These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [AACCTTTTATTATGAATGATAATAATCACAAAGTCAAACAAAATTCAAAGAAAACAACTTTATATCCCCCATTAAAAATGTTGTAATTGTCAATAACCATCGTCCTTAAAATATGAAACCCATAAAACTGGGATAAAGCCCATTCAATGTAAAATCTTTCAAGGGATGAAACAAAAGGAAAAGTTTTTTTACTAGTTGTTACCCACAAGGGATCAAA] [+] EMBL CD076460 [AACCTTTTATTATGAATGATAATAATCACAAAGTCAAACAAAATTCAAAGAAAACAACTTTATATCCCCCATTAAAAATGTTGTAATTGTCAATAACCATCGTCCTTAAAATATGAAACCCATAAAACTGGGATAAAGCCCATTCAATGTAAAATCTTTCAAGGGATGAAACAAAAGGAAAAGTTTTTTTACTAGTTGTTACCCACAAGGGATCAAA] consensusID : consensus_1308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [AGCTATTATTATGAATGATAATAATCACGAAGTCAAACAAAATTCAAAGAAAACAACATTATATACACCATTAGAAATGTTGTAATTGTCGATAAGCATCGTACTTAAAATATGAAAACCATAAAACTGTGATAAAGCACATTCAATGTAAAATCTTTCAAGTGATGAAACAAAAGGAAAAGTTATTTTACTAGTTGTTACACACA] [-] EMBL CD082875 [AGCTATTATTATGAATGATAATAATCACGAAGTCAAACAAAATTCAAAGAAAACAACATTATATACACCATTAGAAATGTTGTAATTGTCGATAAGCATCGTACTTAAAATATGAAAACCATAAAACTGTGATAAAGCACATTCAATGTAAAATCTTTCAAGTGATGAAACAAAAGGAAAAGTTATTTTACTAGTTGTTACACACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1308#0 AACCTTTTATTATGAATGATAATAATCACAAAGTCAAACAAAATTCAAAGAAAACAACTT 60 consensus_1308#1 -AGCTATTATTATGAATGATAATAATCACGAAGTCAAACAAAATTCAAAGAAAACAACAT 59 * ** *********************** **************************** * consensus_1308#0 TATATCCCCCATTAAAAATGTTGTAATTGTCAATAACCATCGTCCTTAAAATATGAAACC 120 consensus_1308#1 TATATACACCATTAGAAATGTTGTAATTGTCGATAAGCATCGTACTTAAAATATGAAAAC 119 ***** * ****** **************** **** ****** ************** * consensus_1308#0 CATAAAACTGGGATAAAGCCCATTCAATGTAAAATCTTTCAAGGGATGAAACAAAAGGAA 180 consensus_1308#1 CATAAAACTGTGATAAAGCACATTCAATGTAAAATCTTTCAAGTGATGAAACAAAAGGAA 179 ********** ******** *********************** **************** consensus_1308#0 AAGTTTTTTTACTAGTTGTTACCCACAAGGGATCAAA 217 consensus_1308#1 AAGTTATTTTACTAGTTGTTACACACA---------- 206 ***** **************** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||