These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1162 fasta sequence [AGCAGANATAATGGCGGTGGCTGGCACGACAATGCAAACGG-CGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGTGGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAG-AAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT-GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTTTGACAACTTTTTATCACTTGCTGTAAAATATACAAATCAGTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT] [+] EMBL CD168566 [AGCAGANATAATGGCGGTGGCTGGCACGACAATGCAAACGG CGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGTGGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAG AAGAAATGAAC AAATGAGGTCC AACCTG ] [+] EMBL CD168571 [ gattTAATGGCGGTGGCTGGTACGACAATGCAAACGGCCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGTTTTCGGCAATTATCAGCAACAAGGCTATGGTGGTGGTCCGATGAAAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAAAAGAAACACGT ] [+] EMBL CD165537 [ gagAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCT AGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAG AAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTNTGACAACTATTTATC ] [+] EMBL CD178799 [ GTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAG AAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGNTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGGCATTATCAGCAACAAGGCTATGGTGGGGGGTCCGATGAGAGCACCACCTGCAACTG ] [-] EMBL AI977712 [ ATGTCACAGAAGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAACAGATGTACGAAAAGCGCTCAGTCGAG AAAAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGACGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACAACAACAGCCTTATGCTTATAACGGAGAAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTTTGACAACTTTTTATCACCTGCTGTAAAATATACAAATCAGTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT] [+] EMBL CD120988 [ CAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCAAG AAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGA ] [-] EMBL AI395707 [ CAGTCGAGAAAGAATTGAACAAAATGAGGCNCAAACTTGCACCCATGAGAGCAGATTATAATGGC GTGGCTGGCACGACAATGCAAACGGC GTTTCCAGCCTCAGTCATGGGAACA GGTTATAGTCAACGTTACGCACACCAACA CCTTATGCTTATAACGGAGGA GCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTTTGACAACTTTTTATCACTTGCTGTAAAATATACAAATCAGTTATTCAAAAAAAAAAAAAAAAAAAAAA ] [-] EMBL AI977480 [ AGAAATGAACAAAATGAGGTCCCAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCCCGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTTTGACAACTTTTTATCACTTGCTGTAAAATATACAAATCAGTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT] [-] EMBL CD142260 [ AGAAATGAACAAAATGAGGTCCAAACCTGCACNCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCT ] [+] EMBL CD063231 [ TGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACAATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGG ] [-] EMBL AI394904 [ gCAACACCTTTATGTTTATAACGGAGGAGGCTATGGTTATGCCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTTTGACAACTTTTTATCACTTGGCGTAAAATATACAAATCAGTTATTCTGCTAAAAAAAAAAA ] consensusID : consensus_11166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 829 fasta sequence [CTCGAGGGCCAAAATTCGGCACGAGGGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATNGGTGGTGGTCCGATGAGAGCAACACCTGNCACTGCACAGTATCCCCGTCCTGCTTCATATNNTCGGCATGGTTGGNNCACACGTTGAAAGTTAATTTTGGTATTTCAATACANACGCCTAGTGCATTNNTGACACTTTTTATCACTTGCTGTAAATATACAAAT] [+] EMBL CD079827 [CTCGAGGGCCAAAATTCGGCACGAGGGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATNGGTGGTGGTCCGATGAGAGCAACACCTGNCACTGCACAGTATCCCCGTCCTGCTTCATATNNTCGGCATGGTTGGNNCACACGTTGAAAGTTAATTTTGGTATTTCAATACANACGCCTAGTGCATTNNTGACACTTTTTATCACTTGCTGTAAATATACAAAT] [-] EMBL CD148752 [ CACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTNTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGA ] [+] EMBL CD144367 [ GTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACACTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGA ] [+] EMBL CD132830 [ AGAGAAGAAAC AGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAGCAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATTATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAAC ] [+] EMBL CD144994 [ GTCCTGAGGTTCATGCTGCAGTGAAGAAAATACTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACA ] [+] EMBL CD145112 [ GTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCCTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAg ] [+] EMBL CD145043 [ GTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGGCATTATCAGCAACA ] [-] EMBL CD177846 [ AGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGGACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCCAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGGTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATAGAGGTTGCCC CCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCg ] [-] EMBL CD143186 [ TTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCGAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAGCCTGCTCCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCA ] [-] EMBL CD142836 [ TTTGATGACCCAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGT ] [+] EMBL CD135181 [ ACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAA ] [-] EMBL CD142849 [ ACCAACAGCCATATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGG ] consensusID : consensus_11166#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 625 fasta sequence [TCACCACTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG-GTGGTTTAAGTCCCAAGACCGATGAAAACTCACTCAAAAATTATTAC--GGTCAATGGGGTGAAATTATTGACGT-TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGC] [+] EMBL CD185923 [TCACCACTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG GTGGTTTAAGTCCCAAGACCGATGAAAACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAA ] [+] EMBL CD095138 [ CACCACTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG GTGGTTTAAGTCCCAAGACCGATGAATACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGC] [+] EMBL CD185736 [ ACTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG GTGGTTTAAGTCCCAAGACCGATGAGAACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAA ] [+] EMBL CD148123 [ CTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG GTGGTTTAAGTCCCAAGACCGATGAAAACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGAT ] [+] EMBL CD148111 [ CTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG GTGGTTTAAGTCCCAAGACCGATGAAAACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGAT ] [-] EMBL CD182187 [ CATCGTNNGGTTNAAGTCNCAAGANCGATGAAAACTCACTCAANAA TA TACNNNGTCATNGGGGTGAAATTA TGACGTNNGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACGTATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTA ] [+] EMBL CD145443 [ AAACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTATATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTATATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCA ] [-] EMBL CD144914 [ aATAAC GGTCAATGGGGTGAAATNATNGACGT GGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCG ] [-] EMBL CD157361 [ ATTAC GGTCAATGGGGCGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAGAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACA ] [+] EMBL CD142027 [ TTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACANAATGAGGTC ] [+] EMBL CD142065 [ TTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAA ] [-] EMBL CD142083 [ TGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAG ] [-] EMBL CD142039 [ TGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCAGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAG ] consensusID : consensus_11166#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [GCTCCATATTCCGGCAATGGTTGGCAACAAAGTTGAAGTTAATTTTGTTATTTAAAAACCAAAGGCCTAGTGCATTTTGACAACTTTTTATCACTTGCTGTAAAATATACAAATCAGTTATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGTTGCATTACCGTACTGCGTA] [-] EMBL AI975147 [GCTCCATATTCCGGCAATGGTTGGCAACAAAGTTGAAGTTAATTTTGTTATTTAAAAACCAAAGGCCTAGTGCATTTTGACAACTTTTTATCACTTGCTGTAAAATATACAAATCAGTTATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGTTGCATTACCGTACTGCGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11166#0 AGCAGANATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCA 60 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 TGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGA 120 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 GGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCT 180 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 GATGGGTTCGGCAATTATCAGCAACAAGGCTATGGTGGTGGTCCGATGAGAGCAACACCT 240 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 GCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGA 300 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 AGTTAATTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCC 360 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 ACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAG 420 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 TCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGAC 480 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 AAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGT 540 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 TATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGA 600 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 --TCACCACTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCC 58 consensus_11166#0 TGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGT 660 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 GTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCGGTGGTTTAAGTCCCAA 118 consensus_11166#0 ACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAG 720 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------------------------------------------------------------ consensus_11166#2 GACCGATGAAAACTCACTCAAAAATTATTACGGTCAATGGGGTGAAATTATTGACGTTGT 178 consensus_11166#0 AGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTC 780 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ------CTCGAGGGCCAAAATTCGGCACGAGGGAGGTTTTGGTTTTGTGACATATAAGGA 54 consensus_11166#2 AGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGA 238 consensus_11166#0 ATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGG 840 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 TTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGT 114 consensus_11166#2 TTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGT 298 consensus_11166#0 AGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATC 900 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 AGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAA 174 consensus_11166#2 AGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAA 358 consensus_11166#0 TGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGTGGTGGTCCGATGAGAGCAACACC 960 consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 GAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTT 234 consensus_11166#2 GAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTT 418 consensus_11166#0 TGCAACTGCACAGTATCCCCGTCCTGCTCCA--TATTCCGGCAATGGTTGGCAACAAC-- 1016 consensus_11166#3 -------------------------GCTCCA--TATTCCGGCAATGGTTGGCAACAAA-- 31 consensus_11166#1 TTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATC 294 consensus_11166#2 TTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATC 478 **** * ** ** * * * ** * consensus_11166#0 GTTGAAGTTAAT-TTTGTTAT-TTCAATACCAAACGCCTAGTGCATTTTGACAACTT--- 1071 consensus_11166#3 GTTGAAGTTAAT-TTTGTTAT-TTAAAAACCAAAGGCCTAGTGCATTTTGACAACTT--- 86 consensus_11166#1 ACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGC 354 consensus_11166#2 ACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGC 538 * *** ** **** ** * ** * *** * * * * * consensus_11166#0 TTTATCACTTGCTGTAAAATA-TACAAATCAGTTATTC------------AAAAAAAAAA 1118 consensus_11166#3 TTTATCACTTGCTGTAAAATA-TACAAATCAGTTATTTTTAAAA-----AAAAAAAAAAA 140 consensus_11166#1 TCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGA 414 consensus_11166#2 TCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGA 598 * * *** * ** * *** * * **** *** * * * ** * consensus_11166#0 AAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT---------------- 1162 consensus_11166#3 AAAAAAAAAAAAAAAAACATGCCATGCAGTTGCATTACCGTACTGCGTA----------- 189 consensus_11166#1 AATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTG 474 consensus_11166#2 AATGAACAAAATGAGGTCCAAACCTGC--------------------------------- 625 ** ** **** * * * *** consensus_11166#0 ------------------------------------------------------------ consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 GCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACC 534 consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 ------------------------------------------------------------ consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 TTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGA 594 consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 ------------------------------------------------------------ consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 TGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCA 654 consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 ------------------------------------------------------------ consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 ACAAGGCTATNGGTGGTGGTCCGATGAGAGCAACACCTGNCACTGCACAGTATCCCCGTC 714 consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 ------------------------------------------------------------ consensus_11166#3 ------------------------------------------------------------ consensus_11166#1 CTGCTTCATATNNTCGGCATGGTTGGNNCACACGTTGAAAGTTAATTTTGGTATTTCAAT 774 consensus_11166#2 ------------------------------------------------------------ consensus_11166#0 ------------------------------------------------------- consensus_11166#3 ------------------------------------------------------- consensus_11166#1 ACANACGCCTAGTGCATTNNTGACACTTTTTATCACTTGCTGTAAATATACAAAT 829 consensus_11166#2 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||