These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [CACGAGGGTCATAATTACAACGTTAGGTTTAACATTTGGATATACACATGCTTATCCACATCTTTCTGCTGAACCACCTACAATGAGACTTTTGAGCATGGTAACAATGTCTTCATTATTTGGTCAGGTGATTATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCAATCTTGGTATATGCCGTTATATTCGTACTCTAATATATCCGAATTTCGAAACTATGAAAGTACATCTGTATTTATAGTCTCCGCTTATCAATATATAATTTTGGCCATTGCCTTTTCAGAAGGAGCACCATATCGTAAATCAATCCTAACTAATTTTAGTTCGGATTCCTTCTGTTTGGTTCATACTCATTTTACACTCTATGGTTTTGGCGAATTTTATGGCTAGTTATATTGTCGAATCACTTGTTGATGGAGTCTCTTTTCGA] [+] EMBL CD083391 [CACGAGGGTCATAATTACAACGTTAGGTTTAACATTTGGATATACACATGCTTATCCACATCTTTCTGCTGAACCACCTACAATGAGACTTTTGAGCATGGTAACAATGTCTTCATTATTTGGTCAGGTGATTATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCAATCTTGGTATATGCCGTTATATTCGTACTCTAATATATCCGAATTTCGAAACTATGAAAGTACATCTGTATTTATAGTCTCCGCTTATCAATATATAATTTTGGCCATTGCCTTTTCAGAAGGAGCACCATATCGTAAATCAATCCTAACTAATTTTAGTTCGGATTCCTTCTGTTTGGTTCATACTCATTTTACACTCTATGGTTTTGGCGAATTTTATGGCTAGTTATATTGTCGAATCACTTGTTGATGGAGTCTCTTTTCGA] consensusID : consensus_2175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [ATGGTAACAATGATTTCATTATTTGGTCAGGTGATAATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCAATCTTGGTATATGCCGTTATATTCGTATTCCAATACAGCTGAATATCAAAACTACGAAAATGCGGCTGTATTTATGGTTTCCACGTATCAATATATAATTTTGGCCATTGCCTTTTCAAAAGGAGCACCATATCGTAAATCAATCTTAACTAATTATGCATTTGTGCTGAATATTTTGGTGTGTTTTGTATTCAGTCTTTACATTGACAACTTATCCAGTTAATTGGATATCTTGAACGTTTACAACTTAGTTCGATCCTTCTGTT] [-] EMBL CD126215 [ATGGTAACAATGATTTCATTATTTGGTCAGGTGATAATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCAATCTTGGTATATGCCGTTATATTCGTATTCCAATACAGCTGAATATCAAAACTACGAAAATGCGGCTGTATTTATGGTTTCCACGTATCAATATATAATTTTGGCCATTGCCTTTTCAAAAGGAGCACCATATCGTAAATCAATCTTAACTAATTATGCATTTGTGCTGAATATTTTGGTGTGTTTTGTATTCAGTCTTTACATTGACAACTTATCCAGTTAATTGGATATCTTGAACGTTTACAACTTAGTTCGATCCTTCTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2175#0 CACGAGGGTCATAATTACAACGTTAGGTTTAACATTTGGATATACACATGCTTATCCACA 60 consensus_2175#1 ------------------------------------------------------------ consensus_2175#0 TCTTTCTGCTGAACCACCTACAATGAGACTTTTGAGCATGGTAACAATGTCTTCATTATT 120 consensus_2175#1 -------------------------------------ATGGTAACAATGATTTCATTATT 23 ************ ********* consensus_2175#0 TGGTCAGGTGATTATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCA 180 consensus_2175#1 TGGTCAGGTGATAATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCA 83 ************ *********************************************** consensus_2175#0 ATCTTGGTATATGCCGTTATATTCGTACTCTAATATATCCGAATTTCGAAACTATGAAAG 240 consensus_2175#1 ATCTTGGTATATGCCGTTATATTCGTATTCCAATACAGCTGAATATCAAAACTACGAAAA 143 *************************** ** **** * * **** ** ****** **** consensus_2175#0 TACATCTGTATTTATAGTCTCCGCTTATCAATATATAATTTTGGCCATTGCCTTTTCAGA 300 consensus_2175#1 TGCGGCTGTATTTATGGTTTCCACGTATCAATATATAATTTTGGCCATTGCCTTTTCAAA 203 * * ********** ** *** * ********************************* * consensus_2175#0 AGGAGCACCATATCGTAAATCAATCCTAACTAATT-----TTAGTTCGGATTCCTTCTGT 355 consensus_2175#1 AGGAGCACCATATCGTAAATCAATCTTAACTAATTATGCATTTGTGCTGAATATTTTGGT 263 ************************* ********* ** ** * ** * ** ** consensus_2175#0 TTGGTTCATACTCATTTTACACTCTATGGTTTTGGCGAATTTTATGGCTAGTTATATTGT 415 consensus_2175#1 GTGTTTTGTATTCAGTCTTTACATTGACAACTTATCCAGTTAATTGGATATCTTGAACGT 323 ** ** ** *** * * ** * ** * * ** *** ** * * ** consensus_2175#0 CGAATCACTTGTTGATGGAGTCTCTTTTCGA 446 consensus_2175#1 TTA-CAACTTAGT--TCGATCCTTCTGTT-- 349 * **** * * ** ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||