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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 37 consensus length = 895 fasta sequence
[TCCGAGGCCATAATTCGGCACGAGGGTTTTTACACATTCAGATACTTACCTGTGGACATACGTGATCCAATGCTGCAGATTAAGGAGACTCTTTGATCAAATTCTGCTTCAATTCTGTTCCCAACCATTTGAAACACTTGTACACCAGCCTAGAGATGTTTTGTCGCTCCTTATTCAAATCTCTCGAAACATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG-AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT-TCGGTGGACAGGAACCCTGGGCAG-AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG-GTCTGACGCTG-ATG-ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG-TGGAACTTCTCAAAATTTCTTGTAGATCGTCAA-GGACAACCGGTTAAAAGATATTCTCCTACAACTGCCCCATATG-ATATTG-AAGGAGATATCAT-GGAGCTTTTGGAGAAGAAGTGATCAATGG-AACTTATGAGCTTTG-AACAAATTCTCGCTATATGACGAT-GGCAATCTCAAATGTTCATTGGTTGCCATTTGATGAAATCAGTTTTGTGTGCACCTGATTGCAGAATTTTGTTTACCTTGCTCATTTTTTTCATTGAAACCACTTCTCAGAATAAATGT-GTTAT]
[+] EMBL CD082564 [TCCGAGGCCATAATTCGGCACGAGGGTTTTTACACATTCAGATACTTACCTGTGGACATACGTGATCCAATGCTGCAGATTAAGGAGACTCTTTGATCAAATTCTGCTTCAATTCTGTTCCCAACCATTTGAAACACTTGTACACCAGCCTAGAGATGTTTTGTCGCTCCTTATTCAAATCTCTCGAAACATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGg ]
[-] EMBL CD076162 [ tTTTTCACACATTCAGATACTTACCTGTGGACATACGTGATCCAATGCTGCAGATTAAGGAGACTCTTTGATCAAATTCTGCTTCAATTCTGTTCCCAACCATTTGAAACACTTGTACACCAGCCTAGAGATGTTTTGTCGCTCCTTATTCAAATCTCTCGAAACATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGgcg ]
[+] EMBL CD059677 [ AAACACTTGTACACCAGCCTAGAGATGTTTTGTCGCTCCTTATTCAAATCTCTCGAAACATTGTTCACGATTAGATGGAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAAAAAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAAAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTACCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAAAAGTTCGTGACTGAAAAGTACGGCGTCCAATTCGATATGTTTTCAAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAA ]
[-] EMBL CD092947 [ cCACCAGCCTAGAGGTGTTTTGCCGCTCCTTATTCAAATCTCTCGAAACATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGtgga ]
[-] EMBL CD162868 [ AGAGATGTTTTGTCGCTCCTTATTCAAATCTCTCGAAACATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCGCGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTG ]
[-] EMBL CD181009 [ GTTTTGTCGCTCCTTATTCAAATCTCTCGAAACATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTG ]
[-] EMBL CD180913 [ TTTTGCCGCTCCTTATTCAAATCTCTCGAAACATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGG ]
[-] EMBL CD180926 [ TTTTGCCGCTCCTTATTCAAATCTCTCGAAACATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGGTTGTCTAAATGTTAAAGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTAAATTAGCATTCCCCTGCAATCAAT TCGGTGG ]
[+] EMBL CD079329 [ TTTGTCGCTCCTTATTCAAATCTCTCGAAACATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATGATATTAAG TGGAACTTCTCAAAATTTCTTGTAGATCGTCAA GGACAACCGGTTAAAAGATATTCTCCTACAACTGCCCCATATG ATATTG AAGGAGATATCAT GGAGCTTTTGGAGAAGAAGTGATCAATGG AACTTATGAGCTNTG AACANATTCTCGCTATATGACGAT GGNCATCTCANATGTTCATTGGTTGCCATTTGATGAAATCAGTTTTGTGTGCACCTGATTGCAGGATTNTGNTTACCTTGCTCATTTTTTTCATTGAAACCATTNCTCAGAATAAATGTNGTT ]
