * ** * * consensus_11105#1 TTTACAACCAGTCAACA-TTCGGATGCGATTCAATGCTGCAAGTTGCCTTCATACTTCCT 602 consensus_11105#2 TTTACAACCAGTCAACA-TTCGGATGCGATTCAATGCTGC-------------------- 166 consensus_11105#0 TTTACAACCAGTCAACA-TTCGGATGCGATTCAATGCTGC-------------------- 689 consensus_11105#3 GGAAGATGTAGGTTGCAATTCAGGTTCAAGTAGACCAGATT------------------- 114 * * ** ** *** * * * * * * consensus_11105#1 AGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAGGC 662 consensus_11105#2 ------------------------------------------------------------ consensus_11105#0 ------------------------------------------------------------ consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 TAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGC 722 consensus_11105#2 TAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGC 226 consensus_11105#0 TAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGC 749 consensus_11105#3 ---TTAATCAGTCATATGACGGTTTTCACAACGGCACAAGTGTAAGGGGACCAATTGGGC 171 * * * * ** * ** * * * * ** *** consensus_11105#1 AATGAAGAAAGA-TCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCA 781 consensus_11105#2 AATGAAGAAAGA-TCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCA 285 consensus_11105#0 AATGAAGAAAGA-TCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCA 808 consensus_11105#3 ATTCAGGAGAGGGTTATTCAGACTACAGATATCGTCATGGGAATCACTACTGAACATGAG 231 * * * ** ** * * * * ** **** * * * * ** * *** consensus_11105#1 CCCCTAAGGGAATTTCTCCTTCATCTCGCATANACAACAGCGCACCAGTTTCTA------ 835 consensus_11105#2 CCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTC 345 consensus_11105#0 CCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTC 868 consensus_11105#3 GTATTA------TTTTATGTATACTTTACAATTACAAAAAAATAA--------------- 270 ** *** * * * ** **** * * consensus_11105#1 ------------------------------------------------------------ consensus_11105#2 GATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTC 405 consensus_11105#0 GATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTC 928 consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 ------------------------------------------------------------ consensus_11105#2 CTCAAC------------------------------------------------------ 411 consensus_11105#0 CTCAACAATATGAATATGATGATCCCATATATGCGGAAGATGTAGGTTGCAATTCAGGTT 988 consensus_11105#3 ------------------------------------------------------------ consensus_11105#1 ----------------------------- consensus_11105#2 ----------------------------- consensus_11105#0 CAAGTAGACCAGATTTTAATCAATCATAT 1017 consensus_11105#3 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||