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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 25 consensus length = 1092 fasta sequence
[AAACATCGCAGTCAGTATTCTTCAAAGAAACAGTATAATCAATGAAAAGTCACATACATGTTGAACACTCCAAAGTGTCCACAAAGTAATC-AAAAAAGAGAAACAAGTACTCAACAGAAGAAAAATGTAACAAAACAAAAGGAACAAGGTTTCTGATCACAATTCTTCCACACTGGAACCAC-AAAGGGCAACACGTCCATGCCCATCTATTTATGCATACTGTATGTGA--GTGTGTGTGTATGTGTACGTGTTTGTGTCCATATA-TAATTGCATGAATGTATGTGTGGATGCATGCATTAACAGCCTATGGTGGTACAGATGGATAGTTGAATAGTCAGATATGCACGAATTTATTTACAAACACATAGGAACTGGATACAGCAAACT-ATATACATACACAGTAAGATAGATAAATAGAT--AGAGAGAGA----GAGAGAACGAC-GCGTACATTCATACACAAGTCTATAAGACTCCTCATTCTCCTCA-GTCAATGCACTGTTCAACAAATTCCAATAAACGACGACC-GTAGAATTCCGGTTTCACAGAGCCACCATCAGCACCATGTTTCACTGTTTTGTAAGTTTGCGCT-GTAC-GTTTAC-GCATCCCATAACGAGTTA-GTATGTCGATAATAGCCACAAAATAAATCAGTGGATGAGGAGAATCAATTGAACTTTTGATTCCATAATGTTCTAAAGTAGGATGCAATTCACCTGAGAATAATTGAGGTAGACATTCTGCACCAGGTGGACTATCGGGTGGGGTCAATTCACTTGTAGGGACTTGTGTATTATTCTCTGGTATACTGATCCCGTCCTCCTCTTCATCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGCAGACACCATCCTATCGTCGAAGCCCCGACTGTTAGGTTCCAACACACCACTATTACTACCACCACCACCTCCACCAACACCCGCACCCACACA]
[-] EMBL CD161595 [AAACATCGCAGTCAGTATTCTTCAAAGAAACAGTATAATCAATGAAAAGTCACATACATGTTGAACACTCCAAAGTGTCCACAAAGTAATC AAAAAAGAGAAACAAGTACTCAACAGAAGAAGAATGTAACAACACAAAAGGAACAAGGTTTCTGATCACAATTCTTCCACACTGGAACCACAAAAGGGCAACACGTCCATGCCCATCTATTTATGCATACTGTATGTGA ]
[+] EMBL CD139999 [ GTCAGTATTCTTCAAAGAAACAGTATAATCAATGAAAAGTCACATACATGTTGAACACTCCAAAGTGTCCACAAAGTAATC AAAAAAGAGAAACAAGTACTCAACAGAAGAAAAATGTAACAAAACAAAAGGAACAAGGTTTCTGATCACAATTCTTCCACACTGGAACCACAAAAGGGCAACACGTCCATGCCCATCTATTTATGCATACTGTATGTGAGTGTGTGTGTGTATGTGTACGTGTTTGTGTCCATATANTAAT ]
[-] EMBL BF936168 [ GAAAAGTCGCATACACGTTGAACACTCCAAAGTGTCCACAGAATAATCAAAAAAAGAGAAACAAGTACTCAACAGAAGAAAAATGTAGCAAAACAAAAGGAACAAGGTTTCTGATCACAATTCTTCCACACTGGAACCAC AAAGGGCAACACGTCCATGCCCATCTATTTATGCATACTGTATGTGA GTGTGTGTGTATGTGTACGTGTTTGTGCCCATATA TAAATGCATGAATGTATGTGTGGATGCATGCATTAACAGCCTATGGTGGTACAGATGGATAGTTGAATAGTCAAATATGCACGAATTTATTTACAAACACATAGGAACTGGATACAGCAAACT ATATACATACACAGTAAGATAGATAAATAAATAGAGAGAGAGA GAGAGAACGACGGGGTATATTCATACACAGGTCAATAAGACTCCTCATTCTCCTCAGGTCAATGCACTGTTCAACAAATTCCAATAAACGACGACCGGTAGAATTCCGGTTTCACAGAGCCACCATCAGCACCATGTTTCACTGTTTTGTAAGTTTGCGCTGGTACGGTTTACGGCTTCCCATAACGAGTTAGGTATGTCGATAATAGCCACAAAATAAATCAGTGGATGAGGAGAATCAATT ]
[+] EMBL CD142889 [ GATAGTTGAATAGTCAGATATGCACGAATTTATTTACAAACACATAGGAACTGGATACAGCAAACT ATATACATACACAGTAAGATAGATAAATAGAT AGAGAGAGAGAGGGAGAGAACGAC GCGTACATTCATACACAAGGCTATAAGACTCCTCATTCTCCTCA GTCAATGCACTGTTCAACAAATTCCAATAAACGACGACC GTAGAATTCCGGTTTCACAGAACCTCCATCAGCACCATGTTTCACTGTTTTGTAAGTTTGCGCT GTAC GTCTAC GCATCCCATAACGAGTTA GTATGTCGATAATAGCCAC ]
