These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11305#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 48 consensus length = 1011 fasta sequence [ATAAACTG-TTTTTTAAA-GGTCACAACATTACTGACGAACGAAACACTAAAGCAAAAT-GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC-AACT-GGGAAA-GAAGAGAAAATC-AAG-AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT-TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA--GTGTTCTCACTTTGTACAGTAAACTTTCAATCTTCATATGTGATTTACAGATATTTCATGAGTAAAAACTATGTGTCCACTTCAAAAATTTGCGTGGAATACTGACTGATAGAATACGCAAAAGAACATGAACATGGAAAGACCTTGAAGAGTGAACGAGTATATAACGGAAAAACTGAAATGCATTTTGTTTTCAAGGATGCATTCGGACGCGAGAGCAATAATATATATATCGACTGGGACAAAAAACGTCATTTGACGAAGAGAATATACAAAAAAAGGCTCATAATGAAAGTATTGAAATATGGATTGAACTGTACGATGAGAAAAACATTAATCACAATTCTTTTTTGGAAGTCGCACATTTTTTATATGATGAATATGCTCCGTAATAATGCTGTATACAAGAATTATACAGAATATCAGGAATAAGAATGAAAAGACAATCTTATGATGTTTTCTCTGTCGAACCCCATGGACAATATTAGTGTTGTACACTTTTGCGTGTGTGAAAGGAACAAACAATCTTACAAATAAAATTGATTAGCGAGCTGCA-CAAACATTACCATTGTAGAGCAATGGTAATATTAAGAGAAATTGTTGAGATAAGTATACAAACGAAAGACACAACACAATCATATCTAATTGAA] [-] EMBL CD078440 [ATAAACTG TTTTTTAAA GGTCACAACATTACTGACGAACGAAACACTAAAGCAAAAT GGATTTGCCAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT ATTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTCTCACTTTGTACAGTAAACTTTCAATCTTCATATGTGATTTACAGATATTTCATGAGTAAAAACTATGTGTCCACTTCAAAAATTTGCGTGGAATACTGACTGATAGAATACGCAAAAGAACATGAACATGGAAAGACCTTGAAGAGTGAACGAGTATATAACGGAAAAACTGAAATGCATTTTGTTTTCAAGGATGCATTCGGACGCGAGAGCAATAATATATATATCGACTGGGACAAAAAACGTCATTTGACGAAGAG ] [+] EMBL AA999555 [ aAAACTGTTTTTTTAAAGGGTCACAACATTACTGACGAACGANACACTAAAGCAAAATGGGATTTGACAAATCANACAAATTAGTAAGGAAAACAAACTGGGGAAAGGAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGAGGAAACAATGCAACAACACATAAGGGTGAGCATTTAGTGAAAGAATGAGGAAGGAACACTTTAAAGTGTGCCc ] [+] EMBL CD143705 [ ACCTTACTGACGAACGAAACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [-] EMBL CD138368 [ cgACTGACGAACGAAACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAGGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGAGGAAACAATGCAACAACACGTAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAA ] [+] EMBL CD159518 [ TGACGAACGAAACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC GACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATATATTTTTTAAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTCTCACTTTGTACAGTAAACTTTCAATCTTCATATGTGATTTACAGATATTTCATGAGTAAAAACTATGTGTCCACTTCAAAAATTTGCGTGGAATACTGACTGATAGAA ] [+] EMBL CD143719 [ AAACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGGGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTTAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143818 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAGCAGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAGACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GAGTTC ] [+] EMBL CD143723 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATATTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTCTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143803 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTATTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143848 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGAGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAGGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143836 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAGAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143744 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTATTAGGGAAAAC ATCT GGGAAA GAAGAGAAAATCAAAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCTTTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAGAACAGGTAATGAGAGTAACAAATACACAAAATAGTTTATGCGAATA TTTTTTTAAAAACACAACTAACTAATTGAATATTGGTATA GTGCTC ] [+] EMBL CD143812 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAACCACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143869 