cluster # 2450

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Schistosoma mansoni
cluster # 2450 cluster # 2450 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2450#0 length = 440 sequences # 1

consensus_2450#1 length = 109 sequences # 1

consensusID : consensus_2450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [TATTAACAGTACTACCGAAAATGAGATTTCAGTTAGTGATAACGAACTCAAACAGTATTGCACACTGTTCACTGAATACAAAAATAGGGTTAGATATAAATGTAAAGGAATAAAAACAACTATTTAGATACAGATACAGTCAGTCATACACTAAACACACAACTATTGTATATATACCGAAAAGAAATATTGAATCAGATACAATGAAAGATGAAAGCGGTTTGTTCAAAAATAGTACTTTTGTGACATTATTAAATACTCTAAATATATAAGAAGCACGTGTATTTCAAATAGCAAAATAATCAAAATATAAAGCGCGTTCACAATTCATTTTAAACATACGCGCATATGTGTGTAGTCCTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGTGTAAGGTGCACTAAAAACCT]

[+] EMBL CD196914             [TATTAACAGTACTACCGAAAATGAGATTTCAGTTAGTGATAACGAACTCAAACAGTATTGCACACTGTTCACTGAATACAAAAATAGGGTTAGATATAAATGTAAAGGAATAAAAACAACTATTTAGATACAGATACAGTCAGTCATACACTAAACACACAACTATTGTATATATACCGAAAAGAAATATTGAATCAGATACAATGAAAGATGAAAGCGGTTTGTTCAAAAATAGTACTTTTGTGACATTATTAAATACTCTAAATATATAAGAAGCACGTGTATTTCAAATAGCAAAATAATCAAAATATAAAGCGCGTTCACAATTCATTTTAAACATACGCGCATATGTGTGTAGTCCTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGTGTAAGGTGCACTAAAAACCT]




>consensus_2450#0
TATTAACAGTACTACCGAAAATGAGATTTCAGTTAGTGATAACGAACTCAAACAGTATTG
CACACTGTTCACTGAATACAAAAATAGGGTTAGATATAAATGTAAAGGAATAAAAACAAC
TATTTAGATACAGATACAGTCAGTCATACACTAAACACACAACTATTGTATATATACCGA
AAAGAAATATTGAATCAGATACAATGAAAGATGAAAGCGGTTTGTTCAAAAATAGTACTT
TTGTGACATTATTAAATACTCTAAATATATAAGAAGCACGTGTATTTCAAATAGCAAAAT
AATCAAAATATAAAGCGCGTTCACAATTCATTTTAAACATACGCGCATATGTGTGTAGTC
CTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGT
GTAAGGTGCACTAAAAACCT

consensusID : consensus_2450#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 109
fasta sequence

                              [TACCTTCGCTGTTGTGTGTAGTCCTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGTGTAAGGTGCACTAAAAACCTTTGAAC]

[+] EMBL CD087370             [TACCTTCGCTGTTGTGTGTAGTCCTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGTGTAAGGTGCACTAAAAACCTTTGAAC]




>consensus_2450#1
TACCTTCGCTGTTGTGTGTAGTCCTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATA
ATTTAAATATGTTATAACCATGTGTAAGGTGCACTAAAAACCTTTGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2450#0      TATTAACAGTACTACCGAAAATGAGATTTCAGTTAGTGATAACGAACTCAAACAGTATTG 60
consensus_2450#1      ------------------------------------------------------------
                                                                                  

consensus_2450#0      CACACTGTTCACTGAATACAAAAATAGGGTTAGATATAAATGTAAAGGAATAAAAACAAC 120
consensus_2450#1      ------------------------------------------------------------
                                                                                  

consensus_2450#0      TATTTAGATACAGATACAGTCAGTCATACACTAAACACACAACTATTGTATATATACCGA 180
consensus_2450#1      ------------------------------------------------------------
                                                                                  

consensus_2450#0      AAAGAAATATTGAATCAGATACAATGAAAGATGAAAGCGGTTTGTTCAAAAATAGTACTT 240
consensus_2450#1      ------------------------------------------------------------
                                                                                  

consensus_2450#0      TTGTGACATTATTAAATACTCTAAATATATAAGAAGCACGTGTATTTCAAATAGCAAAAT 300
consensus_2450#1      ------------------------------------------------------------
                                                                                  

consensus_2450#0      AATCAAAATATAAAGCGCGTTCACAATTCATTTTAAACATACGCGCATATGTGTGTAGTC 360
consensus_2450#1      -------------------------------------TACCTTCGCTGTTGTGTGTAGTC 23
                                                            *    ***   ***********

consensus_2450#0      CTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGT 420
consensus_2450#1      CTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGT 83
                      ************************************************************

consensus_2450#0      GTAAGGTGCACTAAAAACCT------ 440
consensus_2450#1      GTAAGGTGCACTAAAAACCTTTGAAC 109
                      ********************