[-] EMBL CD112447 [ TAGTTGAATAGTCAGATATGCACGAATTTATTTACAAACACATAGGAACTGGATACAGCAAACT ATATACATACACAGTAAGATAGATAAATAGAT AGAGAGAGAGAGGGAGAGAACGAC GCGTACATTCATACACAAGTCTATAAGACTCCTCATTCTCCTCA GTCAATGCACTGTTCAACAAATTCCAATAAACGACGACC GTAGAATTCCGGTT ]
[+] EMBL CD179611 [ GAATTTATTTACAAACACATAGGAACTGGATACAGCAAACT ATATACATACACAGTAAGATAGATAAATAAAT AGAGAGAGA GAGAGAACGAC GCGTATATTCATACACAGGTCAATAAGACTCCTCATTCTCCTCA GTCAATGCACTGTTCAACAAATTCCAATAAACGACGACC GTAGAATTCCGGTTTCACAGAGCCACCATCAGCACCATGTTTCACTGTTTTGTAAGTTTGCGCT GTAC GTTTAC GCATCCCATAACGCGTTA GTATGTCGATAATAGCCACAAAATAAATCAGTGGATGAGGAGAATCAATTGAACTTTTGATTCCATAATGTTCTAAAGTAGGATGCAATTCACCTGAGAATAATTGAGGTAGACATTCTGCACCAGGTGGACTATCGGGTGGGGTCAATTCACTTGTAGGGACTTGTGTATTATTCTCTGGTATACTGATCCCGTCCTCCTCTTCATCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGANCAACGACCACATTGCCATTGTGAGC ]
[+] EMBL CD161655 [ GAATTTATTTACAAACACATAGGAACTGGATACAGCAAACT ATATACATACGCAGTAAGATAGATAAATAGAT AGAGAGAGAGAGGGAGAGAACGAC GCGTACATTCATACACAAGTCTATAAGACTCCTCATTCTCCTCA GTCAATGCACTGTTCAACAAATTCCAATAAACGACGACC GTAGAATT ]
[-] EMBL CD077654 [ GATACAGC AACTAATATACATACACAGTAAGATAGATAAATAGAT AGAGAGAGAGAGGGAGAGANCGAC GCGTACATTCATACACAAGTCTATAAGACTCCTCATTCTCCTCA GTCAATGCACTGTTCAACAAATTCCAATAAACGACGACC GTAGAATTCCGGTTTCACAGAACCACCATCAGCACCATGTTTCA ]
[-] EMBL CD169732 [ AGANCNAC GCGTATATTCATACACAGGCCAATAAGACTCCTCATTCTCCTCA GTCAATGCACTGTTCAACAAATTCCAATAAACGACGACC GTAGAATTCCGGTTTCACAGAGCCACCATCAGCACCATGTTTCACTGTTTTGTAAGTTTGCGCT GTAC GTTTAC GCATCCCATAACGAGTTA GTATGTCGATAATAGCCACAAAATAAATCAGTGGATGAGGAGAATCAATTGAACTTTTGATTCCATAATGTTCTAAAGTAGGATGCAATTCACCTGAGAATAATTGAGGTAGACATTCTGCACCAGGTGGACTATCGGGTGGGGTCAATTCACTTGTAGGGACTTGTGTATTATTCTCTGGTATACTGATCCCGTCCTCCTCTTCATCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAG ]
[-] EMBL CD113527 [ TCCAAAAAACGACGACC GTAGAATTCCGGTCTCACAGAGCCACCATCAGCACCATGTTTCACTGTTTTGTAAGTTTGCGCT GTAC GTTTAC GCATCCCATAACGAGTTA GTATGTCGATAATAGCCGCAAAATAAATCAGTGGATGAGGAGAATCAATTGAACTTTTGATTCCATAATGTTCTAAAGTAGGATGCAATTCACCTGAGAATAATTGAGGTAGACATTCTGCACCAGGTGGACTATCGGGTGGGGTCAATTCACTTGTAGGGACTTGTGTATTATTCTCTGGTATACTGATCCCGTCCTCCTCTTCATCGT ]
[-] EMBL CD084183 [ TTCACAGAACCACCATCAGCACCATGTTTCACTGTTTTGTAAGTTTGCGCT GTAC GTTTAC GCATCCCATAACGAGTTA GTATGTCGATAATAGCCACTAAATCAATCAGTGGATGAGGAGAATCAATTGAACTTTTGATTCCATAATGTTCTAAAGTAGGATGCAATTCACCTGAGAATAATTGAGGTAGACATTCTGCACCAGGTGGACTATCGGCTGGGGTCAATTCACTTGTAGGGACTTGTGTATTATTCTCTGGTATACTAATCCCGTCCTCCTCTTCATCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCTACTCCGACACCACCAACACCACAACTAGCAGCCTCAGCAGCTGCTGACGAGCT ]
[+] EMBL CD168954 [ CCCATAACGAGTTA GTATGTCGATAATAGCCACAAAATAAATCAGTGGATGAGGAGAATCAATTGAACTTTTGATTCCATAATGTTCTAAAGTAGGATGCAATTCACCTGAGAATAATTGAGGTAGACATTCTGCACCAGGTGGACTATCGGGTGGGGTCAATTCACTTGTAGGGACTTGTGTATTATTCTCTGGTATACTAATCCCGTCCTCCTCTTCATCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAGCAGCTGCTG ]
