These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [TGATAGGCAATCCGGNAGTGTAGAGAATAGCTCAATCGGTGAGATGTGAAGCCATTGGTAATTTCATAAATTATGAAACCATTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAGAACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGACCTCAAGATTACGGGACATTTACGTAAGGATTGGAAAATTGTGAATTTAAGGGACTTGGGTTTATCGCCGTACATGCAATCTTCTGGTAAATACAGGATGGGAAGAGACCTTCATGTGGTGTTCGACTCTGCTGGTCGTGAAGTTTTGTGTCAATTTTGAAAGGCGTACTAAAGAAGTAAATCAACCTTATATAGGGTCTCTATTCGAACACTTGTAGACGAGTCAGAACTTGTGGTGAACTGTCGTCGG] [+] EMBL CD127053 [TGATAGGCAATCCGGNAGTGTAGAGAATAGCTCAATCGGTGAGATGTGAAGCCATTGGTAATTTCATAAATTATGAAACCATTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAGAACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGACCTCAAGATTACGGGACATTTACGTAAGGATTGGAAAATTGTGAATTTAAGGGACTTGGGTTTATCGCCGTACATGCAATCTTCTGGTAAATACAGGATGGGAAGAGACCTTCATGTGGTGTTCGACTCTGCTGGTCGTGAAGTTTTGTGTCAATTTTGAAAGGCGTACTAAAGAAGTAAATCAACCTTATATAGGGTCTCTATTCGAACACTTGTAGACGAGTCAGAACTTGTGGTGAACTGTCGTCGG] consensusID : consensus_1722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence [CGCGGTCGCTCTAGGGATCCCCAAACCCTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAGAACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGACCTCAAGATTACGG] [+] EMBL CD062186 [CGCGGTCGCTCTAGGGATCCCCAAACCCTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAGAACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGACCTCAAGATTACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1722#0 TGATAGGCAATCCGGNAGTGTAGAGAATAGCTCAATCGGTGAGATGTGAAGCCATTGGTA 60 consensus_1722#1 -----------------------------------------------------CGCGGTC 7 *** consensus_1722#0 ATTTCATAAATTATGAAACCATTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAG 120 consensus_1722#1 GCTCTAGGGATCCCCAAACC-CTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAG 66 * * ** ***** ************************************** consensus_1722#0 AACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGAC 180 consensus_1722#1 AACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGAC 126 ************************************************************ consensus_1722#0 CTCAAGATTACGGGACATTTACGTAAGGATTGGAAAATTGTGAATTTAAGGGACTTGGGT 240 consensus_1722#1 CTCAAGATTACGG----------------------------------------------- 139 ************* consensus_1722#0 TTATCGCCGTACATGCAATCTTCTGGTAAATACAGGATGGGAAGAGACCTTCATGTGGTG 300 consensus_1722#1 ------------------------------------------------------------ consensus_1722#0 TTCGACTCTGCTGGTCGTGAAGTTTTGTGTCAATTTTGAAAGGCGTACTAAAGAAGTAAA 360 consensus_1722#1 ------------------------------------------------------------ consensus_1722#0 TCAACCTTATATAGGGTCTCTATTCGAACACTTGTAGACGAGTCAGAACTTGTGGTGAAC 420 consensus_1722#1 ------------------------------------------------------------ consensus_1722#0 TGTCGTCGG 429 consensus_1722#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||