These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [CTCGGTACCCGTTCTGCGATAATTATAATTAGTCAAATTGATATGCTAACTAGGAATTCTCGGAACTGTCCAATTCGATTCAGATAAAACTCTGTGGGCACGACTGGGCATACTGCGTTTGAAATTAAAATTACGCGCGGGACCAAGTACAAAGGAATTACTAATTAGCACAATCACTACGGTTATTCAGCTAGTAGTAAAATTAAATAAGACTGTAACATAGTTCGACGTTGAGATGGAGGACATTTGTAGCTCAGGTGGATAATATCGCATTTCTGAGCATGTTCCAACGAAACTGAGGCTTCGAGGGACCAGGGCTCTCAACAGTGCAATAGCTCGGCATTTACTTGACACTGGGCACAGCATTGATATTTCTCGTGCTTTCAAAATTATCAGCAGACAAAGAAGTACGGCTGCTCTCCGGTTTGCTGAAGCGATCGCGATAAAAAAACAAACCGGATCTATTTATTCAAAAAGAGACAGCGATAAACTTATTACTACCCTGGTGATCTACTTTTTTTGTTTTAGTTTTATATTGTTTAATATTTTGTTTGTATCATATTTCTCTTCCATTACCCAATTCTTAAACCACCCTTTCACTCACATATTTCCGCTCACTTATTTCTCTTAAATTATATGAACTCTTCAAATTCTATTCAATTATTACGTAACCCA] [+] EMBL CD129128 [CTCGGTACCCGTTCTGCGATAATTATAATTAGTCAAATTGATATGCTAACTAGGAATTCTCGGAACTGTCCAATTCGATTCAGATAAAACTCTGTGGGCACGACTGGGCATACTGCGTTTGAAATTAAAATTACGCGCGGGACCAAGTACAAAGGAATTACTAATTAGCACAATCACTACGGTTATTCAGCTAGTAGTAAAATTAAATAAGACTGTAACATAGTTCGACGTTGAGATGGAGGACATTTGTAGCTCAGGTGGATAATATCGCATTTCTGAGCATGTTCCAACGAAACTGAGGCTTCGAGGGACCAGGGCTCTCAACAGTGCAATAGCTCGGCATTTACTTGACACTGGGCACAGCATTGATATTTCTCGTGCTTTCAAAATTATCAGCAGACAAAGAAGTACGGCTGCTCTCCGGTTTGCTGAAGCGATCGCGATAAAAAAACAAACCGGATCTATTTATTCAAAAAGAGACAGCGATAAACTTATTACTACCCTGGTGATCTACTTTTTTTGTTTTAGTTTTATATTGTTTAATATTTTGTTTGTATCATATTTCTCTTCCATTACCCAATTCTTAAACCACCCTTTCACTCACATATTTCCGCTCACTTATTTCTCTTAAATTATATGAACTCTTCAAATTCTATTCAATTATTACGTAACCCA] consensusID : consensus_1446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [ATATTTCTCATGCTTTCANAATTATTAGCAGGCAAAGAAGTACGACTGCTCTACGGTTTTCTGAAGCGATCGCGATAAAAAAAACTTAAACTGGATCTATGTATTCGAAAAGAGACAGTGATAAACTTATTACTACCTTGGTAATCCACTTTTTTTTGTTTTCGTTTTTTGGTTATTAGTTTTATTTTGGTTAATATTTAGTTTGTATTATATTCCTCTTCTATTACCCAATTCTTAAACCACCCTTTCACTCAAACATTTCTGCTCACTTGTTTCTTTTAAATTATGTGAACTCTTCAAATTCTATCCAATTATTACGTAACCCATCTTATCAGTTTTAATTCCATGACTCCTTTATTACCTCTAAAATTATCACACAGTTTATCATATCTGTCTCTAAACTCCACTCAACTATTACACCACCCATCCTTAATGCTTTCTTGATTCTAACACCTAACCTTTTTTCATTCCAATCCTTTACATTCACTTATGTCAATTGTTCCACACTATTTATTATCTCAATGCTAAAATTCTAATACATATTTGGTTGTAAGCGGTTGATGAGAGACCACGAAATATATAGGCCAATTCATA] [-] EMBL CD076938 [ATATTTCTCATGCTTTCANAATTATTAGCAGGCAAAGAAGTACGACTGCTCTACGGTTTTCTGAAGCGATCGCGATAAAAAAAACTTAAACTGGATCTATGTATTCGAAAAGAGACAGTGATAAACTTATTACTACCTTGGTAATCCACTTTTTTTTGTTTTCGTTTTTTGGTTATTAGTTTTATTTTGGTTAATATTTAGTTTGTATTATATTCCTCTTCTATTACCCAATTCTTAAACCACCCTTTCACTCAAACATTTCTGCTCACTTGTTTCTTTTAAATTATGTGAACTCTTCAAATTCTATCCAATTATTACGTAACCCATCTTATCAGTTTTAATTCCATGACTCCTTTATTACCTCTAAAATTATCACACAGTTTATCATATCTGTCTCTAAACTCCACTCAACTATTACACCACCCATCCTTAATGCTTTCTTGATTCTAACACCTAACCTTTTTTCATTCCAATCCTTTACATTCACTTATGTCAATTGTTCCACACTATTTATTATCTCAATGCTAAAATTCTAATACATATTTGGTTGTAAGCGGTTGATGAGAGACCACGAAATATATAGGCCAATTCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1446#0 