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCCCCTAACATACACAGAAAGTAAATTGTGAACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTGATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143768 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAGCAAGTAACGAGAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143823 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCCCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACGCATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATCGTTATA GTGTTC ] [+] EMBL CD143825 [ ACACTAAAGCAAAAT GGATTTGACAAAACTAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC GAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAGGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143717 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAGATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGATTAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143777 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAGTTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143775 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGGGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGGGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143727 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143735 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143754 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143759 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143826 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143833 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143877 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143711 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGG AAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAGATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143784 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGG AAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCGTTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143764 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGG AAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143853 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGG AAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATA TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143863 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAACC AAG AGAAAAACCTCCTAACATACACAGTAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAG AAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GGGTT ] [+] EMBL CD143747 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAGGGATGAGCTTTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGGCCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACATGTAATGAAGGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAA ] [+] EMBL CD143722 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [+] EMBL CD143704 [ ACACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTC ] [-] EMBL CD143763 [ CACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC GAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTGCGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTCT ] [-] EMBL CD143707 [ CACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATCTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGT AACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTCT ] [-] EMBL CD143879 [ CACTAAAGCAAAAT GGATTTGTCAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAACTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAAATAATTGAATATTGTTATA GTGTTCT ] [-] EMBL CD143769 [ CACTAAAGCAAAAT GGATTTGACAGAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTCT ] [-] EMBL CD143730 [ CACTAAAGCAAAAT GGATTTGTCAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAAGTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTCT ] [-] EMBL CD143829 [ CACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC GAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTCT ] [-] EMBL CD143874 [ CACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAATACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTATATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTCAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTCT ] [-] EMBL CD143731 [ CACTAAAGCAAAAT GGATTTGTCAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTCT ] [-] EMBL CD143855 [ tACTAAAGCAAAAT GGATTTGACAAAACAAACAAATTAGTAAGGAAAAC AACT GGGAAA GAAGAGAAAATC AAG AGAAAAACCCCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACGATGCAACAACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTTATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACACAAAATAATTTATGTGAATAT TTTTTTTAAAAACACAACTAACTAATTGAATAATGTTATA GTGTTCT ] [-] EMBL CD159467 [ tgAAAAACACAACTAACTAATTGAATATTGTTATA GTGTTCTCACTTTGTACAGTAAACTTTCAATCTTCATATGTGATTTACAGATATTTCATGAGTAAAAACTATGTGTCTACTTCAAAAATTTGCGTGGAATACTGACTGATAGAATACGCAAAAGAACATGAACATGGAAAGACCTTGAAGAGTGAACGAGTATATAACGGAAAAACTGAAATGCATTTTGTTTTCAAGGATGCATTCGGACGCGAGAGCAATAATATATATATCGACTGGGACAAAAAACGTCATTTGACGAAGAGAATATACAAAAAAAGGCTCATAATGAAAGTATTGAAATA ] [-] EMBL CD138267 [ gTATANNGTGTTCTCACTTNGTACAGTAAACTNTCAATCTTCATATGTGATTTACAGATATTTCATGAGTAAAAACTATGTGTCCACTTCAAAAATTTGCGTGGAATACTGACTGATAGAATACGCAAAAGAACATGAACATGGAAAGACCTTGAAGAGTGAACGAGTATATAACGGAAAAACTGAAATGCATTTTGTTTTCAAGGATGCATTCGGACGCGAGAGCAATAATATATATATCGACTGGGACAAAAAACGTCATTTGACGAAGAGAATATACAAAAAAAGGCTCATAATGAAAGTATTGAAATATGGATTGAACTGT ] [-] EMBL CD083710 [ ACGAGTATATAACGGAAAAACTGAAATGCATTTTGTTTTCAAGAATGCATTCGGACGCGAGAGCAATAATATATATATCGACTGGGACAAAAAACGTCATTTGACGAAGAGAATATACAAAAAAAGGCTCATAATGAAAGTATTGAAATATGGATTGAACTGTACGATGAGAAAAACATTAATCACAATTCTTTTTTGGAAGTCGCACATTTTTTATATGATGAATATGCTCCGTAATAATGCTGTATACAAGAATTATACAGAATATCAGGAATAAGAATGAAAAGACAATCTTATGATGTTTTCTCTGTCGAACCCCATGGACAATATTAGTGTTGTACACTTTTGCGTGTGTGAAAGGAACAAACAATCTTACAAATAAAATTGATTAGCGAGCTGCA CAAACATTACCATTGTAGAGCAATGGTAATATTAAGAGAAATTGTTGAGATAAGTATACAAACGAAAGACACAACACAATCATATCTAATTGAA] [-] EMBL CD078159 [ GCACCAAACATTACCATTGTAGAGCAATGGTAATATTAAGAGAAATTGTTGAGATAAGTATACAAACGAAAGACACAACACAATCATATCTAATTGAA] consensusID : consensus_11305#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [CATTAAAGCAAAATGGATTTGCCAAACCAACCAAATTAGTAAGGAAACCACCTGGGAAAGAAGAGAAATTCAAGAGAAAACCTTCTTACCATCCCCAGAAAGTAAATTGTGTCCGATAGGAGCGGAACCAATGCACCACCCCATAAGGATGAGCATTTAGTGAAAGAACGAGGAAGGCCCCCTTTAAGGGGTCCCTTATTTTTAAATTAATTCAGGTAACCAAGAGAAGAAACCAAGTAATGAAAGTACCAAATCCCCAAAATAATTTATGTGAATATTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATAGTGTTCT] [-] EMBL CD143799 [CATTAAAGCAAAATGGATTTGCCAAACCAACCAAATTAGTAAGGAAACCACCTGGGAAAGAAGAGAAATTCAAGAGAAAACCTTCTTACCATCCCCAGAAAGTAAATTGTGTCCGATAGGAGCGGAACCAATGCACCACCCCATAAGGATGAGCATTTAGTGAAAGAACGAGGAAGGCCCCCTTTAAGGGGTCCCTTATTTTTAAATTAATTCAGGTAACCAAGAGAAGAAACCAAGTAATGAAAGTACCAAATCCCCAAAATAATTTATGTGAATATTTTTTTAAAAACACAACTAACTAATTGAATATTGTTATAGTGTTCT] consensusID : consensus_11305#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [AGAAGAGAAAATCAAGAGAATAACCTCTTTACATACACAGAAAGTAAATTGTGTGCGATAGGAGCGGGAACAATGCATCAACACATAAGGATGAGCACTTAGTGAAAGAAAGAGGAAGGACCACTATAATGTGTTCCTTATTTGTAAAATAAGTCAAGTAGACAAGAGAAGAGAGCTAGTAATGAAAGTAACAAATACGCGAAATAATTTATGTGAATATTTTTTTTAAAAGCACAACTAACTAATTGAATATTGTTATAGTGTTCT] [-] EMBL CD143793 [AGAAGAGAAAATCAAGAGAATAACCTCTTTACATACACAGAAAGTAAATTGTGTGCGATAGGAGCGGGAACAATGCATCAACACATAAGGATGAGCACTTAGTGAAAGAAAGAGGAAGGACCACTATAATGTGTTCCTTATTTGTAAAATAAGTCAAGTAGACAAGAGAAGAGAGCTAGTAATGAAAGTAACAAATACGCGAAATAATTTATGTGAATATTTTTTTTAAAAGCACAACTAACTAATTGAATATTGTTATAGTGTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11305#0 ATAAACTGTTTTTTAAAGGTCACAACATTACTGACGAACGAAACACTAAAGCAAAATGGA 60 consensus_11305#2 ------------------------------------------------------------ consensus_11305#1 -------------------------------------------CATTAAAGCAAAATGGA 17 consensus_11305#0 TTTGACAAAACAAACAAATTAGTAAGGAAAACAACTGGGAAAGAAGAGAAAATCAAGAGA 120 consensus_11305#2 -----------------------------------------AGAAGAGAAAATCAAGAGA 19 consensus_11305#1 TTTGCCAAACCAACCAAATTAGTAAGGAAACCACCTGGGAAAGAAGAGAAATTCAAGAGA 