These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence [ACCCGGACGTACTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCATTGTCATCATCACTATCAACATACACTATTTCTCCTATTTGTAACTAGTTATCACAAGGCTGTATTTCATGCACACTTGTCCATATATATAATATATATATATATACATATATAAATCACTTTCCTGTTCCCGATTTTTTTTTCATTTACTTGTAGAATTGCCATCTTATCATTATCGTAGTCACTGAAACATTCTTATGCGGGATAA] [+] EMBL CD084426 [ACCCGGACGTACTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCATTGTCATCATCACTATCAACATACACTATTTCTCCTATTTGTAACTAGTTATCACAAGGCTGTATTTCATGCACACTTGTCCATATATATAATATATATATATATACATATATAAATCACTTTCCTGTTCCCGATTTTTTTTTCATTTACTTGTAGAATTGCCATCTTATCATTATCGTAGTCACTGAAACATTCTTATGCGGGATAA] consensusID : consensus_2184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [GCGAGGCCACGAATCGGCACGAGGGTTTGAACCGTAATGTACTTCTAGCGATATTTGAATCTTGTCCAACTCTACAATTGTGTGCCAATAATCATATTAGTAAAACTAGTCTGTGGAGAGTATCTCGTTACCATGGCGATAATGGTCATATGAATAACACATTGAACGTAGATTCTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCCT] [+] EMBL CD083412 [GCGAGGCCACGAATCGGCACGAGGGTTTGAACCGTAATGTACTTCTAGCGATATTTGAATCTTGTCCAACTCTACAATTGTGTGCCAATAATCATATTAGTAAAACTAGTCTGTGGAGAGTATCTCGTTACCATGGCGATAATGGTCATATGAATAACACATTGAACGTAGATTCTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2184#0 ------------------------------------------------------------ consensus_2184#1 GCGAGGCCACGAATCGGCACGAGGGTTTGAACCGTAATGTACTTCTAGCGATATTTGAAT 60 consensus_2184#0 ------------------------------------------------------------ consensus_2184#1 CTTGTCCAACTCTACAATTGTGTGCCAATAATCATATTAGTAAAACTAGTCTGTGGAGAG 120 consensus_2184#0 -------------------------------------------ACCCGGACGTACTTATA 17 consensus_2184#1 TATCTCGTTACCATGGCGATAATGGTCATATGAATAACACATTGAACGTAGATTCTTATA 180 ** * * ****** consensus_2184#0 ATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTG 77 consensus_2184#1 ATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTG 240 ************************************************************ consensus_2184#0 TTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAG 137 consensus_2184#1 TTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAG 300 ************************************************************ consensus_2184#0 TTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAA 197 consensus_2184#1 TTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAA 360 ************************************************************ consensus_2184#0 ATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTC 257 consensus_2184#1 ATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTC 420 ************************************************************ consensus_2184#0 ATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGA 317 consensus_2184#1 ATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGA 480 ************************************************************ consensus_2184#0 TCATTGTCATCATCACTATCAACATACACTATTTCTCCTATTTGTAACTAGTTATCACAA 377 consensus_2184#1 TCCT-------------------------------------------------------- 484 ** * consensus_2184#0 GGCTGTATTTCATGCACACTTGTCCATATATATAATATATATATATATACATATATAAAT 437 consensus_2184#1 ------------------------------------------------------------ consensus_2184#0 CACTTTCCTGTTCCCGATTTTTTTTTCATTTACTTGTAGAATTGCCATCTTATCATTATC 497 consensus_2184#1 ------------------------------------------------------------ consensus_2184#0 GTAGTCACTGAAACATTCTTATGCGGGATAA 528 consensus_2184#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||