These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1451#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [ATCAAAGTGTAGTACAGGGACACCTTTTTCTACAAATGGCATATGATCATCACCAATCTGGTAGTGAACAGCATGGCCAAAATAGGGTTTATTATTTTCACTTGATGATTTCAATAGATTAAAAGATCTCATTCTCCTTTCCAGTTCAATGAGCATATTAAAACTTCCTTTATCCTCATAACGGATACTTTGGTATGTGAGGTTGTTTTGCACCAAGTAAATCCAATAAGACAAGAAGATCAATTTTACTCAATTCTGTTTCATTAGATGATTTGAATGTTGTACTGTTCCATTTTTTAGCTAAATGTCGAGATCCATATAAGCTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTCCATCAAAAAATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATCCCATAGTTAAGCATGTCGACAATTATCAAAATAATTGAACAAGGCATTGCTGAATCTGTTGATCCAACACAATTAGGGAGACGTTTTGATTCATAATGACCAGCCCAA] [+] EMBL CD060852 [ATCAAAGTGTAGTACAGGGACACCTTTTTCTACAAATGGCATATGATCATCACCAATCTGGTAGTGAACAGCATGGCCAAAATAGGGTTTATTATTTTCACTTGATGATTTCAATAGATTAAAAGATCTCATTCTCCTTTCCAGTTCAATGAGCATATTAAAACTTCCTTTATCCTCATAACGGATACTTTGGTATGTGAGGTTGTTTTGCACCAAGTAAATCCAATAAGACAAGAAGATCAATTTTACTCAATTCTGTTTCATTAGATGATTTGAATGTTGTACTGTTCCATTTTTTAGCTAAATGTCGAGATCCATATAAGCTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTCCATCAAAAAATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATCCCATAGTTAAGCATGTCGACAATTATCAAAATAATTGAACAAGGCATTGCTGAATCTGTTGATCCAACACAATTAGGGAGACGTTTTGATTCATAATGACCAGCCCAA] consensusID : consensus_1451#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [CTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTCCATCTTTTTATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATGCCGTAGTTAAGCATGTCGCACATTTTCAAATAATTGAACAAGGCATTGCTGAATCTGTTGATCCAACAAAATTAGGGA] [-] EMBL SM015 [CTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTCCATCTTTTTATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATGCCGTAGTTAAGCATGTCGCACATTTTCAAATAATTGAACAAGGCATTGCTGAATCTGTTGATCCAACAAAATTAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1451#0 ATCAAAGTGTAGTACAGGGACACCTTTTTCTACAAATGGCATATGATCATCACCAATCTG 60 consensus_1451#1 ------------------------------------------------------------ consensus_1451#0 GTAGTGAACAGCATGGCCAAAATAGGGTTTATTATTTTCACTTGATGATTTCAATAGATT 120 consensus_1451#1 ------------------------------------------------------------ consensus_1451#0 AAAAGATCTCATTCTCCTTTCCAGTTCAATGAGCATATTAAAACTTCCTTTATCCTCATA 180 consensus_1451#1 ------------------------------------------------------------ consensus_1451#0 ACGGATACTTTGGTATGTGAGGTTGTTTTGCACCAAGTAAATCCAATAAGACAAGAAGAT 240 consensus_1451#1 ------------------------------------------------------------ consensus_1451#0 CAATTTTACTCAATTCTGTTTCATTAGATGATTTGAATGTTGTACTGTTCCATTTTTTAG 300 consensus_1451#1 ------------------------------------------------------------ consensus_1451#0 CTAAATGTCGAGATCCATATAAGCTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTC 360 consensus_1451#1 -----------------------CTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTC 37 ************************************* consensus_1451#0 CATCAAAAAATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATCCCATAGT 420 consensus_1451#1 CATCTTTTTATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATGCCGTAGT 97 **** ******************************************* ** **** consensus_1451#0 TAAGCATGTCGACAATTATCAAAATAATTGAACAAGGCATTGCTGAATCTGTTGATCCAA 480 consensus_1451#1 TAAGCATGTCGCACATTTTCAAA-TAATTGAACAAGGCATTGCTGAATCTGTTGATCCAA 156 *********** *** ***** ************************************ consensus_1451#0 CACAATTAGGGAGACGTTTTGATTCATAATGACCAGCCCAA 521 consensus_1451#1 CAAAATTAGGGA----------------------------- 168 ** ********* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||