77 ********** ******** consensus_11305#0 AAAACCTCCTAACATACACAGAAAGTAAATTGTGTACGATAGGAGCGGAAACAATGCAAC 180 consensus_11305#2 ATAACCTCTTTACATACACAGAAAGTAAATTGTGTGCGATAGGAGCGGGAACAATGCATC 79 consensus_11305#1 AAACCTTCTTACCATCCCCAGAAAGTAAATTGTGTCCGATAGGAGCGGAACCAATGCACC 137 * * * ** * *** * ***************** ************ * ******* * consensus_11305#0 AACACATAAGGATGAGCATTTAGTGAAAGAATGAGGAAGGACCACTTTAATGTGTTCCTT 240 consensus_11305#2 AACACATAAGGATGAGCACTTAGTGAAAGAAAGAGGAAGGACCACTATAATGTGTTCCTT 139 consensus_11305#1 ACCCCATAAGGATGAGCATTTAGTGAAAGAACGAGGAAGGCCCCCTTTAAGGGGTCCCTT 197 * * ************** ************ ******** ** ** *** * ** **** consensus_11305#0 ATTTTTAAATTAATTCAAGTAAACAAGAGAAGAAAACAAGTAATGAAAGTAACAAATACA 300 consensus_11305#2 ATTTGTAAAATAAGTCAAGTAGACAAGAGAAGAGAGCTAGTAATGAAAGTAACAAATACG 199 consensus_11305#1 ATTTTTAAATTAATTCAGGTAACCAAGAGAAGAAACCAAGTAATGAAAGTACCAAATCCC 257 **** **** *** *** *** ********** * * ************* ***** * consensus_11305#0 CAAAATAATTTATGTGAATATTTTTTTTAAAAACACAACTAACTAATTGAATATTGTTAT 360 consensus_11305#2 CGAAATAATTTATGTGAATATTTTTTTTAAAAGCACAACTAACTAATTGAATATTGTTAT 259 consensus_11305#1 CAAAATAATTTATGTGAATATTTTTTT-AAAAACACAACTAACTAATTGAATATTGTTAT 316 * ************************* **** *************************** consensus_11305#0 AGTGTTCTCACTTTGTACAGTAAACTTTCAATCTTCATATGTGATTTACAGATATTTCAT 420 consensus_11305#2 AGTGTTCT---------------------------------------------------- 267 consensus_11305#1 AGTGTTCT---------------------------------------------------- 324 ******** consensus_11305#0 GAGTAAAAACTATGTGTCCACTTCAAAAATTTGCGTGGAATACTGACTGATAGAATACGC 480 consensus_11305#2 ------------------------------------------------------------ consensus_11305#1 ------------------------------------------------------------ consensus_11305#0 AAAAGAACATGAACATGGAAAGACCTTGAAGAGTGAACGAGTATATAACGGAAAAACTGA 540 consensus_11305#2 ------------------------------------------------------------ consensus_11305#1 ------------------------------------------------------------ consensus_11305#0 AATGCATTTTGTTTTCAAGGATGCATTCGGACGCGAGAGCAATAATATATATATCGACTG 600 consensus_11305#2 ------------------------------------------------------------ consensus_11305#1 ------------------------------------------------------------ consensus_11305#0 GGACAAAAAACGTCATTTGACGAAGAGAATATACAAAAAAAGGCTCATAATGAAAGTATT 660 consensus_11305#2 ------------------------------------------------------------ consensus_11305#1 ------------------------------------------------------------ consensus_11305#0 GAAATATGGATTGAACTGTACGATGAGAAAAACATTAATCACAATTCTTTTTTGGAAGTC 720 consensus_11305#2 ------------------------------------------------------------ consensus_11305#1 ------------------------------------------------------------ consensus_11305#0 GCACATTTTTTATATGATGAATATGCTCCGTAATAATGCTGTATACAAGAATTATACAGA 780 consensus_11305#2 ------------------------------------------------------------ consensus_11305#1 ------------------------------------------------------------ consensus_11305#0 ATATCAGGAATAAGAATGAAAAGACAATCTTATGATGTTTTCTCTGTCGAACCCCATGGA 840 consensus_11305#2 ------------------------------------------------------------ consensus_11305#1 ------------------------------------------------------------ consensus_11305#0 CAATATTAGTGTTGTACACTTTTGCGTGTGTGAAAGGAACAAACAATCTTACAAATAAAA 900 consensus_11305#2 ------------------------------------------------------------ consensus_11305#1 ------------------------------------------------------------ consensus_11305#0 TTGATTAGCGAGCTGCACAAACATTACCATTGTAGAGCAATGGTAATATTAAGAGAAATT 960 consensus_11305#2 ------------------------------------------------------------ consensus_11305#1 ------------------------------------------------------------ consensus_11305#0 GTTGAGATAAGTATACAAACGAAAGACACAACACAATCATATCTAATTGAA 1011 consensus_11305#2 --------------------------------------------------- consensus_11305#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||