These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1982#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [TGCTTTTAGATAGAGGATTTTCTTTATCTAAAGTTGGATTTTGGACTGGTGTTGTTGGACAGTTGGCATCTATAATTGGGTCTACATCTGGATATTATATTCAGAAAAAGCTCAGATCTCCACTGACTTCAGTTTTAAGCCTGATGATAATTCGTGCATGTCTACAGTTCCCTTTAACAATGATTGCTTTCAAATCTATTTGGACAAGTGCACCTAACGTTTCTTTCTGGATAGGTTGTTTATTGATGGATAGTTTACTAGTTGTAAGTGGAGGGATTACAACAATTATATTCACATTGATGATGCATTGTACATGTTCTGAAACATCTAAAGCTTATCAAGCAACTCATTATTCCATATTAAGTACAGCAGAATTATTGGGAAAACTTTTATTTGGTACAATAGCTGCATACTTTACAGATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTCTATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCGATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAATAAATGAAATTGGATTTTNNNNNANAAAANN] [+] EMBL CD080633 [TGCTTTTAGATAGAGGATTTTCTTTATCTAAAGTTGGATTTTGGACTGGTGTTGTTGGACAGTTGGCATCTATAATTGGGTCTACATCTGGATATTATATTCAGAAAAAGCTCAGATCTCCACTGACTTCAGTTTTAAGCCTGATGATAATTCGTGCATGTCTACAGTTCCCTTTAACAATGATTGCTTTCAAATCTATTTGGACAAGTGCACCTAACGTTTCTTTCTGGATAGGTTGTTTATTGATGGATAGTTTACTAGTTGTAAGTGGAGGGATTACAACAATTATATTCACATTGATGATGCATTGTACATGTTCTGAAACATCTAAAGCTTATCAAGCAACTCATTATTCCATATTAAGTACAGCAGAATTATTGGGAAAACTTTTATTTGGTACAATAGCTGCATACTTTACAGATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTCTATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCGATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAATAAATGAAATTGGATTTTNNNNNANAAAANN] consensusID : consensus_1982#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [TAAAAAAGCATGCTTTAATTGGGTCCATAACCGGCTACTTTACAGATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTCTATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCGATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAATAAATGAAATTGGATTATATCAAATAAACTAAGACAAAATTCTAGTTGAAAGTTTTGTTAAGTTCATGCTACTCACTAGAGGAACAGTTTTTATTTTACAAAGAAGAAAATCCATACGAAATTATAAGTCAATTAACTAGTTGGGTTAATGTGGTGTGGGCGTCTTATATTTACATTAACATTATATGGGGAGGGGGCCACGCCTTAAATGT] [+] EMBL CD135771 [TAAAAAAGCATGCTTTAATTGGGTCCATAACCGGCTACTTTACAGATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTCTATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCGATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAATAAATGAAATTGGATTATATCAAATAAACTAAGACAAAATTCTAGTTGAAAGTTTTGTTAAGTTCATGCTACTCACTAGAGGAACAGTTTTTATTTTACAAAGAAGAAAATCCATACGAAATTATAAGTCAATTAACTAGTTGGGTTAATGTGGTGTGGGCGTCTTATATTTACATTAACATTATATGGGGAGGGGGCCACGCCTTAAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1982#0 TGCTTTTAGATAGAGGATTTTCTTTATCTAAAGTTGGATTTTGGACTGGTGTTGTTGGAC 60 consensus_1982#1 ------------------------------------------------------------ consensus_1982#0 AGTTGGCATCTATAATTGGGTCTACATCTGGATATTATATTCAGAAAAAGCTCAGATCTC 120 consensus_1982#1 ------------------------------------------------------------ consensus_1982#0 CACTGACTTCAGTTTTAAGCCTGATGATAATTCGTGCATGTCTACAGTTCCCTTTAACAA 180 consensus_1982#1 ------------------------------------------------------------ consensus_1982#0 TGATTGCTTTCAAATCTATTTGGACAAGTGCACCTAACGTTTCTTTCTGGATAGGTTGTT 240 consensus_1982#1 ------------------------------------------------------------ consensus_1982#0 TATTGATGGATAGTTTACTAGTTGTAAGTGGAGGGATTACAACAATTATATTCACATTGA 300 consensus_1982#1 ------------------------------------------------------------ consensus_1982#0 TGATGCATTGTACATGTTCTGAAACATCTAAAGCTTATCAAGCAACTCATTATTCCATAT 360 consensus_1982#1 ------------------------------------------------------------ consensus_1982#0 TAAGTACAGCAGAATTATTGGGAAAACTTTTATTTGGTACAATAGCTGCATACTTTACAG 420 consensus_1982#1 --------------TAAAAAAGCATGCTTTAATTGGGTCCA-TAACCGGCTACTTTACAG 45 * * * * **** *** *** ** ** * * ********** consensus_1982#0 ATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTC 480 consensus_1982#1 ATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTC 105 ************************************************************ consensus_1982#0 TATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCG 540 consensus_1982#1 TATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCG 165 ************************************************************ consensus_1982#0 ATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAA 600 consensus_1982#1 ATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAA 225 ************************************************************ consensus_1982#0 TAAATGAAATTGGATTTTNNNNNANAAAANN----------------------------- 631 consensus_1982#1 TAAATGAAATTGGATTATATCAAATAAACTAAGACAAAATTCTAGTTGAAAGTTTTGTTA 285 **************** * * *** consensus_1982#0 ------------------------------------------------------------ consensus_1982#1 AGTTCATGCTACTCACTAGAGGAACAGTTTTTATTTTACAAAGAAGAAAATCCATACGAA 345 consensus_1982#0 ------------------------------------------------------------ consensus_1982#1 ATTATAAGTCAATTAACTAGTTGGGTTAATGTGGTGTGGGCGTCTTATATTTACATTAAC 405 consensus_1982#0 -------------------------------- consensus_1982#1 ATTATATGGGGAGGGGGCCACGCCTTAAATGT 437 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||