These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [TGGAGGTAACAGATCAGAGAGAAAACGTCCATCTGATGAAAATATCTAAATTAGAATGAGGATAAAAGTATTATTTAATACATCCAAAAATAATTTACAATATTTTCTCAAGTTCAGCTAAAAAATGAGGAGCATAATGATATCACATTACACAAATAAATTACATACTATACAACCAACTACATGGAAAAACAACACTTGGAAAACCGAGTCCAGAAATCGTATAAACAAAAATAAATAAGAGTAGTGAAAGTGAACAACCCTGATGAACTGTTAAGGTAATCATCGGATTGCCCAGATTTTGTTTATAATATTAAAGCCTTACTAGTAACGGTAACCTCAAGTGCTTTTCTTCTAATTTAGTTTGTCGCATGACCTCTGAACTTTTCTGATCGGTTGCCATTAATTTTATTTCGCTGACTTTCTGAATGCTTGAAGGTCATGCTTATTTTTACATAATGAGTTGTATCACTTTGAGTCCTTCTGCTAGAATAGTAATTTTTTTCATACATCTCGTCTTTTTCTTATGTTACCAGCTAATTGTTGAATTGTGTGTCGGCTGCCATTATCCATTCCCCAAGATAACCGTTCGTATTAGGATAGCTTATTTGTTCCTTAATTTTCAAGTATCTTA] [+] EMBL CD066105 [TGGAGGTAACAGATCAGAGAGAAAACGTCCATCTGATGAAAATATCTAAATTAGAATGAGGATAAAAGTATTATTTAATACATCCAAAAATAATTTACAATATTTTCTCAAGTTCAGCTAAAAAATGAGGAGCATAATGATATCACATTACACAAATAAATTACATACTATACAACCAACTACATGGAAAAACAACACTTGGAAAACCGAGTCCAGAAATCGTATAAACAAAAATAAATAAGAGTAGTGAAAGTGAACAACCCTGATGAACTGTTAAGGTAATCATCGGATTGCCCAGATTTTGTTTATAATATTAAAGCCTTACTAGTAACGGTAACCTCAAGTGCTTTTCTTCTAATTTAGTTTGTCGCATGACCTCTGAACTTTTCTGATCGGTTGCCATTAATTTTATTTCGCTGACTTTCTGAATGCTTGAAGGTCATGCTTATTTTTACATAATGAGTTGTATCACTTTGAGTCCTTCTGCTAGAATAGTAATTTTTTTCATACATCTCGTCTTTTTCTTATGTTACCAGCTAATTGTTGAATTGTGTGTCGGCTGCCATTATCCATTCCCCAAGATAACCGTTCGTATTAGGATAGCTTATTTGTTCCTTAATTTTCAAGTATCTTA] consensusID : consensus_2529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [GCTGACTCTGGAGAATTGATTTTGTCTACAGGAACGTGTATTCGAATATTTTCATCAGATGGACGTTTTCTCTCTGATCTGTTACCTCCAAATCAACCAGGTGATGATCATTTCCGTGTTCGTATCTCAACATTACCGTCAAGAGCTTCGCTGGATACTTCTTATTTTAATGCTTTGAATAACTCACATGACAATCCAAATTCGGAATATATAAATGCTGGTCGTTTGAGTTTATCTGAAATCCTCCATTCAAGTGGTCCTTCAAAGTCACGAATTCCTCCATCACGTGGTCAATTCGGTGGTGTGTCATTCAGTACTGCACCAACGGAGTCTGCTAAT] [+] EMBL CD066715 [GCTGACTCTGGAGAATTGATTTTGTCTACAGGAACGTGTATTCGAATATTTTCATCAGATGGACGTTTTCTCTCTGATCTGTTACCTCCAAATCAACCAGGTGATGATCATTTCCGTGTTCGTATCTCAACATTACCGTCAAGAGCTTCGCTGGATACTTCTTATTTTAATGCTTTGAATAACTCACATGACAATCCAAATTCGGAATATATAAATGCTGGTCGTTTGAGTTTATCTGAAATCCTCCATTCAAGTGGTCCTTCAAAGTCACGAATTCCTCCATCACGTGGTCAATTCGGTGGTGTGTCATTCAGTACTGCACCAACGGAGTCTGCTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2529#0 TGGAGGTAACAGATCAGAGAGAAAACGTCCATCTGATGAAAATATCTAAATTAGAATGAG 60 consensus_2529#1 ------------------------------------------------------------ consensus_2529#0 GATAAAAGTATTATTTAATACATCCAAAAATAATTTACAATATTTTCTCAAGTTCAGCTA 120 consensus_2529#1 ------------------------------------------------------------ consensus_2529#0 AAAAATGAGGAGCATAATGATATCACATTACACAAATAAATTACATACTATACAACCAAC 180 consensus_2529#1 ------------------------------------------------------------ consensus_2529#0 TACATGGAAAAACAACACTTGGAAAACCGAGTCCAGAAATCGTATAAACAAAAATAAATA 240 consensus_2529#1 -----------GCTGACTCTGGAGAATTGATT-------TTGTCTACAGGAACGTGTATT 42 * **** ** ** * * ** ** * ** * ** consensus_2529#0 AGAGTAGTGAAAGTGAACAACCCTGATGAACTGTTAAGGTAATCATCGGATTGCCCAGAT 300 consensus_2529#1 CGAATATTTTCATCAGATGGACGTTTTCTCTCTGATCTGTTACCTCCAAATCAACCAGG- 101 ** ** * * * * * * ** * * * ** **** consensus_2529#0 TTTGTTTATAATATTAAAGCCTTACTAGTAACGGTAACCTCAAGTGCTTTTCTTCTAATT 360 consensus_2529#1 --TGATGATCATTTCCGTGTTCGTATCTCAACATTACCGTCAAGAGCTTCGCTGGATACT 159 ** * ** ** * * * *** ** * ***** **** ** * * consensus_2529#0 TAGTTTGTCGCATGACCTCTGAACTTTTCTGATCGGTTGCCATTAATTTTATTTCGCTGA 420 consensus_2529#1 TCTTATTTTA-ATG--CTTTGAATAACTCACATGA--------CAATCCAAATTCG--GA 206 * * * * *** ** **** ** ** *** * **** ** consensus_2529#0 CTTTCTGAATGCTTGAAGGTCATGCTTATTTTTACATAATGAGTTGTATCACTTTGAGTC 480 consensus_2529#1 ATATATAAATGCTGGTCGTTTGAGTTTATCT---------GAAATCCTCCA-TTCAAGTG 256 * * * ****** * * * * **** * ** * ** ** *** consensus_2529#0 CTTCTGCTAGAATAGTAATTTTTTTCATACATCTCGTCTTTTTCTTATGTTACCAGCTAA 540 consensus_2529#1 GTCCT-TCAAAGTCACGAATTCCTCCAT-CACGTGGTCAATTCGGTGGTGTGTCA-TTCA 313 * ** * * * * ** * *** ** * *** ** * * ** * * consensus_2529#0 TTGTTGAATTGTGTGTCGGCTGCCATTATCCATTCCCCAAGATAACCGTTCGTATTAGGA 600 consensus_2529#1 GTACTGCACCA-ACGGAGTCTGCTAAT--------------------------------- 339 * ** * * * **** * * consensus_2529#0 TAGCTTATTTGTTCCTTAATTTTCAAGTATCTTA 634 consensus_2529#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||