These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CGTTGTTGCTGAGGTGAAATTCTTTGTAAAGGCGATTGATTCCAATCAGGTATTGTTTGAGAGACATTTGTATGGCAATGAGTAGTAATTTGTCGTACTCCAACACTGCTGGGATTTTGTCCACGAAGTGAACCTTTTGACGAGATCTGATTAAAAGCCTGAGATACTACTTCTGTCAGTGGACCAATTAAAGGTTGCCATTGATCAACTTCATTAGGCAGATCTAAACATAATGGGGGTACCAATCGCCAATAACCATCTGAGCGTACAAGAATACTTTCAGCTGACTGAGGTACTAATTGCGAAGCACACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTATGTCCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAGAAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACGCATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGAAGGTCCAGACATTGTAT] [+] EMBL CD117534 [CGTTGTTGCTGAGGTGAAATTCTTTGTAAAGGCGATTGATTCCAATCAGGTATTGTTTGAGAGACATTTGTATGGCAATGAGTAGTAATTTGTCGTACTCCAACACTGCTGGGATTTTGTCCACGAAGTGAACCTTTTGACGAGATCTGATTAAAAGCCTGAGATACTACTTCTGTCAGTGGACCAATTAAAGGTTGCCATTGATCAACTTCATTAGGCAGATCTAAACATAATGGGGGTACCAATCGCCAATAACCATCTGAGCGTACAAGAATACTTTCAGCTGACTGAGGTACTAATTGCGAAGCACACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTATGTCCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAGAAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACGCATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGAAGGTCCAGACATTGTAT] consensusID : consensus_2192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [TACTTTCAGCTGACTGAGGTACTAATTGCGAAGCATACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTATGTGTTTTTCTTCCCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAGAAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACGCATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGAAGGTCCAGACATTGTATTCCGAGTTACGCTACCGTCTTCATTCAAGTTTCGTGTACCGATGCGACCTTCAAGAATGTCGCAAAGAG] [-] EMBL CD131181 [TACTTTCAGCTGACTGAGGTACTAATTGCGAAGCATACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTATGTGTTTTTCTTCCCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAGAAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACGCATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGAAGGTCCAGACATTGTATTCCGAGTTACGCTACCGTCTTCATTCAAGTTTCGTGTACCGATGCGACCTTCAAGAATGTCGCAAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2192#0 CGTTGTTGCTGAGGTGAAATTCTTTGTAAAGGCGATTGATTCCAATCAGGTATTGTTTGA 60 consensus_2192#1 ------------------------------------------------------------ consensus_2192#0 GAGACATTTGTATGGCAATGAGTAGTAATTTGTCGTACTCCAACACTGCTGGGATTTTGT 120 consensus_2192#1 ------------------------------------------------------------ consensus_2192#0 CCACGAAGTGAACCTTTTGACGAGATCTGATTAAAAGCCTGAGATACTACTTCTGTCAGT 180 consensus_2192#1 ------------------------------------------------------------ consensus_2192#0 GGACCAATTAAAGGTTGCCATTGATCAACTTCATTAGGCAGATCTAAACATAATGGGGGT 240 consensus_2192#1 ------------------------------------------------------------ consensus_2192#0 ACCAATCGCCAATAACCATCTGAGCGTACAAGAATACTTTCAGCTGACTGAGGTACTAAT 300 consensus_2192#1 ----------------------------------TACTTTCAGCTGACTGAGGTACTAAT 26 ************************** consensus_2192#0 TGCGAAGCACACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTA 360 consensus_2192#1 TGCGAAGCATACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTA 86 ********* ************************************************** consensus_2192#0 TGT----------CCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAG 410 consensus_2192#1 TGTGTTTTTCTTCCCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAG 146 *** *********************************************** consensus_2192#0 AAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACG 470 consensus_2192#1 AAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACG 206 ************************************************************ consensus_2192#0 CATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGA 530 consensus_2192#1 CATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGA 266 ************************************************************ consensus_2192#0 AGGTCCAGACATTGTAT------------------------------------------- 547 consensus_2192#1 AGGTCCAGACATTGTATTCCGAGTTACGCTACCGTCTTCATTCAAGTTTCGTGTACCGAT 326 ***************** consensus_2192#0 -------------------------- consensus_2192#1 GCGACCTTCAAGAATGTCGCAAAGAG 352 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||