[+] EMBL CD162075 [ CCATAACGAGTTA GAATGTGGATAATAGCCACAAAATAAATCAGTGGATGAGGAGAATCAATTGAACTTTTGATTCCGTAATGTTCTAAAGTAGGATGCAATTCTCCTGAGAATAATTGAGGTAGACATTCTGCACCACGTGGACTATCGGGTGGGGTCAATTCACTTGTAGGGACTTGTGTATTATTCTCTGGTATACTAATCCCGTCCTCCTCTTCATCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAGCAGCTGCTGACGAGCTCAGACCAGGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCA ]
[+] EMBL CD186404 [ ATCAATTGAACTTTTGATTCCATAATGTTCTAAAGTAGGATGCAATTCACCTGAGAATAATTGAGGTAGACATTCTGCACCAGGTGGACTATCGGGTGGGGTCAATTCACTTGTAGGGACTTGTGTATTATTCTCTGGTATACTGATCCCGTCCTCCTCTTCATCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGCAGACACCATCCTATCGTCGAAGCCCCGACTGTTAGGTTCCAACACACCA ]
[+] EMBL CD068124 [ CGT CT CTCTTCATCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCGTCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGCA ]
[+] EMBL CD086957 [ ATCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAGCAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTTACCTGAAGACACCATCCTATCATCGAAGCCCCGACGGTc ]
[-] EMBL CD148592 [ TCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAGCAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGAAGACACCATCCTATCat ]
[-] EMBL CD148610 [ TCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCGGCAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGAAGACACCATCCTATCat ]
[-] EMBL CD098252 [ TCACCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGCAGACACCATCCTATCGT ]
[-] EMBL CD098380 [ TCACCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGCAGACACCATCCTATCGT ]
[-] EMBL CD098381 [ TCACCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGCAGACACCATCCTATCGT ]
[-] EMBL CD098263 [ GTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGCAGACACCATCCTATCGT ]
[-] EMBL CD098298 [ GTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAGCAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGAAGACACCATCCTATCat ]
[-] EMBL CD116436 [ AGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGCAGACACCATCCTATCGTCGAAGCCCCGACTGTTAGGTTCCAACACACCACTATTACTACCACCACCACCTCCACCAACACCCGCACCCACACA]
[-] EMBL CD148474 [ CCACCAACACCACAACTAGCGGCCTCAGCAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGGCCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCTGAAGACACCATCCTATCat ]
consensusID : consensus_11128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 604 fasta sequence
[TATGCCAAGTAGATTCAAGTTTAAGGAGTACTGCCCAATGGTGTTCAAGTCATTGCGAGATCGATTTGGAGTTGACAAGATGGATTATTGGGACTCTTTCACCAGACACCAACCATTGTGGGATAGTACACGTGGGAAATCTGGATCGAAATTTCTAGTCACGTATAACCGACAATTTGTGGCCAAAACAATCAGTTCAGAAGAAGTTGAACAAATGCATCAAATGTTAGAAGAATATTATTCCTATATTGTCAA-GGGACACGGTCAAACACTGCTT-CCTC-AATTTCTTGGACTTTATCGACTTACAGTGAATGATCAGGAGTCGTATATATTAGTAATGAGAAATGTGTTCAGCCCAAGACTTGCAATTCACAAGAAATATGATTTGAAGTCGAAGCCTTTACCGACTCTGAAAGATGCAGATTTTCTCACAGATTTGTGCAAAATGCATATTGGTGAAGAGTCTAAAAAGAAAATGTTAAGTACTCTGGAATGTGATATACAATTCTTACAGGAGAACAATTTGATCGACTACAGCCTTCTCATTGGGGTGCATGATCCTGAGATTGCA-CTGGCTAGTTCGCTTGAGGATGCCGGTGATGAT]
