These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_147#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGCACTCCATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCATTGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTAAAACGTCTGTCTGTCCACCCCCCATAGCAACGGTAATCTATTAATCCTAGGAATTTCAGAAAATATGTTTTAAAGAAAAAATTAAACCATCCTTTTATCCTATTCACCCAGGAAAACCATGGTTCATTCCAACAAATTTTCCCAATGGCACTGTATTTAAAAAACACTTGTAAACAAAT] [+] EMBL AI444565 [AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGCACTCCATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCATTGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTAAAACGTCTGTCTGTCCACCCCCCATAGCAACGGTAATCTATTAATCCTAGGAATTTCAGAAAATATGTTTTAAAGAAAAAATTAAACCATCCTTTTATCCTATTCACCCAGGAAAACCATGGTTCATTCCAACAAATTTTCCCAATGGCACTGTATTTAAAAAACACTTGTAAACAAAT] consensusID : consensus_147#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGCACTGACATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCATTGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTAAAACGGTCTGGTCTGTCCACCCCCCATAGCACGGGAATCTATTAATCGTAGGGAATTCAGGAAATATGTTTAAAAGAAAAATTAAACGATCGTTTATCGTACAGCACGAGAAAACAAGGGTCAGATCGATTATATTTCGTATGGGGTGGT] [+] EMBL AI820483 [AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGCACTGACATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCATTGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTAAAACGGTCTGGTCTGTCCACCCCCCATAGCACGGGAATCTATTAATCGTAGGGAATTCAGGAAATATGTTTAAAAGAAAAATTAAACGATCGTTTATCGTACAGCACGAGAAAACAAGGGTCAGATCGATTATATTTCGTATGGGGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_147#0 AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGC 60 consensus_147#1 AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGC 60 ************************************************************ consensus_147#0 ACTC-CATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCAT 119 consensus_147#1 ACTGACATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCAT 120 *** ******************************************************* consensus_147#0 TGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTA 179 consensus_147#1 TGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTA 180 ************************************************************ consensus_147#0 AAACG-TCTG-TCTGTCCACCCCCCATAGCAACGGTAATCTATTAATCCTAGGAATTTCA 237 consensus_147#1 AAACGGTCTGGTCTGTCCACCCCCCATAGCA-CGGGAATCTATTAATCGTAGGGAATTCA 239 ***** **** ******************** *** ************ **** * **** consensus_147#0 GAAAATATGTTTTAAAGAAAAAATTAAACCATCCTTTTATCCTATTCACCCAGGAAAACC 297 consensus_147#1 GGAAATATGTTTAAAAGAAAAA-TTAAACGATCGTTT-ATCGTACA-GCACGAGAAAACA 296 * ********** ********* ****** *** *** *** ** * * ****** consensus_147#0 ATGGTTCATTCCAACAAATTTTCCCAATGGCACTGTATTTAAAAAACACTTGTAAACAAA 357 consensus_147#1 AGGGTCAGATCGATTATATTTCGT--ATGGGGTGGT------------------------ 330 * *** ** * * **** **** ** consensus_147#0 T 358 consensus_147#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||