These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence [AATAATAGGTTTTGACTAGCTGAAGAATCCAGAACATGCATTTCATTCTATTTGGGAATCTGCAGTATGAACATCAACACCGGGATCCCATATACTACATCCAGCTGATGATCCCCAAATAGAATGAAACATAGGCCCTCGATTGCACTACTGCTGACAATCTAAATATCGTCCGAATGGTTTTTAGGATCATTCTTTTGGATCAGTCCTCTTCATATGTATTGTTTATTATATAAAGCGACAATTAAATAGCTATCAGTTCTTCAACGATAAATGAAATAATGACACAATGACTTTCCACAATAATTGTTTCAACTTTAATCACAAAATCTTAGCAAATGATAATTTNCACGGTTTGGGGCTCTTCATAAAAAANTCTCATGTTACTATTGTAATTTTCAGTTTTCGAAACGTCCGATAATGATGTTGATTTGTCAACATCCTCTAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTACTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGAATCTGACCAATACATCTACTAATTATTACAACTAGTTACTTTTACTACTACATCAACTTCAAATCGTTTAAATTCCTAATCAACTGCTAGTGATACGTTGTTTGGAAACCGTTTATTGCTTACACCAAAACCCCATTCATACTTCTAATAAGGCAGGGGTCAGTCCAACTCAAAATTCGGGGCACACTTTCACAAAGTCCCCTTCACAAATTTGTTGCAAAATTGGTTTTGTTAAAAAA] [+] EMBL CD079858 [AATAATAGGTTTTGACTAGCTGAAGAATCCAGAACATGCATTTCATTCTATTTGGGAATCTGCAGTATGAACATCAACACCGGGATCCCATATACTACATCCAGCTGATGATCCCCAAATAGAATGAAACATAGGCCCTCGATTGCACTACTGCTGACAATCTAAATATCGTCCGAATGGTTTTTAGGATCATTCTTTTGGATCAGTCCTCTTCATATGTATTGTTTATTATATAAAGCGACAATTAAATAGCTATCAGTTCTTCAACGATAAATGAAATAATGACACAATGACTTTCCACAATAATTGTTTCAACTTTAATCACAAAATCTTAGCAAATGATAATTTNCACGGTTTGGGGCTCTTCATAAAAAANTCTCATGTTACTATTGTAATTTTCAGTTTTCGAAACGTCCGATAATGATGTTGATTTGTCAACATCCTCTAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTACTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGAATCTGACCAATACATCTACTAATTATTACAACTAGTTACTTTTACTACTACATCAACTTCAAATCGTTTAAATTCCTAATCAACTGCTAGTGATACGTTGTTTGGAAACCGTTTATTGCTTACACCAAAACCCCATTCATACTTCTAATAAGGCAGGGGTCAGTCCAACTCAAAATTCGGGGCACACTTTCACAAAGTCCCCTTCACAAATTTGTTGCAAAATTGGTTTTGTTAAAAAA] consensusID : consensus_1887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [TAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTACTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGAATCTGACCAATACATCTACTAAATTATTACAACTAGTTACTTCTACTACTACATCAACCTCAGATCGTTTAAATCCTAATCAAACTGCTAGTGATCGTTTGTTTGGTAAGCGTCTTATTGCTTACAACAGAAACGCATCACATACTCCTAATAATGCAGTGTCAAGTACAACTCAGAATTCAGGGACAACTCATCACCAGAGTCCAGCTCCAACAAATACATCAATTAATACTGCAACTCCTTATCGATATGCTGTTGTACGAGGTTCAGCAGATGGAAAACAATATGTTTTGATTAGCAATCCTCGTATGGTTGATCAAACAGTTCATGAACAACCGGTTGCAACGTTGACTACAACTGTAAATGATGC] [-] EMBL CD117721 [TAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTACTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGAATCTGACCAATACATCTACTAAATTATTACAACTAGTTACTTCTACTACTACATCAACCTCAGATCGTTTAAATCCTAATCAAACTGCTAGTGATCGTTTGTTTGGTAAGCGTCTTATTGCTTACAACAGAAACGCATCACATACTCCTAATAATGCAGTGTCAAGTACAACTCAGAATTCAGGGACAACTCATCACCAGAGTCCAGCTCCAACAAATACATCAATTAATACTGCAACTCCTTATCGATATGCTGTTGTACGAGGTTCAGCAGATGGAAAACAATATGTTTTGATTAGCAATCCTCGTATGGTTGATCAAACAGTTCATGAACAACCGGTTGCAACGTTGACTACAACTGTAAATGATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1887#0 AATAATAGGTTTTGACTAGCTGAAGAATCCAGAACATGCATTTCATTCTATTTGGGAATC 