[+] EMBL CD165386 [TATGCCAAGTAGATTCAAGTTTAAGGAGTACTGCCCAATGGTGTTCAAGTCATTGCGAGATCGATTTGGAGTTGACAAGATGGATTATTGGGACTCTTTCACCAGACACCAACCATTGTGGGATAGTACACGTGGGAAATCTGGATCGAAATTTCTAGTCACGTATAACCGACAATTTGTGGCCAAAACAATCAGTTCAGAAGAAGTTGAACAAATGCATCANATGTTAGAAGAATATTATTCCTATATTGTCAAGGGGACACGGTC AACACTGCTT CCCCTCATTTC TGGACTT ]
[+] EMBL CD165327 [TATGCCAAGTAGATTCAAGTTTAAGGAGTACTGCCCAATGGTGTTCAAGTCATTGCGAGATCGATTTGGAGTTGACAAGATGGATTATTGGGACTCTTTCACCAGACACCAACCATTGTGGGATAGTACACGTGGGAAATCTGGATCGAAATTTCTAGTCACGTATAACCGACAATTTGTGGCCAAAACAATCAGTTCAGAAGAAGTTGAACAAATGCATCANATGTTAGAAGAATATTATTCCTATATTGTCAA GGGACACGGTCAAACACTGCTT CCTC AATTTCTTGNACTT ]
[+] EMBL CD165377 [TATGCCAAGTAGATTCAAGTTTAAGGAGTACTGCCCAATGGTGTTCAAGTCATTGCGAGATCGATTTGGAGTTGACAAGATGGATTATTGGGTCTCTTTCACCAGACACCAACCATTGTGGGATAGTACACGTGGGAAATCTGGATCGAAATTTCTAGTCACGTATAACCGACAATTTGTGGCCAAAACAATCAGTTCAGAAGAAGTTGAACAAATGCATCAAATGTTAGAAGAATATTATTCCTATATTGTCAA GGGACACGGTCAAACACTGCTT CCTC AATTTCTTGGACTTTATCGACTTACAGTGAATGATCAGGAGTCGTATATATTAGTAAT ]
[+] EMBL CD165300 [TATGCCAAGTAGATTCAAGTTTAAGGAGTACTGCCCAATGGTGTTCAAGTCATTGCGAGATCGATTTGGAGTTGACAAGATGGATTATTGGGACTCTTTCACCAGACACCAACCATTGTGGGATAGTACACGTGGGAAATCTGGATCGAAATTTCTAGTCACGTATAACCGACAATTTGTGGCCAAAACAATCAGTTCAGAAGAAGTTGAACAAATGCATCAAATGTTAGAAGAATATTATTCCTATATTGTCAA GGGACACGGTCAAACACTGCTTCCCTC ATTTCTTGGACTTTATC ]
[+] EMBL CD181018 [ cCACCAGACACCAACCATTGTGGGATAGTACACGTGGGAAATCTGGATCGAAATTTCTAGTCACGTATAACCGACAATTTGTGGCCAAAACAATCAGTTCAGAAGAAGTTGAACAAATGCATCAAATGTTAGAAGAATATTATTCCTATATTGTCAA GGGACACGGCCAAACACTGCTT CCTC AATTTCTTGGACTTTATCGACTTACAGTGAATGATCAGGAGTCGTATATATTAGTAATGAGAAATGTGTTCAGCCCAAGACTTGCAATTCACAAGAAATATGATTTGAAGTCGAAGCCTTTACCGACTCTGAAAGATGCAGATTTTCTCACAGATTTGTGCAAAATGCATATTGGTGAAGAGTCTAAAAAGAAAATGTTAAGTACTCTGGAATGTGATATACAATTCTTACAGGAGAACAATTTGATCGACTACAGCCTTCTCATTGGGGTGCATGATCCTGAGATTGCA CTGGCTAGTTCGCTTGAGGATGCCGGTGATGAT]
[+] EMBL CD180634 [ ATTGTGGGATAGTACACGTGGGAAATCTGGATCGAAATTTCTAGTCACGTATAACCGACAATTTGTGGCCAAAACAATCAGTTCAGAAGAAGTTGAACAAATGCATCAAATGTTAGAAGAATATTATTCCTATATTGTCAA GGGACACGGTCAAACACTGCTT CCTC AATTTCTTGGACTTTATCGACTTACAGTGAATGATCAGGAGTCGTATATATTAGTAA ]
[-] EMBL CD166171 [ AGTTGAACAAATGCATCAAATGTTAGAAGAATATTATTCCTATATTGTCAA GGGACACGGTCAAACACTGCTT CCTC AATTTCTTGGACTTTATCGACTTACAGTGAATGATCAGGAGTCGTATATATTAGTAATGAGAAATGTGTTCAGCCCAAGACTTGCAATTCACAAGAAATATGATTTGAAGTCGAAGCCTTTACCGACTCTGAAAGATGCAGATTTTCTCACAGATTTGTGCAAAATGCATATTGGTGAAGAGTCTAAAAAGAAAATGTTAAGTACTCTGGAATGTGATATACAATTCTTACAGGAGAACAATTTGATCGACTACAGCCTTCTCATTGGGGTGCATGATCCTGAGCTTGCACCTGGCTAGTTC ]
