These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [GACCGAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCTTATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCTCATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAGGTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGGCTCTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGTACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAATTCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGAGTTGAAGTCATGCATGCTAATGGGATTATGCACAGGGACCTCAAGCCTGCCAATCTGTTGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTTTGGTCTTGCAAGAGTTNTCGAGAATAATAATGAGCGACTATACAGTCATCAAGTGGCTACAAAGGTGGTATCGAGCACCTGAATTA] [+] EMBL CD083079 [GACCGAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCTTATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCTCATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAGGTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGGCTCTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGTACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAATTCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGAGTTGAAGTCATGCATGCTAATGGGATTATGCACAGGGACCTCAAGCCTGCCAATCTGTTGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTTTGGTCTTGCAAGAGTTNTCGAGAATAATAATGAGCGACTATACAGTCATCAAGTGGCTACAAAGGTGGTATCGAGCACCTGAATTA] consensusID : consensus_2144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [GAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCTTATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCTCATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAGGTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGAGAAATAAAGGCTCTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGTACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAATTCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGAGTTGAAGTCATGCATGCTAATGGGATTATGCACAGGGTGACCTCAAGCCTGCCAATCTGTTGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTNTGGTCTTGCAAGAGTTTTCGAGAATAATAATGAGCGACTATACAGTCATCAAGTGG] [+] EMBL CD083120 [GAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCTTATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCTCATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAGGTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGAGAAATAAAGGCTCTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGTACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAATTCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGAGTTGAAGTCATGCATGCTAATGGGATTATGCACAGGGTGACCTCAAGCCTGCCAATCTGTTGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTNTGGTCTTGCAAGAGTTTTCGAGAATAATAATGAGCGACTATACAGTCATCAAGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2144#0 GACCGAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCT 60 consensus_2144#1 ----GAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCT 56 ******************************************************** consensus_2144#0 TATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCT 120 consensus_2144#1 TATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCT 116 ************************************************************ consensus_2144#0 CATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAG 180 consensus_2144#1 CATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAG 176 ************************************************************ consensus_2144#0 GTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCG----------GCT 230 consensus_2144#1 GTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGAGAAATAAAGGCT 236 *********************************************** *** consensus_2144#0 CTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGT 290 consensus_2144#1 CTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGT 296 ************************************************************ consensus_2144#0 ACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAAT 350 consensus_2144#1 ACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAAT 356 ************************************************************ consensus_2144#0 TCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGA 410 consensus_2144#1 TCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGA 416 ************************************************************ consensus_2144#0 GTTGAAGTCATGCATGCTAATGGGATTATGCACAGGG--ACCTCAAGCCTGCCAATCTGT 468 consensus_2144#1 GTTGAAGTCATGCATGCTAATGGGATTATGCACAGGGTGACCTCAAGCCTGCCAATCTGT 476 ************************************* ********************* consensus_2144#0 TGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTTTGGTCTTGCAAGAGTTNTCGAGA 528 consensus_2144#1 TGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTNTGGTCTTGCAAGAGTTTTCGAGA 536 ************************************ **************** ****** consensus_2144#0 ATAATAATGAGCGACTATACAGTCATCAAGTGGCTACAAAGGTGGTATCGAGCACCTGAA 588 consensus_2144#1 ATAATAATGAGCGACTATACAGTCATCAAGTGG--------------------------- 569 ********************************* consensus_2144#0 TTA 591 consensus_2144#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||