These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATAAGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCAACATATACAAATCCAAAACAAAAAGAAAGAGGTCATCAATTGACATTATTTTCAAAAGTGGTTCAAACAGGAGAATTAGAAAAGTAATAACAACATAAGTTTATCAAAACGGGACTTATTATAAAGAGCGAAAACGGAAAGGGATAGGGAAAACACTCATTGGCTATTCATTATATATATATATATATATATATATATATATGTCTGATTTTACTGGACAGAAATAAATAGGGAAGATTAAGAAAGGCAATAATAAATATACACAATAAATGTAGAATCGCAAATTTCAATTCATATAAAATCATCATCATTATCGTTTGCGTTTTCCATAATGACTAGTTGAAAATAATGGTTGTGATTGTTGGTGATTGACAGGACTTAAATTTTCACTGTCAATATTATTACTGTTATTTAAGGAATTAATAATAGTATTATTATTGTTACTATTGCTACTATTAATGATATTATC] [+] EMBL CD077272 [AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATAAGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCAACATATACAAATCCAAAACAAAAAGAAAGAGGTCATCAATTGACATTATTTTCAAAAGTGGTTCAAACAGGAGAATTAGAAAAGTAATAACAACATAAGTTTATCAAAACGGGACTTATTATAAAGAGCGAAAACGGAAAGGGATAGGGAAAACACTCATTGGCTATTCATTATATATATATATATATATATATATATATATGTCTGATTTTACTGGACAGAAATAAATAGGGAAGATTAAGAAAGGCAATAATAAATATACACAATAAATGTAGAATCGCAAATTTCAATTCATATAAAATCATCATCATTATCGTTTGCGTTTTCCATAATGACTAGTTGAAAATAATGGTTGTGATTGTTGGTGATTGACAGGACTTAAATTTTCACTGTCAATATTATTACTGTTATTTAAGGAATTAATAATAGTATTATTATTGTTACTATTGCTACTATTAATGATATTATC] consensusID : consensus_1520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATAAGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCCACATATACCAATCCAAACCAAAAGGAAGAGGTCATCAATTGACATTATTTTCCAAAGTGGTTCAACAGGAGGATTAGAAAGTATTACAACCTAAGTTTTTCAAACCGGGCCTTTTTTAAGGGCCGAACCGGAAGGGGATGTGACACCCCTG] [+] EMBL AI882655 [AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATAAGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCCACATATACCAATCCAAACCAAAAGGAAGAGGTCATCAATTGACATTATTTTCCAAAGTGGTTCAACAGGAGGATTAGAAAGTATTACAACCTAAGTTTTTCAAACCGGGCCTTTTTTAAGGGCCGAACCGGAAGGGGATGTGACACCCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1520#0 AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATA 60 consensus_1520#1 AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATA 60 ************************************************************ consensus_1520#0 AGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCAACATATACAAATCC 120 consensus_1520#1 AGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCCACATATACCAATCC 120 ********************************************* ******** ***** consensus_1520#0 AAAACAAAAAGAAAGAGGTCATCAATTGACATTATTTTCAAAAGTGGTTCAAACAGGAGA 180 consensus_1520#1 AAACCAAAAGGAA-GAGGTCATCAATTGACATTATTTTCCAAAGTGGTTCAA-CAGGAGG 178 *** ***** *** ************************* ************ ****** consensus_1520#0 ATTAGAAAAGTAATAACAACATAAGTTTATCAAAACGGGACTTATTATAAAGAGCGAAAA 240 consensus_1520#1 ATTAGAAAGT--ATTACAACCTAAGTTTTTCAAACCGGGCCT--TTTTTAAGGGCCGAAC 234 ******** ** ***** ******* ***** **** ** ** * *** ** ** consensus_1520#0 CGGAAAGGGATAGGGAAAACACTCATTGGCTATTCATTATATATATATATATATATATAT 300 consensus_1520#1 CGGAAGGGGAT-GTGACACCCCTG------------------------------------ 257 ***** ***** * ** * * ** consensus_1520#0 ATATATATGTCTGATTTTACTGGACAGAAATAAATAGGGAAGATTAAGAAAGGCAATAAT 360 consensus_1520#1 ------------------------------------------------------------ consensus_1520#0 AAATATACACAATAAATGTAGAATCGCAAATTTCAATTCATATAAAATCATCATCATTAT 420 consensus_1520#1 ------------------------------------------------------------ consensus_1520#0 CGTTTGCGTTTTCCATAATGACTAGTTGAAAATAATGGTTGTGATTGTTGGTGATTGACA 480 consensus_1520#1 ------------------------------------------------------------ consensus_1520#0 GGACTTAAATTTTCACTGTCAATATTATTACTGTTATTTAAGGAATTAATAATAGTATTA 540 consensus_1520#1 ------------------------------------------------------------ consensus_1520#0 TTATTGTTACTATTGCTACTATTAATGATATTATC 575 consensus_1520#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||