consensusID : consensus_11128#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[GCATCACCATCATCACCATCTTTACCGGCATCCTCAAGTGAACTAGCCAGTGCAATCTCAGGATCATGCACGAATTTATTTACAAACACATAGGAACTGGATACAGCAAACTATATACATACACAGTAAGATAGATAAATAAATAGAGAGAGAGAGAGAGAACGACGCGTATATTCATACACAGGTCAATAAGACTCCTCATTCTCCTCAGTCAATGCACTGTTCAACAAATTCCAATAAACGACGACCGTAGAATTCCGGTTTCACAGAGCCACCATCAGCACCATGTTTCACTGTTTTGTAAGTTTGCGCTGTACGTTTACGCATCCCATAACGAGTTAGTATGTCGATAATAGCCACAAAATAAATCAGTGGATGAGGAGAATTTGTAGGGACTTGTGTATTATTCTCTGGTATACTGATCCCGTCCTCCTCTTCATCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCA]
[+] EMBL CD128930 [GCATCACCATCATCACCATCTTTACCGGCATCCTCAAGTGAACTAGCCAGTGCAATCTCAGGATCATGCACGAATTTATTTACAAACACATAGGAACTGGATACAGCAAACTATATACATACACAGTAAGATAGATAAATAAATAGAGAGAGAGAGAGAGAACGACGCGTATATTCATACACAGGTCAATAAGACTCCTCATTCTCCTCAGTCAATGCACTGTTCAACAAATTCCAATAAACGACGACCGTAGAATTCCGGTTTCACAGAGCCACCATCAGCACCATGTTTCACTGTTTTGTAAGTTTGCGCTGTACGTTTACGCATCCCATAACGAGTTAGTATGTCGATAATAGCCACAAAATAAATCAGTGGATGAGGAGAATTTGTAGGGACTTGTGTATTATTCTCTGGTATACTGATCCCGTCCTCCTCTTCATCGTCATCATCACCTGTGCTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCAACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGATCTGGCCATCGACAAACGACCACATTGCCA]
consensusID : consensus_11128#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[TAAAAATCTTCACATTCGGCACATACTTTCTGTACAAACGAGAATTAATGCTACACACACAGATAAAACCTTAAACATTATTATATATTTCATTCCAAAAATACAAACACAAAATCTCCTCTCACCAATTGAACTTTTGATTCCATAATGTTCTAAAGTAGGATGCAATTCACCTGAGAATAATTGAGGTAGACATTCTGCACCAGGTGGACTATCGGGTGGGGTCAATTCACCTGAAACGATCCACAGAGAAAGTATACACAGAAAATCAAATCAACTATTGAACTGCATATTCGTCCGTCTCCAATTCTCATACAATCAACCAAACACTAGTCGATTCAGGTGATGCACAATCCGACCAACCACTCATAGATATACAGTAAATCACCTCGCATGCATGCATTCATATCAATCCAAATCGCCACAACTCAACTCTCATCAGCATTGTCAAAAAGGAACTAAACAAGAACTATCAGTATTTTCATAAACAAGAAAACAGATCACCGAGATCCCAATCTCAGGATCGACATTTTGTCGAGCCAA]
[-] EMBL CD084829 [TAAAAATCTTCACATTCGGCACATACTTTCTGTACAAACGAGAATTAATGCTACACACACAGATAAAACCTTAAACATTATTATATATTTCATTCCAAAAATACAAACACAAAATCTCCTCTCACCAATTGAACTTTTGATTCCATAATGTTCTAAAGTAGGATGCAATTCACCTGAGAATAATTGAGGTAGACATTCTGCACCAGGTGGACTATCGGGTGGGGTCAATTCACCTGAAACGATCCACAGAGAAAGTATACACAGAAAATCAAATCAACTATTGAACTGCATATTCGTCCGTCTCCAATTCTCATACAATCAACCAAACACTAGTCGATTCAGGTGATGCACAATCCGACCAACCACTCATAGATATACAGTAAATCACCTCGCATGCATGCATTCATATCAATCCAAATCGCCACAACTCAACTCTCATCAGCATTGTCAAAAAGGAACTAAACAAGAACTATCAGTATTTTCATAAACAAGAAAACAGATCACCGAGATCCCAATCTCAGGATCGACATTTTGTCGAGCCAA]
consensusID : consensus_11128#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[TTTTATTTTTTTTTTTTTTATTCATAAGACGCTTTATATGATTATTAATGCAACGAAGAAGTCAGGAGAAAAAAGTAACATTCAAACACAAAACTACGACGGAATATTAAATAGAAAGAAATTAATAACCATACAATATTGTAATATCATATAATATTCTTACACCAAAAACTGTAAGTCTAAAGTCGGCTAATCTCAACATAAAACAACATCAATGTATTGATTATTCATTTTCATAATAGTAAATTCTCACGTAGTAAACACAATCACACTGCTTACAATTAGTCAACACTCAGCTAACCATATAATATCACATCCAACATCATTCTACCTTCAACAACTATCCAAACATCACAGTCAGTATTCTTCAAAGAAACAGTATAATCAATGAAAAGTCACATACATGTTGAACACTCCAAAGTGTCCACAAAGTAATCAAAACTGAGAAACAAGTACTCAACAGAAGACAATGTAACAGGGAGATAGACATG]
