These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [TTTGATAGAAAATATAAAACTACTTGGCAATGTGTAGTTGGCAAGAATTTTTGTGGGTCCTTCACTCATGAAACAGGTGATTTCATTCACTTTAAGCTAGAAAATTTGACGTTTTTGCTTTTTCGATCAATTAAACCAAAAACACAAGTACTTCATACTGATTCGAGTTCGACTCAATGAACCCTTTCAAATCTTGATGCTGCTTTTAGAAATTACTCATTTCTGAAATGTTACTAAATTGGAAAAAAATTATAACTACTGTGCAAATTAGTTTTTGTCGGTTTTTTTTAATAAAAATTAATTGAT] [+] EMBL SMAA43873 [TTTGATAGAAAATATAAAACTACTTGGCAATGTGTAGTTGGCAAGAATTTTTGTGGGTCCTTCACTCATGAAACAGGTGATTTCATTCACTTTAAGCTAGAAAATTTGACGTTTTTGCTTTTTCGATCAATTAAACCAAAAACACAAGTACTTCATACTGATTCGAGTTCGACTCAATGAACCCTTTCAAATCTTGATGCTGCTTTTAGAAATTACTCATTTCTGAAATGTTACTAAATTGGAAAAAAATTATAACTACTGTGCAAATTAGTTTTTGTCGGTTTTTTTTAATAAAAATTAATTGAT] consensusID : consensus_1667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [ATTGGAGTAGTNTNGTTCATTTNATCAAGAGAAATTTGGNTAGNTTTTTTNAAACTACTTGGCAATGTGTNGTCGGGCAAGAATTTTGGTGGGNCCTCCACTCATGAAACAGGTGGATTTCATTCACTTTAAGCTAGAAAATTTGACGTTTTGGNTTTTTTCGATCAAATTAACNCANAAACACAAGTTCTNCATNCTGATTCGGGTTNCGACCTCANTGAAACCCCTTCCAAANTCTNGATGCTNCTTTCAGAAAATNTCCTCAATNTCCTNCAACNTTT] [+] EMBL SM363 [ATTGGAGTAGTNTNGTTCATTTNATCAAGAGAAATTTGGNTAGNTTTTTTNAAACTACTTGGCAATGTGTNGTCGGGCAAGAATTTTGGTGGGNCCTCCACTCATGAAACAGGTGGATTTCATTCACTTTAAGCTAGAAAATTTGACGTTTTGGNTTTTTTCGATCAAATTAACNCANAAACACAAGTTCTNCATNCTGATTCGGGTTNCGACCTCANTGAAACCCCTTCCAAANTCTNGATGCTNCTTTCAGAAAATNTCCTCAATNTCCTNCAACNTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1667#0 -----------------------------------TTTGATAGAAAATATAAAACTACTT 25 consensus_1667#1 ATTGGAGTAGTNTNGTTCATTTNATCAAGAGAAATTTGGNTAGNTTTTTTNAAACTACTT 60 ** * *** * * ********* consensus_1667#0 GGCAATGTGTAGTTGG-CAAGAATTTTTGTGGGTCCTTCACTCATGAAACAGGTG-ATTT 83 consensus_1667#1 GGCAATGTGTNGTCGGGCAAGAATTTTGGTGGGNCCTCCACTCATGAAACAGGTGGATTT 120 ********** ** ** ********** ***** *** ***************** **** consensus_1667#0 CATTCACTTTAAGCTAGAAAATTTGACGTTTTTGCTTTTT-CGATCAA-TTAAACCAAAA 141 consensus_1667#1 CATTCACTTTAAGCTAGAAAATTTGACGTTTTGGNTTTTTTCGATCAAATTAACNCANAA 180 ******************************** * ***** ******* **** ** ** consensus_1667#0 ACACAAGTACTTCATACTGATTCGAGTTCGA--CTCAATGAA--CCCTTTCAAAT-CTTG 196 consensus_1667#1 ACACAAGTTCTNCATNCTGATTCGGGTTNCGACCTCANTGAAACCCCTTCCAAANTCTNG 240 ******** ** *** ******** *** **** **** ***** **** ** * consensus_1667#0 ATGCTGCTTTTAGAAATTACTCATTTCTGAAATGTTACTAAATTGGAAAAAAATTATAAC 256 consensus_1667#1 ATGCTNCTTTCAGAAAATN----TCCTCAATNTCCTNCAACNTTT--------------- 281 ***** **** ***** * * * * * * * ** consensus_1667#0 TACTGTGCAAATTAGTTTTTGTCGGTTTTTTTTAATAAAAATTAATTGAT 306 consensus_1667#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||