These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [CAAAAATGGGCACGAGGGCCACTCGGACCAAGTTTTGCTGTCCTTCTAACTTCTTCGGGAATTCGTGTCTTCCATGCCCTCCGTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTGTATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTTTCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGGTTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAAATGGACTCTGGTGATCAACGAGGATGTGTTGATATAAATGAATGTGTTGATAGTCCTTGCAACAGATCTACACATTTTTGCTTAAACAAACCTGGTTCTTACGAGTGTGTTCCCTGTCATTCTGCTTGTAATAAATGTTCTGGTCCGACTGCAAACGATTGTGAATCTTGTGCAAGTGGATACCAAAGAGGAAATGGAGACGTATGTGAAGATATAAACGAATGTAATGCTGACAGTAATATTTGTAATAGCGAAGGAGAACTTTGCACAAACACAGTTGGGAGTTTTAAATGTGATTGCAAGAGTGGATACAAGCGGACTATTATTGG] [+] EMBL CD081254 [CAAAAATGGGCACGAGGGCCACTCGGACCAAGTTTTGCTGTCCTTCTAACTTCTTCGGGAATTCGTGTCTTCCATGCCCTCCGTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTGTATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTTTCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGGTTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAAATGGACTCTGGTGATCAACGAGGATGTGTTGATATAAATGAATGTGTTGATAGTCCTTGCAACAGATCTACACATTTTTGCTTAAACAAACCTGGTTCTTACGAGTGTGTTCCCTGTCATTCTGCTTGTAATAAATGTTCTGGTCCGACTGCAAACGATTGTGAATCTTGTGCAAGTGGATACCAAAGAGGAAATGGAGACGTATGTGAAGATATAAACGAATGTAATGCTGACAGTAATATTTGTAATAGCGAAGGAGAACTTTGCACAAACACAGTTGGGAGTTTTAAATGTGATTGCAAGAGTGGATACAAGCGGACTATTATTGG] consensusID : consensus_2545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [CTCTGTTAGCGAAGTGCGCTACCACGATATTGTCGAAGGAATCTGTAGTGATGTTAAACAAGCAGTCAAATGTCATGAGTTTATGGAAAGTATTGAACATCATCTAGAAGATTGGTGGCTTAGAGATTACAGGAGTTATGCTAATAAAATAGAAGGGTTTGAGGAGGATTTATGTGTCACTCGGACCAAGTTTTGCTGTCCTTCTAACTCCTTCGGGAATTCGTGTCTTCCATGCCCTCCGTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTGTATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTTTCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGGTTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAA] [-] EMBL CD066232 [CTCTGTTAGCGAAGTGCGCTACCACGATATTGTCGAAGGAATCTGTAGTGATGTTAAACAAGCAGTCAAATGTCATGAGTTTATGGAAAGTATTGAACATCATCTAGAAGATTGGTGGCTTAGAGATTACAGGAGTTATGCTAATAAAATAGAAGGGTTTGAGGAGGATTTATGTGTCACTCGGACCAAGTTTTGCTGTCCTTCTAACTCCTTCGGGAATTCGTGTCTTCCATGCCCTCCGTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTGTATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTTTCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGGTTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2545#0 ------------------------------------------------------------ consensus_2545#1 CTCTGTTAGCGAAGTGCGCTACCACGATATTGTCGAAGGAATCTGTAGTGATGTTAAACA 60 consensus_2545#0 ------------------------------------------------------------ consensus_2545#1 AGCAGTCAAATGTCATGAGTTTATGGAAAGTATTGAACATCATCTAGAAGATTGGTGGCT 120 consensus_2545#0 --------------------------------------CAAAAATGGGCACGAGGGCCAC 22 consensus_2545#1 TAGAGATTACAGGAGTTATGCTAATAAAATAGAAGGGTTTGAGGAGGATTTATGTGTCAC 180 * ** * * *** consensus_2545#0 TCGGACCAAGTTTTGCTGTCCTTCTAACTTCTTCGGGAATTCGTGTCTTCCATGCCCTCC 82 consensus_2545#1 TCGGACCAAGTTTTGCTGTCCTTCTAACTCCTTCGGGAATTCGTGTCTTCCATGCCCTCC 240 ***************************** ****************************** consensus_2545#0 GTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTG 142 consensus_2545#1 GTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTG 300 ************************************************************ consensus_2545#0 TATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTT 202 consensus_2545#1 TATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTT 360 ************************************************************ consensus_2545#0 TCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGG 262 consensus_2545#1 TCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGG 420 ************************************************************ consensus_2545#0 TTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAAATGGA 322 consensus_2545#1 TTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAA----- 475 ******************************************************* consensus_2545#0 CTCTGGTGATCAACGAGGATGTGTTGATATAAATGAATGTGTTGATAGTCCTTGCAACAG 382 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 ATCTACACATTTTTGCTTAAACAAACCTGGTTCTTACGAGTGTGTTCCCTGTCATTCTGC 442 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 TTGTAATAAATGTTCTGGTCCGACTGCAAACGATTGTGAATCTTGTGCAAGTGGATACCA 502 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 AAGAGGAAATGGAGACGTATGTGAAGATATAAACGAATGTAATGCTGACAGTAATATTTG 562 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 TAATAGCGAAGGAGAACTTTGCACAAACACAGTTGGGAGTTTTAAATGTGATTGCAAGAG 622 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 TGGATACAAGCGGACTATTATTGG 646 consensus_2545#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||