[+] EMBL AI394845 [TTTTATTTTTTTTTTTTTTATTCATAAGACGCTTTATATGATTATTAATGCAACGAAGAAGTCAGGAGAAAAAAGTAACATTCAAACACAAAACTACGACGGAATATTAAATAGAAAGAAATTAATAACCATACAATATTGTAATATCATATAATATTCTTACACCAAAAACTGTAAGTCTAAAGTCGGCTAATCTCAACATAAAACAACATCAATGTATTGATTATTCATTTTCATAATAGTAAATTCTCACGTAGTAAACACAATCACACTGCTTACAATTAGTCAACACTCAGCTAACCATATAATATCACATCCAACATCATTCTACCTTCAACAACTATCCAAACATCACAGTCAGTATTCTTCAAAGAAACAGTATAATCAATGAAAAGTCACATACATGTTGAACACTCCAAAGTGTCCACAAAGTAATCAAAACTGAGAAACAAGTACTCAACAGAAGACAATGTAACAGGGAGATAGACATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11128#0 AAACATCGCAGTCAGTATTCTTCAAAGAAACAGTATAATCAATGAAAAGTCACATACATG 60
consensus_11128#2 ------------------------------------------------------------
consensus_11128#4 ------------------------------------------------------------
consensus_11128#3 ------------------------------------------------------------
consensus_11128#1 ------------------------------------------------------------
consensus_11128#0 TTGAACACTCCAAAGTGTCCACAAAGTAATCAAAAAAGAGAAACAAGTACTCAACAGAAG 120
consensus_11128#2 ------------------------------------------------------------
consensus_11128#4 ------------------------------------------------------------
consensus_11128#3 ------------------------------------------------------------
consensus_11128#1 ------------------------------------------------------------
consensus_11128#0 AAAAATGTAACAAAACAAAAGGAACAAGGTTTCTGATCACAATTCTTCCACACTGGAACC 180
consensus_11128#2 ------------------------------------------------------------
consensus_11128#4 ------------------------------------------------------------
consensus_11128#3 ------------------------------------------------------------
consensus_11128#1 ------------------------------------------------------------
consensus_11128#0 ACAAAGGGCAACACGTCCATGCCCATCTATTTATGCATACTGTATGTGAGTGTGTGTGTA 240
consensus_11128#2 ------------------------------------------------------------
consensus_11128#4 ------------------------------------------------------------
consensus_11128#3 ------------------------------------------------------------
consensus_11128#1 ------------------------------------------------------------
consensus_11128#0 TGTGTACGTGTTTGTGTCCATATATAATTGCATGAATGTATGTGTGGATGCATGCATTAA 300
consensus_11128#2 -----------------------------GCATCACCAT---CATCACCATCTTTACCGG 28
consensus_11128#4 ------------------------------------------------------------
consensus_11128#3 ------------------------------------------------------------
consensus_11128#1 --------------------------------------------------TATGCCAAGT 10
consensus_11128#0 CAGCCTATGGTGGTACAGATGGATAGTTGAATAGTCAGAT-ATGCACGAATTTATT---T 356
consensus_11128#2 CATCCTCAAGTG----AACTAGCCAGTGCAATCTCAGGATCATGCACGAATTTATT---T 81
consensus_11128#4 ----------TTTTATTTTTTTTTTTTTTATTCATAAGACGCTTTATATGATTATT---A 47
