These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [AAAGCAATTCAAAGATAAGGGTACTAGTGCTCAAGAACGCCCGACAAAACTCGCCGTTGGAGTTTCTGGAGGTTTTGACTTTCCCCAAGATATGTATACAGTCACTGAACATTGGTCGCTAGTACGTCTTCCGCAAGGCGACTCATTTGATATCCCGAATCCAGAACCCGGACAAGGACAATCTGATATATCTCACTTAGAGATTTTGGAACTCCCTAAACGCCTGGCTACTTCGATCGCATTAATTCAACGTGCTGAGTCA] [+] EMBL CD189919 [AAAGCAATTCAAAGATAAGGGTACTAGTGCTCAAGAACGCCCGACAAAACTCGCCGTTGGAGTTTCTGGAGGTTTTGACTTTCCCCAAGATATGTATACAGTCACTGAACATTGGTCGCTAGTACGTCTTCCGCAAGGCGACTCATTTGATATCCCGAATCCAGAACCCGGACAAGGACAATCTGATATATCTCACTTAGAGATTTTGGAACTCCCTAAACGCCTGGCTACTTCGATCGCATTAATTCAACGTGCTGAGTCA] consensusID : consensus_1200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence [GAGCACTAGTACCCTTATCTTTGAATTGCTTTTCGATCTTGTATCTTAGGAAAGCACGACAGCCAGTTTTCTCATAATAAAGCCTAAGTGTTTTAGAGCCGATCGCAACGAAGTGTCGCATGCATATGTATATTCCTTTTTCTGTCTCAGGTGTCTCAAACGAAAACGGACATTCATCCTTGAATACCTTTTCCCCGTCACCA] [+] EMBL CD059759 [GAGCACTAGTACCCTTATCTTTGAATTGCTTTTCGATCTTGTATCTTAGGAAAGCACGACAGCCAGTTTTCTCATAATAAAGCCTAAGTGTTTTAGAGCCGATCGCAACGAAGTGTCGCATGCATATGTATATTCCTTTTTCTGTCTCAGGTGTCTCAAACGAAAACGGACATTCATCCTTGAATACCTTTTCCCCGTCACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1200#0 AAAGCAATTCAAAGATAAGGGTACTAGTGCTCAAGAACGCCCGACAAAACTCGCCGTTGG 60 consensus_1200#1 ------------------GAGCACTAGTACCCTTATCTTTGAATTGCTTTTCGATCTTGT 42 * * ****** * * *** *** consensus_1200#0 AGTTTCTGGAGGTTTTG-----ACTTTCCCCAAGATATGTATACAGTCACTGAACATTGG 115 consensus_1200#1 ATCTTAGGAAAGCACGACAGCCAGTTTTCTCATAATAAAGCCTAAGTGTTTTAGAGCCGA 102 * ** * * * * *** * ** *** *** * * * consensus_1200#0 TCGCTAGTACGTCTTCCGCAAGGCGACTCATTTGATATCCCGAATCCAGAACCCGGACAA 175 consensus_1200#1 TCGCAACGAAGTGTCGCATGCATATGTATATTCCTTTTTCTGTCTCAGGTGTCT---CAA 159 **** * * ** * * *** * * * * ** * * *** consensus_1200#0 GGACAATCTGATATATCTCACTTAGAGATTTTGGAACTCCCTAAACGCCTGGCTACTTCG 235 consensus_1200#1 ACGAAAACGGACAT-TCATCCTTGAATACCTTT--TCCCCGTCACCA------------- 203 ** * ** ** ** *** * * ** * ** * * * consensus_1200#0 ATCGCATTAATTCAACGTGCTGAGTCA 262 consensus_1200#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||