These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 676 fasta sequence [TTCGGCCGACGGAATCGCTACACGTGAGTGCTGTATACAATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGAAAGTCATTTTGTTATCTAACAAATTTAACCA-TAGATACAGAGATACTCTCATAAT-ATAAA--GGTTGTTT] [+] EMBL CD081655 [TTCGGCCGACGGAATCGCT CACGTGAGTGCTGT TACAATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGAAAGTCATTTTGTTATCTAACAAATTTAACCA TAGATACAGAGATACTCTCATAATAATAAA GTTTGTT ] [+] EMBL CD081923 [ gaAATCGCTACACGTGAGTGCTGTATACAATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGAAAGTCATTNTGTTATCTAACAAATTTAACCA TAGATACAGAGATACTCTCATAAT ATAAA NGTTGTT ] [+] EMBL CD192668 [ ATCGCTACACGTGAGTGCTGTATACAATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACC ] [+] EMBL CD063207 [ CAATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGG ] [-] EMBL CD063234 [ AATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTG ] [-] EMBL CD135286 [ GTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTT ] [+] EMBL CD202789 [ ATTTCTCTTCCCGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAAT ] [+] EMBL CD133059 [ CAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTNAATCATAAGCACTATATTGAAAGTCATTTTGTTATCT ] [+] EMBL AI444555 [ GTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACACATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATGAGCACTATATTGAATGTCATTTTGTTATCTAACATATTTCACCAGTAGATACAGAGATCCTCTCATAAT AAAGATTGGTTGTT ] [+] EMBL AI447082 [ GTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACACATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATGAGCACTATATTGAATGTCATTTTGTTATCTAACATATTTCACCAGTAGATACAGAGATCCTCTCATAAT AAAGATTGGTTGTT ] [+] EMBL SM550 [ GCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGANGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGAAAGTCATTTGGTTATCTAACAAATTTAACCA TAGATACAGAGATACTCTCATAATAATAAA GTTGGTTT] consensusID : consensus_11131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 599 fasta sequence [CTGTCCTGGGACATACGTTGTCGTTGGTTACTTTTCACAAACCAAAAAAATAATTCCGATGCTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA-CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGGAAGTCATTTTGTTATCTA] [+] EMBL CD133218 [CTGTCCTGGGACATACGTTGTCGTTGGTTACTTTTCACAAACCAAAAAAATAATTCCGATGCTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGGAAGTCATTTTGTTATCTA] [+] EMBL CD065021 [ GACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAAAAAAAGCCCACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTTGACCGCCTAATTTCTCATTTTACTTTAATACACACTATTGTAAATCATAAc ] [+] EMBL CD062854 [ TATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGAT ] [-] EMBL CD093118 [ GGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAGAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ] [-] EMBL CD093366 [ GGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAGAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ] [-] EMBL CD093133 [ GGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ] [-] EMBL CD062757 [ AGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATTTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAATCTAAAACTTCCTCCTGTCAAATTGCACTGTTCTATGCTTGCTG ] [+] EMBL CD063076 [ AATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGAC ] [-] EMBL CD063215 [ ATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAGGAA CTAAAACTTCCCCCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAAGCAATCCCAATCATATTAGACG ] [-] EMBL CD063027 [ ATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATC ] [-] EMBL CD138494 [ GGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATC ] [-] EMBL CD124923 [ GGCAACTGAATGGGTTAAAGGTAAAACAATTGATGATGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ] [-] EMBL CD138471 [ GGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ] [-] EMBL