consensus_11128#3 -------------------------TAAAAATCTTCACATTCGGCACATACTTTCTG--T 33
consensus_11128#1 AGATTCAAGTTTAAGGAGTACTGCCCAATGGTGTTCAAGTCATTGCGAGATCGATTTGGA 70
* *
consensus_11128#0 ACAAACACATA--GGAACTGG-ATACAGCAAACTATATACATACACAGTAAGATAGATAA 413
consensus_11128#2 ACAAACACATA--GGAACTGG-ATACAGCAAACTATATACATACACAGTAAGATAGATAA 138
consensus_11128#4 ATGCA-ACGAA--GAAGTCAG-GAGAAAAAAGTAACATTCAAACACAAAACTACGACGGA 103
consensus_11128#3 ACAAACGAGAATTAATGCTAC-ACACACAGATAAAACCTTAAACATTATTATATATTTCA 92
consensus_11128#1 GTTGACAAGATGGATTATTGGGACTCTTTCACCAGACACCAACCATTGTGGGATAGTACA 130
* * * ** * *
consensus_11128#0 ATAGATAGAGAGAGA-GA-GAGA--ACGACGCGTACATT-CATACACAAGTCTATAAGAC 468
consensus_11128#2 ATAAATAGAGAGAGA-GA-GAGAGAACGACGCGTATATT-CATACACAGGTCAATAAGAC 195
consensus_11128#4 ATAT-TAAATAGAAA-GA-AATT-AATAAC-CATACAAT-ATTGTAATATCATATAATAT 157
consensus_11128#3 TTCCAAAAATACAAA-CACAAAATCTCCTCTCACCAATTGAACTTTTGATTCCATAATGT 151
consensus_11128#1 CGTGGGAAATCTGGATCGAAATTTCTAGTCACGTATAACCGACAATTTGTGGC-CAAAAC 189
* * * * * * * **
consensus_11128#0 TCCT-CATTCTCCTCAGTCAATGCACTGTTCAACAAATTCCAATAAACGACGACCG-TAG 526
consensus_11128#2 TCCT-CATTCTCCTCAGTCAATGCACTGTTCAACAAATTCCAATAAACGACGACCG-TAG 253
consensus_11128#4 TCTTACACCAAAAACTGTAAGTCTAAAGT-CGGCTAATCTCAACATAAAACAACAT-CAA 215
consensus_11128#3 TCTAAAGTAGGATGCAATTCACCTGAGAA-TAATTGAGGTAGACATTCTGCACCAGGTGG 210
consensus_11128#1 AATCAGTTCAGAAGAAGTTGAACAAATGC--ATCAAATGTTAGAAGAATATTATTCCTAT 247
* * *
consensus_11128#0 AATTCCGGTTTCACAGAGCCACCATCAGCACCATGTTTCACTGTTTT--GTAAGTTTGCG 584
consensus_11128#2 AATTCCGGTTTCACAGAGCCACCATCAGCACCATGTTTCACTGTTTT--GTAAGTTTGCG 311
consensus_11128#4 TGTATTGATT------ATTCATTTTCATAATAGTAAATTCTCACGTA--GTAAAC----- 262
consensus_11128#3 ACTATCGGGT----GGGGTCAATTCACCTGAAACGATCCACAGAGAAA-GTATACACAGA 265
consensus_11128#1 ATTGTCAAGGGACACGGTCAAACACTGCTTCCTCAATTTCTTGGACTTTATCGACTTACA 307
* * *
consensus_11128#0 CTGTACGTTTACGCATCCCATAACGAGTTAGTATGTCGATAATAGCCACAAAATAAATCA 644
consensus_11128#2 CTGTACGTTTACGCATCCCATAACGAGTTAGTATGTCGATAATAGCCACAAAATAAATCA 371
consensus_11128#4 ----ACAATCACACTGCTTACAATTAGTCAACACTCAGCTAA---CCATATAATATCACA 315
consensus_11128#3 AAATCAAATCAACTATTGAACTGCATATTCGTCCGTCTCCAATTCTCATACAATCAACCA 325
consensus_11128#1 GTGAATGATCAGGAGTCGTATATATTAGTAATGAGAAATGTGTTCAGCCCAAGACTTGCA 367
* * * * **
consensus_11128#0 GTGGATGAGGAGAATCAATTGAACTTTTGATTCCATAATGTTCTAAAGTAGGATGCAATT 704
consensus_11128#2 GTGGATGAGGAGAAT--------------------------------------------- 386
consensus_11128#4 TCCAAC----ATCAT--------------------------------------------- 326
consensus_11128#3 AACACT--AGTCGATTCAGGTGATGCACAATCCGA------------------------- 358
consensus_11128#1 ATTCACAAGAAATATGATTTGAAGTCGAAGCCT--------------------------- 400