60 consensus_1887#1 ------------------------------------------------------------ consensus_1887#0 TGCAGTATGAACATCAACACCGGGATCCCATATACTACATCCAGCTGATGATCCCCAAAT 120 consensus_1887#1 ------------------------------------------------------------ consensus_1887#0 AGAATGAAACATAGGCCCTCGATTGCACTACTGCTGACAATCTAAATATCGTCCGAATGG 180 consensus_1887#1 ------------------------------------------------------------ consensus_1887#0 TTTTTAGGATCATTCTTTTGGATCAGTCCTCTTCATATGTATTGTTTATTATATAAAGCG 240 consensus_1887#1 ------------------------------------------------------------ consensus_1887#0 ACAATTAAATAGCTATCAGTTCTTCAACGATAAATGAAATAATGACACAATGACTTTCCA 300 consensus_1887#1 ------------------------------------------------------------ consensus_1887#0 CAATAATTGTTTCAACTTTAATCACAAAATCTTAGCAAATGATAATTTNCACGGTTTGGG 360 consensus_1887#1 ------------------------------------------------------------ consensus_1887#0 GCTCTTCATAAAAAANTCTCATGTTACTATTGTAATTTTCAGTTTTCGAAACGTCCGATA 420 consensus_1887#1 ------------------------------------------------------------ consensus_1887#0 ATGATGTTGATTTGTCAACATCCTCTAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTA 480 consensus_1887#1 -------------------------TAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTA 35 *********************************** consensus_1887#0 CTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGA 540 consensus_1887#1 CTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGA 95 ************************************************************ consensus_1887#0 ATCTGACCAATACATCTACTAA-TTATTACAACTAGTTACTTTTACTACTACATCAACTT 599 consensus_1887#1 ATCTGACCAATACATCTACTAAATTATTACAACTAGTTACTTCTACTACTACATCAACCT 155 ********************** ******************* *************** * consensus_1887#0 CAAATCGTTTAAATTCCTAATCAACTGCTAGTGATACGTTGTTTGGAAACCGT-TTATTG 658 consensus_1887#1 CAGATCGTTTAAATCCTAATCAAACTGCTAGTGATCGTTTGTTTGGTAAGCGTCTTATTG 215 ** *********** * * ************* ******** ** *** ****** consensus_1887#0 CTTACACCAAAACCCCATT-CATACTTCTAATAAGGCAGGGGTCAGTCCAACTCAAAATT 717 consensus_1887#1 CTTACAACAGAAACGCATCACATACTCCTAATAATGCAGTGTCAAGTACAACTCAGAATT 275 ****** ** ** * *** ****** ******* **** * *** ******* **** consensus_1887#0 CGGGGCACACTT-TCAC-AAAGTCCCCTTC--ACAAATTTGTTG--CAAAATTGGTTTTG 771 consensus_1887#1 CAGGGACAACTCATCACCAGAGTCCAGCTCCAACAAATACATCAATTAATACTGCAACTC 335 * *** *** **** * ***** ** ****** * ** * ** * consensus_1887#0 TTAAAAAA---------------------------------------------------- 779 consensus_1887#1 CTTATCGATATGCTGTTGTACGAGGTTCAGCAGATGGAAAACAATATGTTTTGATTAGCA 395 * * * consensus_1887#0 ------------------------------------------------------------ consensus_1887#1 ATCCTCGTATGGTTGATCAAACAGTTCATGAACAACCGGTTGCAACGTTGACTACAACTG 455 consensus_1887#0 ---------- consensus_1887#1 TAAATGATGC 465 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||