[+] EMBL CD097633 [ TCAAATCTCTCGAAACATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTATGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTG ]
[-] EMBL CD195509 [ ATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTGGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAGCCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAAT ]
[+] EMBL CD155448 [ TTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTGGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACA ]
[-] EMBL CD179439 [ TTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACG ]
[+] EMBL CD155447 [ cactTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTTTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATCAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATGAT ]
[+] EMBL CD151858 [ TGTAACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATACTAGCATTCCCCTGCAATCAAT TCGGTG ]
[+] EMBL AW016948 [ AACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGCCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCCGTGGACAGGAACCCTGGGCAG AAGCGGCGATTAAGAAGTTCGTGACTGAGAAGTACAGCGTCCAATTCGATATGTATTCGAAGATAAAAGTCAATGGCGTCTGACGCTG ATG ATCTGTATGAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG CGGAACTTCTCAAAGTTTCTTG ]
[+] EMBL SMGLUPER [ AACGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG TGGAACTTCTCAAAATTTCTTGTAGATCGTCAA GGACAACCGGTTAAAAGATATTCTCCTACAACTGCCCCATATG ATATTG AAGGAGATATCAT GGAGCTTTTGGAGAAGAAGTGATCAATGG AACTTATGAACTTTG AACAAATTCTCGCTATATGACGAT GGCAGTCTCAAATGTTCATTGGTTGCCATTTGATGAAATCAGTTTTGTGTGCACCTGATTGCAGAATTTTGTTTACCTTGCTCATTTTTTTCATTGAAACCACTTCTCAGAATAAATGT G ]
[+] EMBL BF936124 [ CGCGATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTCAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTCGACAACATGGTACCTTAACAAATAATATTAAG TGGAACTTCTCAAAATTTCTTGTCGATCGTCAA AGACAACCGGCTAAAAGATATTCTCCTACAACTGCCC ]
[+] EMBL CD083415 [ ggCGCGATGTCTTCATCTCACAAGTC TGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG TGGAACTTCTCAAAATTTCTTGTAGATCGTCAA GGACAACCGGTTAAAAGATATTCTCCTACAACTGCCCCATATG ATATTG AAGGAGATATCAT GGAGCTTTTGGAGAAGAAGTGATCAATGG AACTTAT ]
[+] EMBL CD080670 [ GCGATGTCTT ATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG TGGAACTTCTCAAAATTTCTTGTAGATCGTCAA GGACAACCGGTTAAAAGATATTCTCCTACAACTGCCCCATATG ATATTG AAGGAGATATCAT GGAGCTTTTGGAGAAGAAGTGATCAATGG AACTTATGAGCTTTG AACAAATTCTCGCTATATGACGAT GGCAATCTCAAATGTTCATTGGTTGCCATTTGATGAAATCAGTTTTGTGTGCACCTGATTGCAGAATTTTGTTTACCTTGCTCATTTTTTTCATTGAAACCACTTCTCAGAATAAATG ]
[+] EMBL AI067498 [ ATGTCTTCATCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG TGGAACTTCTCAGAATTTCTTGTANATCGTCAA GGACA ]
[+] EMBL AI068151 [ AAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGCGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAACAGTAGACAACATGGTACCTTAAC ]
[+] EMBL AI111023 [ AGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAANATAAAAGTCAATGG GTCTGACNCTG ATG ATCTTTATAAATTCCTCAAAAGTANACAACATGGTACCTTAACAAATAATATTAAGTTGGAACT ]
