These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2451#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [GCTCACGGAACTTGCTTCAACGAACTTGGACAATTTAAACACATTCAAATGTCCTCTGGATCTACTTGATCAAGAAGTGAAGTTGTATGAGTGATTTGATCACTTTCTTGAATTACATCAAGTTCTGGCAAGACAAGTTGGATGATCTTTCCATCCATCACGACGAATCTGGAACATAACTTCTAACATATAAGAAATACGTTTATCACATTGGCCTTCATTTAAGATACGTCGAAGATGTTCAAAGATTCCATGTACACCTTTTGGTACAAGACGTGAAAGCATTGCACCACATTCTTTAAGAACAGATACTGCCACTTCTACACTGTCATCGGTTGTTTGCTCTAGTAGTAACGTCAATAGTTCCAGGATTATTAATTCATGAACGACTTTTGGGTTGACCAAATGAGCTAGAAATCGTGCGGTGGACAAACATCGATCTTTCTGATTACGTCGAAATGCTTTACGGAATTCATTGATTAATCGTTTAAGAACCAGTTCTCCAACCTTGGGAAATTTCGAATTTACAACAGCA] [+] EMBL CD065594 [GCTCACGGAACTTGCTTCAACGAACTTGGACAATTTAAACACATTCAAATGTCCTCTGGATCTACTTGATCAAGAAGTGAAGTTGTATGAGTGATTTGATCACTTTCTTGAATTACATCAAGTTCTGGCAAGACAAGTTGGATGATCTTTCCATCCATCACGACGAATCTGGAACATAACTTCTAACATATAAGAAATACGTTTATCACATTGGCCTTCATTTAAGATACGTCGAAGATGTTCAAAGATTCCATGTACACCTTTTGGTACAAGACGTGAAAGCATTGCACCACATTCTTTAAGAACAGATACTGCCACTTCTACACTGTCATCGGTTGTTTGCTCTAGTAGTAACGTCAATAGTTCCAGGATTATTAATTCATGAACGACTTTTGGGTTGACCAAATGAGCTAGAAATCGTGCGGTGGACAAACATCGATCTTTCTGATTACGTCGAAATGCTTTACGGAATTCATTGATTAATCGTTTAAGAACCAGTTCTCCAACCTTGGGAAATTTCGAATTTACAACAGCA] consensusID : consensus_2451#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [CAACTTCACTTCTTGATCAAGTAGATCCAGAGGAACATTTGAATGTGTTTAAATTCGATCCAGAGTTCTTGGCAAATGAAGCAAAATATGCTGAAATTAGAGAAGCATTATTTGAATCGAATGAAGATTCAGAAGCTGAGTCAGATGGTGAAAATGAAGGTGAAGATTCAGACGAATCAGGTAATGAAGATGATAACGATGATGAAGAGGATGAAGAACATAAACGTAGTGCCGCTGCAACTGCAGAGAATCAACAAAC] [+] EMBL CD148469 [CAACTTCACTTCTTGATCAAGTAGATCCAGAGGAACATTTGAATGTGTTTAAATTCGATCCAGAGTTCTTGGCAAATGAAGCAAAATATGCTGAAATTAGAGAAGCATTATTTGAATCGAATGAAGATTCAGAAGCTGAGTCAGATGGTGAAAATGAAGGTGAAGATTCAGACGAATCAGGTAATGAAGATGATAACGATGATGAAGAGGATGAAGAACATAAACGTAGTGCCGCTGCAACTGCAGAGAATCAACAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2451#0 -GCTCACGGAACTTGCTTCAACGAACTTGGACAA---TTTAAACACATTCAAATGTCCTC 56 consensus_2451#1 CAACTTCACTTCTTGATCAAGTAGATCCAGAGGAACATTTGAATGTGTTTAAATTCGATC 60 * **** * * * ** * *** ** ** **** ** consensus_2451#0 TGGATCTACTTGATCAAGAAGTGAAGT-TGTATGAGTGATTTGATCACTTTCTTGAATTA 115 consensus_2451#1 CAGAGTTCTTGGCAAATGAAGCAAAATATGCTGAAATTAGAGAAGCA-TTATTTGAATCG 119 ** * * * * **** ** * ** * * * * ** ** ****** consensus_2451#0 CATCAAGTTCTGGCAAGACAAGTTGGATGATCTTTCCATCCATCACGACGAATCTGGAAC 175 consensus_2451#1 AATGAAGATTCAG-AAGCTGAGTCAGATGGTGAA---AATGAAGGTGAAGATTCAGACGA 175 ** *** * * *** *** **** * * * ** ** ** * consensus_2451#0 ATAACTTCTAACATATAAGAAATACGTTTATCACATTGGCCTTCATTTAAGATACGTCGA 235 consensus_2451#1 ATCAGGTAATGAAGATGATAACGATGATGAAGAGGATGAAGAACATAAACGTAGTGCCGC 235 ** * * * ** * ** * * * * * ** *** * * * ** consensus_2451#0 AGATGTT-CAAAGATTCCATGTACACCTTTTGGTACAAGACGTGAAAGCATTGCACCACA 294 consensus_2451#1 TGCAACTGCAGAGAATCAACAAAC------------------------------------ 259 * * ** *** ** * ** consensus_2451#0 TTCTTTAAGAACAGATACTGCCACTTCTACACTGTCATCGGTTGTTTGCTCTAGTAGTAA 354 consensus_2451#1 ------------------------------------------------------------ consensus_2451#0 CGTCAATAGTTCCAGGATTATTAATTCATGAACGACTTTTGGGTTGACCAAATGAGCTAG 414 consensus_2451#1 ------------------------------------------------------------ consensus_2451#0 AAATCGTGCGGTGGACAAACATCGATCTTTCTGATTACGTCGAAATGCTTTACGGAATTC 474 consensus_2451#1 ------------------------------------------------------------ consensus_2451#0 ATTGATTAATCGTTTAAGAACCAGTTCTCCAACCTTGGGAAATTTCGAATTTACAACAGC 534 consensus_2451#1 ------------------------------------------------------------ consensus_2451#0 A 535 consensus_2451#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||