**
consensus_11128#0 CACCTGAGAATAATTGAGGTAGACATTCTGCACCAGGTGGACTATCGGGTGGGGTCAATT 764
consensus_11128#2 ------------------------------------------------------------
consensus_11128#4 ----------------------------------------------------------TC 328
consensus_11128#3 -------------------------------------------------------CCAAC 363
consensus_11128#1 -------------------------------------------------------TTACC 405
consensus_11128#0 CACTTGTAGGGACTTGTGTATTATTCTCT-GGTATACTGATCCCGTCCTCCTCTTCATCG 823
consensus_11128#2 ---TTGTAGGGACTTGTGTATTATTCTCT-GGTATACTGATCCCGTCCTCCTCTTCATCG 442
consensus_11128#4 TACCTTCAACAACTATCCAAACATCACAG-TCAGTATTCTTCAAAGAAACAGTATAATCA 387
consensus_11128#3 CACTCATAGATATACAGTAAATCACCTCG-CATGCATGCATTC-ATATCAATCCAAATCG 421
consensus_11128#1 GACTCTGAAAGATGCAGATTTTCTCACAGATTTGTGCAAAATGCATATTGGTGAAGAGTC 465
* * *
consensus_11128#0 TCATCAT--CACCTGTG----CTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCA 877
consensus_11128#2 TCATCAT--CACCTGTG----CTCGCATTCCCAGTCCCAAAGCCAACTCCGACACCACCA 496
consensus_11128#4 --ATGAA--AAGTCACA----TACATGTTGAACACTCCAAAGT-GTCCACAAAGTAATCA 438
consensus_11128#3 CCACAACTCAACTCTCA----TCAGCATTGTCAAAAAGGAACTAAAC--AAGAACTATCA 475
consensus_11128#1 TAAAAAGAAAATGTTAAGTACTCTGGAATGTGATATACAATTCTTACAGGAGAACAATTT 525
* * * * * * *
consensus_11128#0 ACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGAT 937
consensus_11128#2 ACACCACAACTAGCAGCCTCAACAGCTGCTGACGAGCTCAGACCAAGCACAATACTCGAT 556
consensus_11128#4 AAACTGAGAAACAAGTACTCAACAGAAGACAATGTAACAGGGAGATAGACATG------- 491
consensus_11128#3 GTATTTTCATAAACAAGAAAACAGATCACCGAGATCCCAATCTCAGGATCGACATTTTGT 535
consensus_11128#1 G-ATCGACTACAGCCTTCTCATTGGGGTGCATGATCCTGAGATTGCACTGGCTAGTTCGC 584
* *
consensus_11128#0 CTGGCCATCGACAAACGACCACATTGCCATTGTGAGCTAAGTGATCCCAGACCGTCACCT 997
consensus_11128#2 CTGGCCATCGACAAACGACCACATTGCCA------------------------------- 585
consensus_11128#4 ------------------------------------------------------------
consensus_11128#3 CGAGCCAA---------------------------------------------------- 543
consensus_11128#1 TTGAGGATGCCGGTGATGAT---------------------------------------- 604
consensus_11128#0 GCAGACACCATCCTATCGTCGAAGCCCCGACTGTTAGGTTCCAACACACCACTATTACTA 1057
consensus_11128#2 ------------------------------------------------------------
consensus_11128#4 ------------------------------------------------------------
consensus_11128#3 ------------------------------------------------------------
consensus_11128#1 ------------------------------------------------------------
consensus_11128#0 CCACCACCACCTCCACCAACACCCGCACCCACACA 1092
consensus_11128#2 -----------------------------------
consensus_11128#4 -----------------------------------
consensus_11128#3 -----------------------------------
consensus_11128#1 -----------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||