[-] EMBL CD074591 [ TGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG TGGAACTTCTCAAAATTTCTTGTAGATCGTCAA GGACAACCGGTTAAAAGATATTCTCCTACAACTGCCCCATATG ATATTG AAGGAGATATCAT GGAGCTTTTGGAGAAGAAGTGATCAATGG AACTTATGAGCTTTG AACAAATTCTCGCTATATGACGAT GGCAATCTCAAATGTTCATTGGTTGCCATTTGATGAAATCAGTTTTGTGTGCACCTGATTGCAGAATTTTGTTTACCTTGCTCAGTTTTTTCATTGAAACCAATTCTCAGAATAAATGT ]
[+] EMBL CD129732 [ GGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTATAGAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGCATATTAt ]
[+] EMBL AA917170 [ TATACGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTAATTG AA GTCGCTTGCAAGTGAGGCGCAACGGACAAG ACTATCG CAACTCCAGG AGATGCACACTCGACTGtagc ]
[-] EMBL CD073606 [ GAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATGATATTAAG TGGAACTTCTCAAAATTTCTTGTAGATCGTCAA GGACAACCGGTTAAAAGATATTTTCCTACAACTGCCCCATATG ATATTG AAGGAGATATCAT GGAGCTTTTGGAGAAGAAGTGATCAATGG AACTTATGAGCTTTG AACAAATTCTCGCTATATGACGAT GGCAATCTCAAATGTTCATTGGTTGCCATTTGATGAAATCAGTTTTGTGTGCACCTGATTGCAGGATTTTGTTTACCTTGCTCATTTTTTTCATTGAAACCACTTCTCAGAATAAATGT GTTAT]
[+] EMBL CD062261 [ TCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGGAAGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAAAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCAAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG TGGAACTTCTCAAAATTTCT ]
[+] EMBL CD199817 [ TCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAAT ]
[-] EMBL CD077265 [ CGCTTGCAAGTGAGGCGCAACGGACAAGAACTATCGCCAACTCCAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG TGGAACTTCTCAAAATTTCTTGTAGATCGTCAA GGACAACCGGTTAAAAGATATTCTCCTACAACTGCCCCATATG ATATTG AAGGAGATATCAT GGAGCTTTTGGAGAAGAAGTGATCAATGG AACTTATGAGCTTTG AACAAATTCTCGCTATATGACGAT GGCAATCTCAAATGTTCATTGGTTGCCATTTGATGAAATCAGTTTTGTGTGCACCTGATTGCAGAATTTTGTTTACCTTGCTC TTTTTTTCATTGAAACCACTTCTCAGAATAAATGT ]
[-] EMBL CD119392 [ CAGG AGATGCACACTCGACTGGTTGGCAAAGGCCTCCGTATATTAGCATTCCCCTGCAATCAATAAAGGTGGACAGGAACCCTGGGCAG AAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGAAATCCAATTCGATATGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATT ]
[+] EMBL AA559608 [ TCCCCTGCAATCAAT TCGGTGGACAGGAACCCTGGGCAGNAAGCGGAGATTAAGAAGTTCGTGACTGAGAAGTACGGCGTCCAATTCGATNTGTTTTCGAAGATAAAAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG TGGAACTTCTCAAAATTTCTTGTANATCGTCAAGGGACAACCGGTTAAAANATATTCTCCTACAACTGCCCCATATG ATATTG AAGGAGATATCNT GGAGC ]
[+] EMBL AA559748 [ CGTCCAATTCGATATGTTTTCGAANTTAAAAGTCAATGG GTCTGNCGCTGAATGAATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG TGGAACTTCTCAAAATTTCTTGTANATCGTCAAGGGACAACCGGTTAAAAGNTATTCTCCTACAACTGCCCCATATGAATATTGAAAGGAGATATCATGGGAGCTTTTGGAGAANAAGTGATCAATGGAAACTTATGAGCTTTGAAACAAATTCTCGCTATATGACGATGGGCAA ]
[+] EMBL SM571 [ AAGTCAATGG GTCTGACGCTG ATG ATCTTTATAAATTCCTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAG TGGAACTTCTCAAAATTTCTTGTAGATCGTCAA GGACAACCGGTTAAAAGATATTCTCCTACAACTGCCCCATATG ATATTG AAGGAGATATCAT GGAGCTTTNGGAGAAGAAGTGATCAA ]