CD138483 [ GGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ] [-] EMBL CD093192 [ GGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ] [-] EMBL CD138408 [ TAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGG ] consensusID : consensus_11131#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 591 fasta sequence [TTCGCACGAGGCTGATAAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAACACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACTGACTGGGAATTGGTTTCTTGGAATGCTTTGCCTGAGCATCGGAATTATTTTTTTGGTTTGTGAAAAGTAACCAACGACAACGTATGTCTCAGAACAGAACTACAAGAAAACTTCGTGGTGAAAATCATATTTTATGTACGTTTCATTACAATTAGTCTTTCCACGGCTGTACACTTTGATTATTAATATTAACCTTAGTAGTGTTTTTTGTATAAAAACTGTGGGCTATTTATCTACTTCGTAAGCATATCGCTGCTGT] [+] EMBL CD083541 [TTCGCACGAGGCTGATAAATGATTTCTAATAAGAT GGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAACACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACTGACTGGGAATTGGTTTCTTGGAATGCTTTGCCTGAGCATCGGAATTATTTTTTTGGTTTGTGAAAAGTAACCAACGACAACGTATGTCTCAGAACAGAACTACAAGAAAACTTCGTGGTGAAAATCATATTTTATGTACGTTTCATTACAATTAGTCTTTCCACGGCTGTACACTTTGATTATTTATATTAACC ] [+] EMBL CD130446 [ CTGATAAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAACACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACTGACTGNGAATTGGNTTC ] [+] EMBL CD146081 [ CTGATAAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTANATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAA ] [-] EMBL CD130264 [ TGATAAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATACAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCG ] [+] EMBL AI975294 [ GATAAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAACACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACTGACTGGGAATTGGTTTCTTGGAATGCTTTGCCTGAGCATCGGAATTATTTTTTTGGTTTGTGAAAAGTAACCAACGACAACGTATGTCTCAGAACAGAACTACAAGAAAACTTCGTGGTGAAAATCATATTTTATGTACGTTTCATTACAATTAGTCTTTCCACGGCTGTACACTTTGATTATTAATATTAACCTTAGTAGTGTTTTTTGTATAAAAACTGTGGGCTATTTATCTACTTCGTAAGCATATCGCTGCTGT] [+] EMBL BF936456 [ AAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAA ] [+] EMBL AI976876 [ GTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAACACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACTGACTGGGAATTGGTTTCTTGGAATGCTTTGCCTGAGCATCGGAATTATTTTTTTGGTTTGTGAAAAGTAACCAACGACAACGTATGTCTCAGAACAGAACTACAAGAAAACTTCGTGGTGAAAATCATATTTTATGTACGTTTCATTACAATTAGTCTTTCCACGGCTGTACACTTTGATTACTAATATTAACCTTAGTGGTGTTTTTTGTATAAAGACTGTGGGCTATTTATCTACTTCGTTAGCAT ] consensusID : consensus_11131#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [CAAATTGCACTTTTTAATGCTTGTTGAAGATGCTATCCAGGTTGCTTTTAAAGATTTTATGAAAAAGTCTACTTGCGTATTACCTTTTAAGCACAATTCAATCCCAATCATTTTCGACGTCATAATTTCTCATTTCACTTGGATTGACATTATTGTAAATCATAAGCTCTATATTGAAAGTCATTTTGTTATTTAACAAATTTAACCCTAGATACAGGGATACTCTCATAATAATAAAGGTTGTTTTCATCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AI395113 [CAAATTGCACTTTTTAATGCTTGTTGAAGATGCTATCCAGGTTGCTTTTAAAGATTTTATGAAAAAGTCTACTTGCGTATTACCTTTTAAGCACAATTCAATCCCAATCATTTTCGACGTCATAATTTCTCATTTCACTTGGATTGACATTATTGTAAATCATAAGCTCTATATTGAAAGTCATTTTGTTATTTAACAAATTTAACCCTAGATACAGGGATACTCTCATAATAATAAAGGTTGTTTTCATCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11131#0 TTCGGCCGACGGAATCGCTACACGTGAGTGCTGTATACAATAGTGGTCAATTGACGAACT 60 consensus_11131#1 -----------------CTGTCCTGGGACATACGTTGTCGTTGGTTACTTTTCACAAACC 43 consensus_11131#3 ------------------------------------------------------------ consensus_11131#2 ------------------------------------------------------------ consensus_11131#0 TACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAG 120 consensus_11131#1 AAAAAAATAATTCC---------GATGC-TCAGTCAACCATTACAAGATGTCTAAGACAG 93 consensus_11131#3 ------------------------------------------------------------ consensus_11131#2 ----------------------------TTCGCACGAGGCTGATAAATGATTTCTAATAA 32 consensus_11131#0 CATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGC 180 consensus_11131#1 CATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGC 153 consensus_11131#3 ------------------------------------------------------------ consensus_11131#2 GATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGG 92 consensus_11131#0 TCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGA 240 consensus_11131#1 TCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGA 213 consensus_11131#3 ------------------------------------------------------------ consensus_11131#2 CAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAA 152 consensus_11131#0 GATGTCATGAAGCTTCAAATAAAGGTA-GATGAAAATGGGAAGATAATAGATGCGAAATT 299 consensus_11131#1 GATGTCATGAAGCTTCAAATAAAGGTA-GATGAAAATGGGAAGATAATAGATGCGAAATT 272 consensus_11131#3 ------------------------------------------------------------ consensus_11131#2 CAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTG 212 consensus_11131#0 TAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAA 359 consensus_11131#1 TAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAA 332 consensus_11131#3 ------------------------------------------------------------ consensus_11131#2 GCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAA 272 consensus_11131#0 AGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAA- 418 consensus_11131#1 AGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAA- 391 consensus_11131#3 ------------------------------------------------------------ consensus_11131#2 CACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACT 332 consensus_11131#0 AACTTCCACCTGTCAAATTGCACTGTTCTA--TGCTTGCTGAAGATGCTATCCAGGCTGC 476 consensus_11131#1 AACTTCCACCTGTCAAATTGCACTGTTCTA--TGCTTGCTGAAGATGCTATCCAGGCTGC 449 consensus_11131#3 -------------CAAATTGCACTTTTTAA--TGCTTGTTGAAGATGCTATCCAGGTTGC 45 consensus_11131#2 GACTGGGAATTGGTTTCTTGGAATGCTTTGCCTGAGCATCGGAATTATTTTTTTGGTTTG 392 *** * * * ** * * * * * ** * consensus_11131#0 TATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCA--ATC 534 consensus_11131#1 TATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCA--ATC 507 consensus_11131#3 TTTTAAAGATTTTATGAAAAAGTCTACTTGCGTATTACCTTTTAAGCACAATTCA--ATC 103 consensus_11131#2 TGAAAAGTAACCAACGACAACGTATGTCTCAGAACAGAACTACAAGAAAACTTCGTGGTG 452 * ** * * ** ** ** * * * * * *** * * ** * consensus_11131#0 CCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGA-TAGACATTATTGTAAATCA 593 consensus_11131#1 CCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGA-TAGACATTATTGTAAATCA 566 consensus_11131#3 CCAATCATTTTCGACGTCATAATTTCTCATTTCACTTGGA-TTGACATTATTGTAAATCA 162 consensus_11131#2 AAAATCATATTTTATGT----ACGTTTCATTACAATTAGTCTTTCCACGGCTGTACACTT 508 ****** ** * ** * * ***** ** ** * * ** **** * consensus_11131#0 TAAGCACTA-TATTGAAAGTCATTTTGTTATCTA-ACAAATTTAACCATAGA-TACAGAG 650 consensus_11131#1 TAAGCACTA-TATTGGAAGTCATTTTGTTATCTA-------------------------- 599 consensus_11131#3 TAAGCTCTA-TATTGAAAGTCATTTTGTTATTTA-ACAAATTTAACCCTAGA-TACAGGG 219 consensus_11131#2 TGATTATTAATATTAACCTTAGTAGTGTTTTTTGTATAAA---AACTGTGGGCTATTTAT 565 * * ** **** * * **** * * consensus_11131#0 ATACTCTCATAATA-TAAAGGTTGTTT--------------------------------- 676 consensus_11131#1 ------------------------------------------------------------ consensus_11131#3 ATACTCTCATAATAATAAAGGTTGTTTTCATCTCCCAAAAAAAAAAAAAAAAAAAAAAAA 279 consensus_11131#2 CTACT-TCGTAAGCATATCGCTGCTGT--------------------------------- 591 consensus_11131#0 ------------------------- consensus_11131#1 ------------------------- consensus_11131#3 AAAAAAAAAAAAAAAAAAAAAAAAA 304 consensus_11131#2 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||