These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [CATTGAATGTACTTCAGTAGAAGATCGATAACGAAAGAATGGAGACGAAACGCGATTGGTATGAAAATTCATGAACAATTATAATCGGAGACTATGAGCGGATACTTATAGAAGGAACAATCAAGATTGAAACAATTGATTGATAGTTTGCAAATTAACTGTTCACTATATGGTTCTCATATTTTAATGAGATATTCTGTAATGTTGTGCTAAAATACATTCGATTGTCCCCACTCGTGTTCTTGTTTACTTTATTGCTACTACAATAGAAACCAATCATTTTATAAACAGAAAAGTATTATGTGTATTTATCATTATTTTGCTTGAGAAGCTGATCGGACTGGTGTATAGCAAGATTACATAGACTCTGTAGGACTAATCACTAGCTATACAATTTAATTGTAACACCTTTATATACTATTGAACGTTCGTTCAGATATTAGAAGGACTAGGTTCTTTGAGTTAGCATAGGTAA] [+] EMBL CD112386 [CATTGAATGTACTTCAGTAGAAGATCGATAACGAAAGAATGGAGACGAAACGCGATTGGTATGAAAATTCATGAACAATTATAATCGGAGACTATGAGCGGATACTTATAGAAGGAACAATCAAGATTGAAACAATTGATTGATAGTTTGCAAATTAACTGTTCACTATATGGTTCTCATATTTTAATGAGATATTCTGTAATGTTGTGCTAAAATACATTCGATTGTCCCCACTCGTGTTCTTGTTTACTTTATTGCTACTACAATAGAAACCAATCATTTTATAAACAGAAAAGTATTATGTGTATTTATCATTATTTTGCTTGAGAAGCTGATCGGACTGGTGTATAGCAAGATTACATAGACTCTGTAGGACTAATCACTAGCTATACAATTTAATTGTAACACCTTTATATACTATTGAACGTTCGTTCAGATATTAGAAGGACTAGGTTCTTTGAGTTAGCATAGGTAA] consensusID : consensus_233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [TTTCAGATCATCCATTTTATTGTGACAAAATCCACTTTGACTGAATATACAAGCTAGGATATGATTTAATCACAGTCGCGAATAGTTAAAACGGTCCTTTCCTATTTCACCCATGTATGGAACGTCACACAGAAAGATGCTTCTGACTAGCATATCAATCATCTGATTTCAATTTGAACGTTTTCGTCGTGAGCGGTTTTATATACAGATAATCTCATCAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCCCATTCCTCTTCCTTCTAGTGATTGACTGGATTATGAAGAATTTGACATCTGACGGGAAATACGGAATGCAATGGACGTCTCAGAATCAATTAG] [+] EMBL CD122228 [TTTCAGATCATCCATTTTATTGTGACAAAATCCACTTTGACTGAATATACAAGCTAGGATATGATTTAATCACAGTCGCGAATAGTTAAAACGGTCCTTTCCTATTTCACCCATGTATGGAACGTCACACAGAAAGATGCTTCTGACTAGCATATCAATCATCTGATTTCAATTTGAACGTTTTCGTCGTGAGCGGTTTTATATACAGATAATCTCATCAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCCCATTCCTCTTCCTTCTAGTGATTGACTGGATTATGAAGAATTTGACATCTGACGGGAAATACGGAATGCAATGGACGTCTCAGAATCAATTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_233#0 CATTGAATGTACTTCAGTAGAAGATCGATAACGAAAGAATGGAGACGAAACGCGATTGGT 60 consensus_233#1 ------------------------------------------------------------ consensus_233#0 ATGAAAATTCATGAACAATTATAATCGGAGACTATGAGCGGATACTTATAGAAGGAACAA 120 consensus_233#1 -------TTTCAGATCATCCATTTT-----ATTGTGACAAAATCCACTTTGACTGAATAT 48 ** ** ** ** * * * *** ** * * ** *** * consensus_233#0 TCAAGATTGAA-ACAATTGATTGATAGTTTGCAAATTAACTGTTCACTATATGGTTCTCA 179 consensus_233#1 ACAAGCTAGGATATGATTTAATCACAGTC-GCGAATAG-----TTAAAACGGTCCTTTCC 102 **** * * * * *** * * * *** ** *** * * * * ** consensus_233#0 TATTTTAATGAGATATTCTGTAATGTTGTGCTAAAATACATTCGATTGTCCCCACTCGTG 239 consensus_233#1 TATTTCACCCATGTAT---GGAACGTCACACAGAAA-------GATGCTTCTGACTAGCA 152 ***** * * *** * ** ** * *** *** * * *** * consensus_233#0 TTCTTGTTTACTTTATTGCTACTACAATAGAAACCAATCATTTTATAAACAGAAAAGTAT 299 consensus_233#1 TA-TCAATCATCTGATTTCAATTTGAA-------CGTTTTCGTCGTGAGCGG-----TTT 199 * * * * * *** * * * ** * * * * * * * * * consensus_233#0 TATGTGTATTTATCATTATTTTGCTTGAGAAGCTGATCGGACTGGTGTATAGCAAGATTA 359 consensus_233#1 TATATACAGATA-----ATCTCATCAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCCCA 254 *** * * ** ** * ** * * * ** * * * **** * * consensus_233#0 CATAGACTCTGTAGGACTAATCACTAGCTATACAATTTA-ATTGTAACACCTT-TATATA 417 consensus_233#1 TTCCTCTTCCTT----CTAGTGATTGACTGGATTATGAAGAATTTGACATCTGACGGGAA 310 ** * *** * * * ** * ** * * * * *** ** * consensus_233#0 CTATTGAACGTTCGTTCAGATATTAGAAGGACTAGGTTCTTTGAGTTAGCATAGGTAA 475 consensus_233#1 ATACGGAATGCA-ATGGACGTCTCAGAATCAATTAG---------------------- 345 ** *** * * * * * **** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||