[-] EMBL SMAA43892 [ TAATATTAAG TGGAACTTCTCAAAATTTCTTGTAGATCGTCAA GGACAACCGGTTAAAAGATATTCTCCTACAACTGCCCCATATG ATGTTG AAGGAGATATCAT GGAGCTTTTGGAGAAGAAGTGATCAATGG AACTTATGAGCTTTG AACAAATTCTCGCTATATGACGAT GGCAATCTCAAATGTTCATTGGTTGCCATTTGATGAAATCAGTTTTGTGTGCACCTGATTGCAGAATTTTGTTTACCTTGCTCATTTTTTTCATTGAAACCACTTCTCAGAATAAATGT ]
[+] EMBL SM547 [ acgagCAAAATTTCTTGTAGATCGTCAA GGACAACCGGTTAAAAGATATTCTCCTACAACTGCCCCATATG ATATTG AAGGAGATATCAT GGAGCTTTGGGAGAAGAAGTGATCAATGG AACTTATGAGCTTNG AACAAATTCTCGCTATATGACGAT GGCAATCTCAAATGTTCATTGGTTGCCATTTGATGAAATCAGTTTGGTGTGCACCTGATTGCAGAATTTGGTTTACCTGGCTCATTTTTTTCATTGAAACCACTNCTCAGAATAAATG ]
[+] EMBL SM546 [ GGCAATCTCAAATGTTCATTGGTTGCCATTTGATGAAATCAGTTTTGTGTGCACCTGATTGCAGAATTTTGTTTACCTTGCTCATTTTTTTCATTGAAACCACTTCTCAGAATAAATGT ]
consensusID : consensus_11225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[GATAAGTAATGACATATGTTTTAAGATTTCTGACCGAACTTTTAATTTTTTGTAGGATATTGAAGGAGATATCATGGAGCTTTTGGAGAAGAAGTGATCAATGGAACTTATGATCTTTGAACAAATTCTCGCTATATGACGATGGCAATCTCAAATGTTCATTGGTTGCCATTTGATGAAACCAGTTTTGTGTGCACCTGATTGCAGGATTTTGTTTACCTTGCTCATTTTTTTCATTGAAACCACTTCTCAGAATAAATGTGTTATCTATAATTGAATGACTTGTACTTCACTGGACTTGCTTAAGAGTTGACTGAAATGCTTGTCATCGTAATTACCAACCAATTTAATTTCAGAAGTGAACAATAGTAGTTGGACTATTAGAAAAGGTGGTTCATGTCTACCAACCAATTTAATTTGAGAAGTAAACACTAGTGGTTGGACTATTAGAGAAAGTGGTTCATGTTTGCGTCGTAATTATTAATAAAAATTATCGGTTCTGTGGTCTGACAATTTAGTCTAGTCAGTGAACTAATAATAGGGAGTGAAGTACTTGGGCGTGTTGACTGCTTCACTTATCGTGGG]
[+] EMBL CD115433 [GATAAGTAATGACATATGTTTTAAGATTTCTGACCGAACTTTTAATTTTTTGTAGGATATTGAAGGAGATATCATGGAGCTTTTGGAGAAGAAGTGATCAATGGAACTTATGATCTTTGAACAAATTCTCGCTATATGACGATGGCAATCTCAAATGTTCATTGGTTGCCATTTGATGAAACCAGTTTTGTGTGCACCTGATTGCAGGATTTTGTTTACCTTGCTCATTTTTTTCATTGAAACCACTTCTCAGAATAAATGTGTTATCTATAATTGAATGACTTGTACTTCACTGGACTTGCTTAAGAGTTGACTGAAATGCTTGTCATCGTAATTACCAACCAATTTAATTTCAGAAGTGAACAATAGTAGTTGGACTATTAGAAAAGGTGGTTCATGTCTACCAACCAATTTAATTTGAGAAGTAAACACTAGTGGTTGGACTATTAGAGAAAGTGGTTCATGTTTGCGTCGTAATTATTAATAAAAATTATCGGTTCTGTGGTCTGACAATTTAGTCTAGTCAGTGAACTAATAATAGGGAGTGAAGTACTTGGGCGTGTTGACTGCTTCACTTATCGTGGG]
consensusID : consensus_11225#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence
[TCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTNNTTGTNAATGTCGCTTGCAAGTGAGGCGCNACGGACAANAACTATCGCCAACTCCAGGAGATGCNCACTCGACNGGTTGGCAAAGGGCCTCCGTATATTAGCATTCCCCTGCAATCAATTCGGTGGACANGAACCCNGGGCANAAAGCGGAAAATTANCAAGTTTCGTGACTGAAAATTNCGGCGTCCAATTNCAATNTGTTTTCCNAAANANAAAAATTCAATGGGTCTGANCCCTNATNANCCTTTATAAATTCCNCC]
[+] EMBL AW466254 [TCTCACAAGTCTTGGAATTCAATATATGAATTCACTGTTAAGGATATCAATGGTGTGGATGTCTCCTTAGAGAAATACCGTGGTCACGTTTGTCTNNTTGTNAATGTCGCTTGCAAGTGAGGCGCNACGGACAANAACTATCGCCAACTCCAGGAGATGCNCACTCGACNGGTTGGCAAAGGGCCTCCGTATATTAGCATTCCCCTGCAATCAATTCGGTGGACANGAACCCNGGGCANAAAGCGGAAAATTANCAAGTTTCGTGACTGAAAATTNCGGCGTCCAATTNCAATNTGTTTTCCNAAANANAAAAATTCAATGGGTCTGANCCCTNATNANCCTTTATAAATTCCNCC]
consensusID : consensus_11225#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence
