These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [AATTCCATAGGACTCCAGCCCCCTGCTCAATTTTAGGAATTTAAATGTATATGTAGTTGGTGAAGTTGGACACCCCAAGGCGAAAGTTATTCGTATTGTGCATATCTCAGATACAAGGGGAGCACATGATGCCTTCACAGTATTTATTCCACGAGGACATATTCTGATTCATTCTGGCGATTTTACATCTCACCCACCTTCACTCAGCCTCCGCTTTTCAACATGGTGTAAGAGTATAACTGGTAAGCTTCCTCGATTTAAGAAGCGTCATTCGTCACCCATTAAAAACTGGCAACAACAAATCAAAGAGATTGATAACTTTTTTGCTCAACAGCCACATGATTTTAAAATCTTTGTTCCCGGTTGCTGGGAAACATGGTATTCAGATTCATCTGGTGACTGTCCCACGCCTGAAAAAATTCAGTCTCAGCTGACATCAGCCATTTATCTTGAAGATTCCTGGTGTCAGGTTTTTGGGTTGACGATTTACGGTATTC] [+] EMBL CD160519 [AATTCCATAGGACTCCAGCCCCCTGCTCAATTTTAGGAATTTAAATGTATATGTAGTTGGTGAAGTTGGACACCCCAAGGCGAAAGTTATTCGTATTGTGCATATCTCAGATACAAGGGGAGCACATGATGCCTTCACAGTATTTATTCCACGAGGACATATTCTGATTCATTCTGGCGATTTTACATCTCACCCACCTTCACTCAGCCTCCGCTTTTCAACATGGTGTAAGAGTATAACTGGTAAGCTTCCTCGATTTAAGAAGCGTCATTCGTCACCCATTAAAAACTGGCAACAACAAATCAAAGAGATTGATAACTTTTTTGCTCAACAGCCACATGATTTTAAAATCTTTGTTCCCGGTTGCTGGGAAACATGGTATTCAGATTCATCTGGTGACTGTCCCACGCCTGAAAAAATTCAGTCTCAGCTGACATCAGCCATTTATCTTGAAGATTCCTGGTGTCAGGTTTTTGGGTTGACGATTTACGGTATTC] consensusID : consensus_1173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [GTAAAGTTCAGGACGCCATGCAGGCATATGAGTTACAACAACGTCAGTATTATCTGGAATATGCATCCATTGTTTAGAAACATCGTCAATATTGGGCAGCACAAAACCTTTAGAGTGACATGGGCTAGAGACAGTAGTGGTGGGTTTGGATGATGTTTGACCATTAGCTTTTTCAGCGAATCTCAGACAGCTAATTGAAGGCTTAAGTTTAAAATTTGTATAATGATTTAAATGCTTCTGTACGAATGCTCCATCTTCTGGTCTTAAGTCGTCAGCTGAAGTCCAAGGAATACCGTAAATCGTCAACCCAAAAACCTGACACC] [+] EMBL CD195409 [GTAAAGTTCAGGACGCCATGCAGGCATATGAGTTACAACAACGTCAGTATTATCTGGAATATGCATCCATTGTTTAGAAACATCGTCAATATTGGGCAGCACAAAACCTTTAGAGTGACATGGGCTAGAGACAGTAGTGGTGGGTTTGGATGATGTTTGACCATTAGCTTTTTCAGCGAATCTCAGACAGCTAATTGAAGGCTTAAGTTTAAAATTTGTATAATGATTTAAATGCTTCTGTACGAATGCTCCATCTTCTGGTCTTAAGTCGTCAGCTGAAGTCCAAGGAATACCGTAAATCGTCAACCCAAAAACCTGACACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1173#0 AATTCCATAGGACTCCAGCCCCCTGCTCAATTTTAGGAATTTAAATGTATATGTAGTTGG 60 consensus_1173#1 ------------------------------------------------------------ consensus_1173#0 TGAAGTTGGACACCCCAAGGCGAAAGTTATTCGTATTGTGCATATCTCAG-ATACAAGGG 119 consensus_1173#1 ---------------------------------------GTAAAGTTCAGGACGCCATGC 21 * * * **** * * * * consensus_1173#0 GAGCACATGATGCCTTCACAGTATTTATTCCACGAGGACATATTCTGATTCATTCTGGCG 179 consensus_1173#1 AGGCATATGA-GTTACAACAACGTCAGTATTATCTGGA-ATATGC--ATCCATTGTTTAG 77 *** **** * *** * * * *** **** * ** **** * * consensus_1173#0 ATTTTACATCT-CACCCACCTTCACTCAGCCTCCGCTTTTCAACATGGTGTAAGAGTATA 238 consensus_1173#1 AAACATCGTCAATATTGGGCAGCACAAAACCTTTAGAGT--GACATGGGCTAGAGACAGT 135 * * ** * * *** * *** * ****** ** * consensus_1173#0 ACTGGTAAGCTTCCTCGATTTAAGAAGCGTCATTCGTCACCCATTAAAAACTGGCAACAA 298 consensus_1173#1 AGTGGTGGGTTTGGATGATGTTTGA----CCATTAGCTTTTTCAGCGAATCTCA-GACAG 190 * **** * ** *** * ** **** * ** ** *** consensus_1173#0 CAAATCAAAGAGATTGATAACTTTTTTGCTCAACAGCCACATGATT-TTAAAATCTTTGT 357 consensus_1173#1 CTAATTGAAGG-----------CTTAAGTTTAAAATTTGTATAATGATTTAAATGCTTCT 239 * *** *** ** * * ** * ** ** ** **** ** * consensus_1173#0 TCCCGGTTGCTGGGAAACATGGTATTCAGATTCATCTGGTGACTGTCCCACGCCTGAAAA 417 consensus_1173#1 GTACGAATGCTCCATCTTCTGGTCTTAAG--TCGTCAGCTGAA-GTCCAAGGAATACCGT 296 ** **** **** ** ** ** ** * *** **** * * * consensus_1173#0 AATTCAGTCTCAGCTGACATCAGCCATTTATCTTGAAGATTCCTGGTGTCAGGTTTTTGG 477 consensus_1173#1 AAATC-GTCAACCCAAAAACCTGACACC-------------------------------- 323 ** ** *** * * * * * ** consensus_1173#0 GTTGACGATTTACGGTATTC 497 consensus_1173#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||