These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [CAAAGTCTCCTTTATTTGTTTTCTTCTTGGACACACAGCTACATTTACAATTCTCCAGCTTCCTTTTGCAGGTAGCTGTAGCTACCTGCAGTAGTACAATTAAACTACTCCTCTCCGCAACAATGTGAAGGGAAAATCACTTTGTGCTATTTTCTGGCCATGATTTGTTAAACGATGCGATTGGATACAAAATCTTGCACT] [+] EMBL CD119491 [CAAAGTCTCCTTTATTTGTTTTCTTCTTGGACACACAGCTACATTTACAATTCTCCAGCTTCCTTTTGCAGGTAGCTGTAGCTACCTGCAGTAGTACAATTAAACTACTCCTCTCCGCAACAATGTGAAGGGAAAATCACTTTGTGCTATTTTCTGGCCATGATTTGTTAAACGATGCGATTGGATACAAAATCTTGCACT] consensusID : consensus_1893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [CAAAGTCTCCCTTATTTGTTTTTTTCTTGGACACACAGCTACATTTACATTCTCCAGCTTCCTTTGCAGGTAGCTGTAGCTACCTGCAGGAGTACATTAACTACTCCTCTCCAGCAACAATGTGAAGGGAAACCATTTGTGCTATTTTATGGCCATGAAGGCAAAACAAAACAAATAAAAACAAAATCT] [+] EMBL CD119303 [CAAAGTCTCCCTTATTTGTTTTTTTCTTGGACACACAGCTACATTTACATTCTCCAGCTTCCTTTGCAGGTAGCTGTAGCTACCTGCAGGAGTACATTAACTACTCCTCTCCAGCAACAATGTGAAGGGAAACCATTTGTGCTATTTTATGGCCATGAAGGCAAAACAAAACAAATAAAAACAAAATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1893#0 CAAAGTCTCCTTTATTTGTTTTCTTCTTGGACACACAGCTACATTTACAATTCTCCAGCT 60 consensus_1893#1 CAAAGTCTCCCTTATTTGTTTTTTTCTTGGACACACAGCTACATTTACA-TTCTCCAGCT 59 ********** *********** ************************** ********** consensus_1893#0 TCCTTTTGCAGGTAGCTGTAGCTACCTGCAGTAGTACAATTAAACTACTCCTCTCC-GCA 119 consensus_1893#1 TCCTTT-GCAGGTAGCTGTAGCTACCTGCAGGAGTACATT--AACTACTCCTCTCCAGCA 116 ****** ************************ ****** * ************** *** consensus_1893#0 ACAATGTGAAGGGAAAATCACTTTGTGCTATTTTCTGGCCATGATTTGTTAAACGATGCG 179 consensus_1893#1 ACAATGTGAAGGGAAA--CCATTTGTGCTATTTTATGGCCATGAAG-GCAAAACAAAACA 173 **************** * ************* ********* * **** * * consensus_1893#0 ATTGGATACAAAATCTTGCACT 201 consensus_1893#1 AATAAAAACAAAATCT------ 189 * * * ********* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||