[CCGAATTCGGCACGAGCGGCACGAGTACAACTGCCCCATATGATATTGAAGGAGATATCATGGAGCTTTTGGAGAAGAAGTGATCAATGGAACTTTATGAGCTTTTGAAACAAAAATTACTCGCTTAATAATGNACGGATGGCAAATCNTCAAAATGTTCAATTGGTTGCCAATTTGATGAAATCAAGTTTTGTGTGCCACCTGAATTGCAAGATTTTTGTTTCACCTTGCTCTATTTTTTTCTTTTGGAAACCTACTTTCTCAGGAATAAATGGT]
[-] EMBL AA999552 [CCGAATTCGGCACGAGCGGCACGAGTACAACTGCCCCATATGATATTGAAGGAGATATCATGGAGCTTTTGGAGAAGAAGTGATCAATGGAACTTTATGAGCTTTTGAAACAAAAATTACTCGCTTAATAATGNACGGATGGCAAATCNTCAAAATGTTCAATTGGTTGCCAATTTGATGAAATCAAGTTTTGTGTGCCACCTGAATTGCAAGATTTTTGTTTCACCTTGCTCTATTTTTTTCTTTTGGAAACCTACTTTCTCAGGAATAAATGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11225#1 ------------------------------------------------------------
consensus_11225#3 ------------------------------------------------------------
consensus_11225#0 TCCGAGGCCATAATTCGGCACGAGGGTTTTTACACATTCAGATACTTACCTGTGGACATA 60
consensus_11225#2 ------------------------------------------------------------
consensus_11225#1 ------------------------------------------------------------
consensus_11225#3 ------------------------------------------------------------
consensus_11225#0 CGTGATCCAATGCTGCAGATTAAGGAGACTCTTTGATCAAATTCTGCTTCAATTCTGTTC 120
consensus_11225#2 ------------------------------------------------------------
consensus_11225#1 ------------------------------------------------------------
consensus_11225#3 ------------------------------------------------------------
consensus_11225#0 CCAACCATTTGAAACACTTGTACACCAGCCTAGAGATGTTTTGTCGCTCCTTATTCAAAT 180
consensus_11225#2 ------------------------------------------------------------
consensus_11225#1 -----------------------------------GATAAGTAATGACATATGTTTTAAG 25
consensus_11225#3 -------------------------------------------------CCGAATTCGGC 11
consensus_11225#0 CTCTCGAAACATTGTTCACGATTAGATGTAACGCGATGTCTTCATCTCACAAGTCTTGGA 240
consensus_11225#2 --------------------------------------------TCTCACAAGTCTTGGA 16
*
consensus_11225#1 ATTTCTGACCGAACTTTTAATTTTTTGTAGGATATTGAAGGAGATATCATGGAGCTTTTG 85
consensus_11225#3 ACGAGCGGCACGAGTACAACTGCCCCATATGATATTGAAGGAGATATCATGGAGCTTTTG 71
consensus_11225#0 ATTCAATATATGAATTC-ACTGTTAAGGATATCAATGGTGTGGATGTCTC----CTTAGA 295
consensus_11225#2 ATTCAATATATGAATTC-ACTGTTAAGGATATCAATGGTGTGGATGTCTC----CTTAGA 71
* * * * * * * ** * *** ** ***
consensus_11225#1 GAGAAGAAGTGATCAA---TGGAACTT-ATGATCTTT--GAACAAA---TTCTCGCTATA 136
consensus_11225#3 GAGAAGAAGTGATCAA---TGGAACTTTATGAGCTTTTGAAACAAAAATTACTCGCTTAA 128
consensus_11225#0 GAAATACCGTGGTCACGTTTGTCTAATTGTTAATGTCGCTTGCAAGTGAGGCGCAACGGA 355
consensus_11225#2 GAAATACCGTGGTCACGTTTGTCTNNTTGTNAATGTCGCTTGCAAGTGAGGCGCNACGGA 131
** * *** *** ** * * * * *** * * *
consensus_11225#1 TGACG-----ATGGCAATCTC---AAATGTTCA-TTGGTTGCCA-TTTGATGAAACCA-G 185
consensus_11225#3 TAATGNACGGATGGCAAATCNTCAAAATGTTCAATTGGTTGCCAATTTGATGAAATCAAG 188
consensus_11225#0 CAAGAA-CTATCGCCAACTCCAGGAGATGCACACTCGACTGG----TTGGCAAAGG-C-- 407
consensus_11225#2 CAANAA-CTATCGCCAACTCCAGGAGATGCNCACTCGACNGG----TTGGCAAAGGGC-- 184
