These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CGGCACGACGCTGAACAANAATTGTATATTTGAAAAAAATAAAACATTAACAAATTTATTAGGAGATTTAACTTTGCTAGTAGATTCCAATAATCCAGAAACTAAACAGAAAGAAGCTGAACATTTAATGAAACAATTATTTAATGAAGTAATTGAAGAACGTCAATTAAATAGTTTACGTAAACCAATTGAAGATCGATTTTTATGGTATACTAAAGAAGGTGAAAAACGTGAACAATTTAATGCGGAAAAAGCAAGAAAATTAGAAAAACAACAACGTAAACTAAGAAAATAGTCAATATTGTAAATATTTAATCTGTAAATTTAATGTTTCATAATTGTTAAAGATGTTGAAAAAGAATGTGTAATTTACTGTCTTACCTACGCCTGTTACTCCCAATGAAGCATAGGCCGCCGACCAGCATTCTCCAACCCACTCGGTCTTGAACCTTCCTTTCTAGTTCTATCCAGTTTTGGTTCATTCTTCTCATATCTGTCTCTATTTCTCGGTGTAATGTGTTCTTTGGTCCTCCACTTCTCCTTTGACATTCAGGATTCCATATGAGGGCTTGTCTTGTGACGCAGTTGGGTGAATTCCCTAGTGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCGCTGATGTGTAATTTATGCATCACTTATTAGTCAGTGAGTACAAAAATGCA] [+] EMBL CD081681 [CGGCACGACGCTGAACAANAATTGTATATTTGAAAAAAATAAAACATTAACAAATTTATTAGGAGATTTAACTTTGCTAGTAGATTCCAATAATCCAGAAACTAAACAGAAAGAAGCTGAACATTTAATGAAACAATTATTTAATGAAGTAATTGAAGAACGTCAATTAAATAGTTTACGTAAACCAATTGAAGATCGATTTTTATGGTATACTAAAGAAGGTGAAAAACGTGAACAATTTAATGCGGAAAAAGCAAGAAAATTAGAAAAACAACAACGTAAACTAAGAAAATAGTCAATATTGTAAATATTTAATCTGTAAATTTAATGTTTCATAATTGTTAAAGATGTTGAAAAAGAATGTGTAATTTACTGTCTTACCTACGCCTGTTACTCCCAATGAAGCATAGGCCGCCGACCAGCATTCTCCAACCCACTCGGTCTTGAACCTTCCTTTCTAGTTCTATCCAGTTTTGGTTCATTCTTCTCATATCTGTCTCTATTTCTCGGTGTAATGTGTTCTTTGGTCCTCCACTTCTCCTTTGACATTCAGGATTCCATATGAGGGCTTGTCTTGTGACGCAGTTGGGTGAATTCCCTAGTGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCGCTGATGTGTAATTTATGCATCACTTATTAGTCAGTGAGTACAAAAATGCA] consensusID : consensus_144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [GGGATGAGGGTTTTTATNCCGTTATGATGTGTTATAGTAATGTGTTATCAGATATATGAGTCTTTNCAAGTAAGTATAATTATTCCGAGTGAATCTCGGTTATTGGAGTTTGTTTGGACCTTGAATNCCANCTTTTATAGTTTTAGTATTATGCTTTTTTAACTTGAAAATATTTAGTTTATAATAGTNCGTTCCGTTTTCCTGATCCAGTTAAGGTAGTAGGTCACCAGTGGTATTGAATCTTATGAACTACCNNGGGGGATAAAGTATGAATNCNTTTATAACTGAATTTGATAGGTGGTGT] [+] EMBL AA559744 [GGGATGAGGGTTTTTATNCCGTTATGATGTGTTATAGTAATGTGTTATCAGATATATGAGTCTTTNCAAGTAAGTATAATTATTCCGAGTGAATCTCGGTTATTGGAGTTTGTTTGGACCTTGAATNCCANCTTTTATAGTTTTAGTATTATGCTTTTTTAACTTGAAAATATTTAGTTTATAATAGTNCGTTCCGTTTTCCTGATCCAGTTAAGGTAGTAGGTCACCAGTGGTATTGAATCTTATGAACTACCNNGGGGGATAAAGTATGAATNCNTTTATAACTGAATTTGATAGGTGGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_144#0 CGGCACGACGCTGAACAANAATTGTATATTTGAAAAAAATAAAACATTAACAAATTTATT 60 consensus_144#1 ------------------------------------------------------------ consensus_144#0 AGGAGATTTAACTTTGCTAGTAGATTCCAATAATCCAGAAACTAAACAGAAAGAAGCTGA 120 consensus_144#1 ------------------------------------------------------------ consensus_144#0 ACATTTAATGAAACAATTATTTAATGAAGTAATTGAAGAACGTCAATTAAATAGTTTACG 180 consensus_144#1 ------------------------------------------------------------ consensus_144#0 TAAACCAATTGAAGATCGATTTTTATGGTATACTAAAGAAGGTGAAAAACGTGAACAATT 240 consensus_144#1 ------------------------------------------------------------ consensus_144#0 TAATGCGGAAAAAGCAAGAAAATTAGAAAAACAACAACGTAAACTAAGAAAATAGTCAAT 300 consensus_144#1 ------------------------------------------------------------ consensus_144#0 ATTGTAAATATTTAATCTGTAAATTTAATGTTTCATAATTGTTAAAGATGTTGAAAAAGA 360 consensus_144#1 --------------------GGGATGAGGGTTTTTATNCCGTTAT-GATGTGTTATAGTA 39 * * **** **** ***** * * * consensus_144#0 ATGTGTAATTTACTGTCTTACCTACGCCTGTTACTCCCAATGAAGCATAGGC-CGCCGAC 419 consensus_144#1 ATGTGTTATCAGATATATGA-----GTCT-----TTNCAAGTAAGTATAATTATTCCGAG 89 ****** ** * * * * * ** * *** *** *** **** consensus_144#0 CAGCATTCTCCAACCCACTCGGTCTTGAACCTTCCTTTCTAGTTCTATCCAGTTTTGGT- 478 consensus_144#1 TGAATCTCGGTTATTGGAGTTTGTTTGGACCTTGAATNCCANCTTT-TATAGTTTTAGTA 148 ** * *** ***** * * * * * * ****** ** consensus_144#0 TCATTCTTCTCATATCTGTCTCTATTTCTCGGTGTAATGTGTTCTTTGGTCCTCCACTTC 538 consensus_144#1 TTATGCTTTTTTAACTTGAAAATATTTAGTT-TATAATAGTNCGTTCCGTTTTCCTGATC 207 * ** *** * * ** ***** * **** ** ** *** ** consensus_144#0 TCCTTTGACATTCAGGATTCCATATGAGGGCTTGTCTTGTGACGCAGTTGGGTGAATTCC 598 consensus_144#1 -CAGTTAAGGTAGTAGGTCACCAGTGGTATTGAATCTTATGAACTACCNNGGGGGAT--- 263 * ** * * * * * ** **** *** * ** * ** consensus_144#0 CTAGTGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCGCTGATGTGTAATTTATGCAT 658 consensus_144#1 --AAAGTATGA---ATNCNTTTATAAC-TGAATTTGATAGGTGGTGT------------- 304 * ** ** ** * ** * * ** * ** *** consensus_144#0 CACTTATTAGTCAGTGAGTACAAAAATGCA 688 consensus_144#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||