CTCGGTACCCGTTCTGCGATAATTATAATTAGTCAAATTGATATG-CTAACTAGGAATTC 59 consensus_1446#1 -ATATTTCTCATGCTTTCANAATTATTAGCAGGCAAAGAAGTACGACTGCTCTACGGTTT 59 * * * * ** * ****** * ** **** ** * ** ** consensus_1446#0 TCGGAACTGTCCAATTCGATTCAGATAAAACTCTGTGGGCACGACTGGGCATACTGCGTT 119 consensus_1446#1 TCTGAAGCGATCG---CGAT--AAAAAAAACTTAA--------ACTGGATCTA-TGTATT 105 ** *** * * **** * * ****** ***** ** ** ** consensus_1446#0 TGAAATTAAAATTACGCGCGGGACCAAGTACAAAGGAATTACTAATTAGCACAATC--AC 177 consensus_1446#1 CGAAA--AGAGACA-GTGATAAACTTATTACTACC---TTGGTAATCCACTTTTTTTTGT 159 **** * * * * * ** * *** * ** **** * * consensus_1446#0 TACGGTTATTCAGCTAGTAGTAAAATTAAATAAGACTGTAACATAGTTCGACGTTGAGAT 237 consensus_1446#1 TTTCGTTTTTTGGTTATTAGT----TTTATTTTGGTTAATATTTAGTTTG----TATTAT 211 * *** ** * ** **** ** * * * * * ***** * * ** consensus_1446#0 GGAGGACATTTGTAGCTCAGGTGGATAATATCGCATTTCTGAGCATGTTCCAACGAAACT 297 consensus_1446#1 ATTCCTCTTCTATTACCCAATTCTTAAACCACCCTTTCACTCAAACATTTCTGCTCACTT 271 * * * * * ** * ** * * ** * ** * * * * consensus_1446#0 GAGGCTTCGAGGG-ACCAGGGCTCTCAACAGTGCAATAGCTCGGCATTTACTTGACACTG 356 consensus_1446#1 GTTTCTTTTAAATTATGTGAACTCTTCAAATTCTA----TCCAATTATTACGTAACCC-- 325 * *** * * * **** * * * * * **** * ** * consensus_1446#0 GGCACAGCATTGATATTTCTCGTGCTTTCAAAATTATCAGCAGACAAAGAAGTACGGCTG 416 consensus_1446#1 ATCTTATCAGTTTTAATTC-CATGACTCCTTTATTACCTCTAAA------------ATTA 372 * * ** * ** *** * ** * * **** * * * * consensus_1446#0 CTCTCCGGTTTGCTGAAGCGATCGCGATAAAAAAACAAACCGGATCTATTTATTCAAAAA 476 consensus_1446#1 TCACACAGTTTATCATATCTGTCTC----------TAAACTCCACTCAACTATT--ACAC 420 * **** * * ** * **** * * **** * * consensus_1446#0 GAGACAGCGATAAACTTATTACTACCCTGGTGATCTACTTTTTTT-GTTTTAGTTTTATA 535 consensus_1446#1 CACCCATCCTTAATGCTTTCTTGATTCTAACACCTAACCTTTTTTCATTCCAATCCTTTA 480 * ** * *** * * * ** ** ****** ** * * * ** consensus_1446#0 TTGTTTAATATTTTGTTTGTATCATATTTCTCTTCCATTACCCAATTCTTAAACCACCCT 595 consensus_1446#1 CATTCACTTATGTCAATTGTTCCACACTATTTAT---TATCTCAATGCTAAAATTCTAAT 537 * *** * **** ** * * * * * * **** ** *** * consensus_1446#0 TT-CACTCACATATTTCCGCTCACTTATTTCTCTTAAATTATATGAACTC-TTCAAATTC 653 consensus_1446#1 ACATATTTGGTTGTAAGCGGTTGATGAGAGACCACGAAATATATAGGCCAATTCATA--- 594 * * * * ** * * * * ** ***** * **** * consensus_1446#0 TATTCAATTATTACGTAACCCA 675 consensus_1446#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||