* * *** * *** ** * * * *** **
consensus_11225#1 TTTTGTGTGC-ACCTGA-TTGCAGGATTTTG--TTTACCTTGCTC-ATTTTTTTCATT-- 238
consensus_11225#3 TTTTGTGTGCCACCTGAATTGCAAGATTTTTGTTTCACCTTGCTCTATTTTTTTCTTTTG 248
consensus_11225#0 CTCCGTATAT--------TAGCATTCCCCTGCAATCAATTCGGTGGACAGGAACCCTG-- 457
consensus_11225#2 CTCCGTATAT--------TAGCATTCCCCTGCAATCAATTCGGTGGACANGAACCCNG-- 234
* ** * * *** * * * * * * * *
consensus_11225#1 GAAACCA--CTTCTCAG-AATAAATG-TGTTATCTATAATTGAATGACTTGTACTTCACT 294
consensus_11225#3 GAAACCTACTTTCTCAGGAATAAATG--GT------------------------------ 276
consensus_11225#0 GGCAGAA-GCGGAGA-TTAAGAAGTT-CGTGACTGAGAAGTACGGCGTCCAATTC-GATA 513
consensus_11225#2 GGCANAAAGCGGAAAATTANCAAGTTTCGTGACTGAAAATTNCGGCGTCCAATTNCAATN 294
* * * ** * **
consensus_11225#1 GGACTTGCTTAAGAGTTGACTGAAATGCTTGTCATCGTAATTACCAACCAATTTAATTTC 354
consensus_11225#3 ------------------------------------------------------------
consensus_11225#0 TGTTTTCGAAGATAAAAG---TCAATGGGTCTGACGC---TGATGATC-TTTATAAATTC 566
consensus_11225#2 TGTTTTCCNAAANANAAAAATTCAATGGGTCTGANCCC--TNATNANCCTTTATAAATTC 352
consensus_11225#1 AGAAGTGAACAATAGTAGTTGGACTATTAGAAAAGGTGGTTCATGTCTACCAACCAATTT 414
consensus_11225#3 ------------------------------------------------------------
consensus_11225#0 CTCAAAAGTAGACAACATGGTACCTTAACAAATAATATTAAGTGGAACTTCTCAAAATTT 626
consensus_11225#2 CNCC-------------------------------------------------------- 356
consensus_11225#1 AATTTGAGAAGTAAACACTAGTGGTTGGACTATTAGAGAAAGTGGTTCATGTTTGCGTCG 474
consensus_11225#3 ------------------------------------------------------------
consensus_11225#0 CTTGTAGATCGTCAAGGACAACCGGTTAAAAGATATTCTCCTACAACTGCCCCATATGAT 686
consensus_11225#2 ------------------------------------------------------------
consensus_11225#1 TAATTATTAATAAAAATTATCGGTTCTGTGGTCTGACAATTTAGTCTAGTCAGTGAACTA 534
consensus_11225#3 ------------------------------------------------------------
consensus_11225#0 ATTGAAGGAGATATCATGGAGCTTTTGGAGAAGAAGTGATCAATGGAACTTATGAGCTTT 746
consensus_11225#2 ------------------------------------------------------------
consensus_11225#1 ATAATAGGGAGTGAAGTACTTGGGCGTGTTGACTGCTTCACTTATCGTGGG--------- 585
consensus_11225#3 ------------------------------------------------------------
consensus_11225#0 GAACAAATTCTCGCTATATGACGATGGCAATCTCAAATGTTCATTGGTTGCCATTTGATG 806
consensus_11225#2 ------------------------------------------------------------
consensus_11225#1 ------------------------------------------------------------
consensus_11225#3 ------------------------------------------------------------
consensus_11225#0 AAATCAGTTTTGTGTGCACCTGATTGCAGAATTTTGTTTACCTTGCTCATTTTTTTCATT 866
consensus_11225#2 ------------------------------------------------------------
consensus_11225#1 -----------------------------
consensus_11225#3 -----------------------------
consensus_11225#0 GAAACCACTTCTCAGAATAAATGTGTTAT 895
consensus_11225#2 -----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||