These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [TAGTACTTCAATGAAATTAAATTTAATATGATGAAAAACAATTTTCTGTTCTTTACCAGATACATCATGAATTGGCTCGTTTACATGCTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAGTAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATGAATTAAATCTCCCACAAAATGTTAATTGGGAATCAGTTTTATTTCACTTAGAACAATCAGCTAAACTTGGCTGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGGTTGATGGCCCATTATCGGAATGTCCCATTAAAGTTAGTCTATTCACTGTTCCAGTTTTATCATTGAAAATAAGATTTCAAGAATAAGTAGAGTAGTTTTTTTTTAAAAATATTCCCAAAATATCTCCCTTCAAGATAATATCAATGGTAAATCAAGTAACCAGGATAATAATAGCTTCTTACATGCAAGCTTTAGTTGGCAATCTAGTCATTTAAAACGAGCGCCTAACCTCGAGATCATTGTAGCCGGAATCCAATGGTATAAAAGTCTAGCTTGGCCTCACCACTT] [+] EMBL CD084958 [TAGTACTTCAATGAAATTAAATTTAATATGATGAAAAACAATTTTCTGTTCTTTACCAGATACATCATGAATTGGCTCGTTTACATGCTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAGTAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATGAATTAAATCTCCCACAAAATGTTAATTGGGAATCAGTTTTATTTCACTTAGAACAATCAGCTAAACTTGGCTGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGGTTGATGGCCCATTATCGGAATGTCCCATTAAAGTTAGTCTATTCACTGTTCCAGTTTTATCATTGAAAATAAGATTTCAAGAATAAGTAGAGTAGTTTTTTTTTAAAAATATTCCCAAAATATCTCCCTTCAAGATAATATCAATGGTAAATCAAGTAACCAGGATAATAATAGCTTCTTACATGCAAGCTTTAGTTGGCAATCTAGTCATTTAAAACGAGCGCCTAACCTCGAGATCATTGTAGCCGGAATCCAATGGTATAAAAGTCTAGCTTGGCCTCACCACTT] consensusID : consensus_2300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [TCAAAGCACAAAAAAGTCTTATTAGTGACCCTGGTTGTGATCCAGTATGTTCAGATTTGGATCAGTCAAATTCTCATTTGAATTCCACAGAAAATTCACAACAGCTCAGTAAAGAAGCTGAACTAATTGAATTTTTCCGTTCACATCAAGCTGGTCATCGAAGCAGTTCCATTGCAGCTTTACATGGTGCTGATACTGTGATTTTAGGTTTAATACATCATGAATTGGCTCGTTTACATGCTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAGTAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATGAATTAAATCTCCCACAAAATGTTAATTGGGAATCAGCTTTATTTCCCTTAGAACAATCAGCTAAACTTGGCCGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGGTTGATGGCCCATTATCGGAATGTCCCATTAAACCTGATCC] [+] EMBL CD159131 [TCAAAGCACAAAAAAGTCTTATTAGTGACCCTGGTTGTGATCCAGTATGTTCAGATTTGGATCAGTCAAATTCTCATTTGAATTCCACAGAAAATTCACAACAGCTCAGTAAAGAAGCTGAACTAATTGAATTTTTCCGTTCACATCAAGCTGGTCATCGAAGCAGTTCCATTGCAGCTTTACATGGTGCTGATACTGTGATTTTAGGTTTAATACATCATGAATTGGCTCGTTTACATGCTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAGTAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATGAATTAAATCTCCCACAAAATGTTAATTGGGAATCAGCTTTATTTCCCTTAGAACAATCAGCTAAACTTGGCCGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGGTTGATGGCCCATTATCGGAATGTCCCATTAAACCTGATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2300#0 ------------------------------------------------------------ consensus_2300#1 TCAAAGCACAAAAAAGTCTTATTAGTGACCCTGGTTGTGATCCAGTATGTTCAGATTTGG 60 consensus_2300#0 ------------------------------------------------------------ consensus_2300#1 ATCAGTCAAATTCTCATTTGAATTCCACAGAAAATTCACAACAGCTCAGTAAAGAAGCTG 120 consensus_2300#0 -------------------------------TAGTACTTCAATGAAATTAAATTTAATAT 29 consensus_2300#1 AACTAATTGAATTTTTCCGTTCACATCAAGCTGGTCATCGAAGCAGTTCCATTGCAGCTT 180 * ** * ** * * * * * * consensus_2300#0 GATGAAAAAC-AATTTTCTGTTCTTTA-CCAGATACATCATGAATTGGCTCGTTTACATG 87 consensus_2300#1 TACATGGTGCTGATACTGTGATTTTAGGTTTAATACATCATGAATTGGCTCGTTTACATG 240 * * ** * ** * ** **************************** consensus_2300#0 CTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAG 147 consensus_2300#1 CTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAG 300 ************************************************************ consensus_2300#0 TAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATG 207 consensus_2300#1 TAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATG 360 ************************************************************ consensus_2300#0 AATTAAATCTCCCACAAAATGTTAATTGGGAATCAGTTTTATTTCACTTAGAACAATCAG 267 consensus_2300#1 AATTAAATCTCCCACAAAATGTTAATTGGGAATCAGCTTTATTTCCCTTAGAACAATCAG 420 ************************************ ******** ************** consensus_2300#0 CTAAACTTGGCTGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGG 327 consensus_2300#1 CTAAACTTGGCCGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGG 480 *********** ************************************************ consensus_2300#0 TTGATGGCCCATTATCGGAATGTCCCATTAAAGTTAGTCTATTCACTGTTCCAGTTTTAT 387 consensus_2300#1 TTGATGGCCCATTATCGGAATGTCCCATTAAACCTGATCC-------------------- 520 ******************************** * ** consensus_2300#0 CATTGAAAATAAGATTTCAAGAATAAGTAGAGTAGTTTTTTTTTAAAAATATTCCCAAAA 447 consensus_2300#1 ------------------------------------------------------------ consensus_2300#0 TATCTCCCTTCAAGATAATATCAATGGTAAATCAAGTAACCAGGATAATAATAGCTTCTT 507 consensus_2300#1 ------------------------------------------------------------ consensus_2300#0 ACATGCAAGCTTTAGTTGGCAATCTAGTCATTTAAAACGAGCGCCTAACCTCGAGATCAT 567 consensus_2300#1 ------------------------------------------------------------ consensus_2300#0 TGTAGCCGGAATCCAATGGTATAAAAGTCTAGCTTGGCCTCACCACTT 615 consensus_2300#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||