cluster # 1804

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Schistosoma mansoni
cluster # 1804 cluster # 1804 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1804#0 length = 175 sequences # 1

consensus_1804#1 length = 158 sequences # 1

consensusID : consensus_1804#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 175
fasta sequence

                              [GCTCCTATCGTGAACTCAAAGTGCCAAAACACCAACACACCCTACAGTTATGCTGACGGATATTGGATTCCCAAAAAATTCTTTCTGCACAAATATTTTGAAGATTGTCTGTATAAGAGGGATTTTGGAGAATGTTAAATGATACTAAGATCGCGAACGAACCTATGTTAGGGGT]

[+] EMBL CD062591             [GCTCCTATCGTGAACTCAAAGTGCCAAAACACCAACACACCCTACAGTTATGCTGACGGATATTGGATTCCCAAAAAATTCTTTCTGCACAAATATTTTGAAGATTGTCTGTATAAGAGGGATTTTGGAGAATGTTAAATGATACTAAGATCGCGAACGAACCTATGTTAGGGGT]




>consensus_1804#0
GCTCCTATCGTGAACTCAAAGTGCCAAAACACCAACACACCCTACAGTTATGCTGACGGA
TATTGGATTCCCAAAAAATTCTTTCTGCACAAATATTTTGAAGATTGTCTGTATAAGAGG
GATTTTGGAGAATGTTAAATGATACTAAGATCGCGAACGAACCTATGTTAGGGGT

consensusID : consensus_1804#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 158
fasta sequence

                              [ATCATTTAACATTCTCCAAAATCCCTCTTATACAGACTATCTTCAAAATATTTGTGCAGAAAGAATATTTGTGCAAAACATTTATCGTCAGCAATATTGAATGGTTGTCGCTGTATTTCGCAAATTAATGGAAGGTTTTGTCGTACCATTTGACGATT]

[+] EMBL CD062725             [ATCATTTAACATTCTCCAAAATCCCTCTTATACAGACTATCTTCAAAATATTTGTGCAGAAAGAATATTTGTGCAAAACATTTATCGTCAGCAATATTGAATGGTTGTCGCTGTATTTCGCAAATTAATGGAAGGTTTTGTCGTACCATTTGACGATT]




>consensus_1804#1
ATCATTTAACATTCTCCAAAATCCCTCTTATACAGACTATCTTCAAAATATTTGTGCAGA
AAGAATATTTGTGCAAAACATTTATCGTCAGCAATATTGAATGGTTGTCGCTGTATTTCG
CAAATTAATGGAAGGTTTTGTCGTACCATTTGACGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1804#0      GCTCCTATCGTGAACTCAAAGTGCCAAAACACCAACACACCCTACAGTTATGCTGACGGA 60
consensus_1804#1      ---------ATCATTTAACATTCTCCAAAATCCCTCTTA---TACAGACTATCTTCAAAA 48
                                * *  * * * *  * ***  **  *  *   *****     **     *

consensus_1804#0      TATTGGATTCCCAAAAAATTCTTTCTGCACAAATATTTTGAAGATTGTCTGTATAAGAGG 120
consensus_1804#1      TATTTG--TGCAGAAAGAATATTTGTGCA-AAACATTT--ATCGTCAGCAATATTGAATG 103
                      **** *  * *  *** * * *** **** *** ****  *   *   *  ***   * *

consensus_1804#0      GATTTTGGAGAATGTTAAATGATACTAAGATCGCGAACGAACCTATGTTAGGGGT 175
consensus_1804#1      GTTGTCGCTGTATTTCGCAAATTAATGGAAGGTTTTGTCGTACCATTTGACGATT 158
                      * * * *  * ** *   *   ** *   *            * ** * * *  *