These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [GGTACCAGGTGAGCACTCGAACTTTAAACTACTGAGTCCAGCAACCGATGGTATACATGTTTTGGTTATAAACAATTCGCGATAAGTCATAACTGTGTGCCATGATCATTAGTTAGTATCTGTCTCATATTGGAAATGGTCGGAGTCCACTAGGTCTCGCGCTTAGCGATTAGATGAGGGTGTCTCAATACACATAACTCAAGACAGTCTAGTTCAGCTTCTTTCCTTGGTTGTTCTCAAATGGATACACCTTCAACCTAAGTACCCAACTCTAGATGCGNTGCTTTACAGATGCTAGAAACTGCGGATCTCTGCAGGCATCGTAGAGAGGTATTGGCTATTAATAGCTGTTACCATGCTAGTGCTCTCGACAAAGTATTGACTTGATGATTCGAACCATTATACAATTGAGTATGGCTTGAAATGTAACCCGAGGTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCCGGCTTTCGATGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATAC] [+] EMBL CD166567 [GGTACCAGGTGAGCACTCGAACTTTAAACTACTGAGTCCAGCAACCGATGGTATACATGTTTTGGTTATAAACAATTCGCGATAAGTCATAACTGTGTGCCATGATCATTAGTTAGTATCTGTCTCATATTGGAAATGGTCGGAGTCCACTAGGTCTCGCGCTTAGCGATTAGATGAGGGTGTCTCAATACACATAACTCAAGACAGTCTAGTTCAGCTTCTTTCCTTGGTTGTTCTCAAATGGATACACCTTCAACCTAAGTACCCAACTCTAGATGCGNTGCTTTACAGATGCTAGAAACTGCGGATCTCTGCAGGCATCGTAGAGAGGTATTGGCTATTAATAGCTGTTACCATGCTAGTGCTCTCGACAAAGTATTGACTTGATGATTCGAACCATTATACAATTGAGTATGGCTTGAAATGTAACCCGAGGTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCCGGCTTTCGATGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATAC] consensusID : consensus_2198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [CATTATCATTAGTTAGTAACTGTCTCATATTGGAAATGGTTGGACTCCACTAGTCTCGGCTTTGCATTACTGAGGGGTCTCATACCATAATCAAACAGCTATTCAGTTTTTCTTGGTTTTTAATGGTCACTTAACCAAGACCAATTAGTGGTGTTAAGTGTAAAATCGATTTCAGCTCTAAACTTTGCATTATTCGTTTTATCTGTCTCCAAAATATTACTGATATTGAACATTATCAATTAGTATGCTTGAATGTACTCCAGTTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCCGGCTTTCGGTGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATACCTAGTGGTTTCAAACCGTAGTCACTTAGTATCACAGACAGAGATGTTACCACTGATCTCCAGTTTACACTGGTTATTAATAAATGTCACGTATGTTTATT] [-] EMBL CD166528 [CATTATCATTAGTTAGTAACTGTCTCATATTGGAAATGGTTGGACTCCACTAGTCTCGGCTTTGCATTACTGAGGGGTCTCATACCATAATCAAACAGCTATTCAGTTTTTCTTGGTTTTTAATGGTCACTTAACCAAGACCAATTAGTGGTGTTAAGTGTAAAATCGATTTCAGCTCTAAACTTTGCATTATTCGTTTTATCTGTCTCCAAAATATTACTGATATTGAACATTATCAATTAGTATGCTTGAATGTACTCCAGTTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCCGGCTTTCGGTGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATACCTAGTGGTTTCAAACCGTAGTCACTTAGTATCACAGACAGAGATGTTACCACTGATCTCCAGTTTACACTGGTTATTAATAAATGTCACGTATGTTTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2198#0 GGTACCAGGTGAGCACTCGAACTTTAAACTACTGAGTCCAGCAACCGATGGTATACATGT 60 consensus_2198#1 ------------------------------------------------------------ consensus_2198#0 TTTGGTTATAAACAATTCGCGATAAGTCATAACTGTGTGCCATGATCATTAGTTAGTATC 120 consensus_2198#1 ----------------------------------------CATTATCATTAGTTAGTAAC 20 *** ************** * consensus_2198#0 TGTCTCATATTGGAAATGGTCGGAGTCCACTAGGTCTCGCGCTTAGCGATTAGATGAGGG 180 consensus_2198#1 TGTCTCATATTGGAAATGGTTGGACTCCACTAG-TCTCG-GCTTTGC-ATTAC-TGAGGG 76 ******************** *** ******** ***** **** ** **** ****** consensus_2198#0 TGTCTCAATACACATAACTCAAGACAGTCTAGTTCAGCTTCTTTCCTTGGTTGTTCTCAA 240 consensus_2198#1 -GTCTCA-TAC-CATAATC--AAACAGCT--ATTCAGTTTTT---CTTGGTTTTT----A 122 ****** *** ***** * **** ***** ** * ******* ** * consensus_2198#0 ATGGATACACCTTCAACCTAAGTACCCAACTCTAGATGCGNTGCTTTACAGATGCTAGAA 300 consensus_2198#1 ATGGTCAC----TTAACCAAGA---CCAATTA-----GTGGTGTT----AAGTG-TAAAA 165 **** ** * **** * **** * * * ** * * ** ** ** consensus_2198#0 ACTGCGGATCTCTGCAGGCATCGTAGAGAGGTATTGGCTATTAATAGCTGTTACCATGCT 360 consensus_2198#1 TC----GATTTCAGC------TCTAAAC-----TTTGC-ATTATTCGTT-TTATC----- 203 * *** ** ** ** * ** ** **** * * * *** * consensus_2198#0 AGTGCTCTCGACAAAGTATTGACTTGATGATTCGAACCATTATACAATTGAGTATGGCTT 420 consensus_2198#1 -----TGTCTCCAAAATATTA--CTGATA--TTGAAC-ATTAT-CAATT-AGTATG-CTT 250 * ** **** **** **** * **** ***** ***** ****** *** consensus_2198#0 GAAATGTAACCCGAGGTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCC 480 consensus_2198#1 GAA-TGTA-CTCCAGTTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCC 308 *** **** * * ** ******************************************** consensus_2198#0 GGCTTTCGATGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATA 540 consensus_2198#1 GGCTTTCGGTGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATA 368 ******** *************************************************** consensus_2198#0 C----------------------------------------------------------- 541 consensus_2198#1 CCTAGTGGTTTCAAACCGTAGTCACTTAGTATCACAGACAGAGATGTTACCACTGATCTC 428 * consensus_2198#0 ----------------------------------------- consensus_2198#1 CAGTTTACACTGGTTATTAATAAATGTCACGTATGTTTATT 469 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||