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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2580 cluster # 2580       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2580#0 length = 540 sequences # 1  
consensus_2580#1 length = 398 sequences # 1  

consensusID : consensus_2580#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence
                              [GCTTCAATAAACCATAGTAAACGCCCTTCTACACTTTTATACAACACAACGAAGGCTGTGTTAAGATTAATCTTATGACATGTTTCAATTATGTGTTTTGCAATAGAGGATGATGGATGTTTATTCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGAAGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTTTTTTTTCAAGGGATACAAGTAATAGTTGATGACTACTTTGGTTATACTATTATTACCATTATTGTAGGAACAATGGTTGAAGTTAGATAATAACACCGTTGAATGTTGGCTCACTGGTCTCGAGGCTAACCGTTCACGCGCGAGATCAAAGGTCCTGAGTCAAAATCCCGCGTGTGGGATCGTGGATCCACACTGCTGAGAAGTCTCATACT]

[+] EMBL CD090071             [GCTTCAATAAACCATAGTAAACGCCCTTCTACACTTTTATACAACACAACGAAGGCTGTGTTAAGATTAATCTTATGACATGTTTCAATTATGTGTTTTGCAATAGAGGATGATGGATGTTTATTCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGAAGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTTTTTTTTCAAGGGATACAAGTAATAGTTGATGACTACTTTGGTTATACTATTATTACCATTATTGTAGGAACAATGGTTGAAGTTAGATAATAACACCGTTGAATGTTGGCTCACTGGTCTCGAGGCTAACCGTTCACGCGCGAGATCAAAGGTCCTGAGTCAAAATCCCGCGTGTGGGATCGTGGATCCACACTGCTGAGAAGTCTCATACT]


>consensus_2580#0 GCTTCAATAAACCATAGTAAACGCCCTTCTACACTTTTATACAACACAACGAAGGCTGTG TTAAGATTAATCTTATGACATGTTTCAATTATGTGTTTTGCAATAGAGGATGATGGATGT TTATTCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAG TAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGAT CTTTTCATGATAATGAACTTTGAAGCGTAATATGGGAAGGTATCACAGAAAACTATATTT TCCATATAGTAAATTGCGGTTTTTTTTTTTTTTTCAAGGGATACAAGTAATAGTTGATGA CTACTTTGGTTATACTATTATTACCATTATTGTAGGAACAATGGTTGAAGTTAGATAATA ACACCGTTGAATGTTGGCTCACTGGTCTCGAGGCTAACCGTTCACGCGCGAGATCAAAGG TCCTGAGTCAAAATCCCGCGTGTGGGATCGTGGATCCACACTGCTGAGAAGTCTCATACT



consensusID : consensus_2580#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence
                              [TCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGATGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTAGTATACACTTATTGGTATTTTACTAAGTATTTTATTTTACTCTGCTTTTTTTCTCAAAGAATCTATTTGCTTTCTACGGACCATATGGGATTTTCAAATTTATCAAATAAAATATAATTCGATTAAGAATGAAACATTCACATATATAACACATGAAAAGTCCTTTTTTGTTTGCTTTAGTGCCCTGTTTAATA]

[-] EMBL CD197802             [TCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGATGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTAGTATACACTTATTGGTATTTTACTAAGTATTTTATTTTACTCTGCTTTTTTTCTCAAAGAATCTATTTGCTTTCTACGGACCATATGGGATTTTCAAATTTATCAAATAAAATATAATTCGATTAAGAATGAAACATTCACATATATAACACATGAAAAGTCCTTTTTTGTTTGCTTTAGTGCCCTGTTTAATA]


>consensus_2580#1 TCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAG ATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTT TCATGATAATGAACTTTGATGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCA TATAGTAAATTGCGGTTTTTTTTAGTATACACTTATTGGTATTTTACTAAGTATTTTATT TTACTCTGCTTTTTTTCTCAAAGAATCTATTTGCTTTCTACGGACCATATGGGATTTTCA AATTTATCAAATAAAATATAATTCGATTAAGAATGAAACATTCACATATATAACACATGA AAAGTCCTTTTTTGTTTGCTTTAGTGCCCTGTTTAATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2580#0      GCTTCAATAAACCATAGTAAACGCCCTTCTACACTTTTATACAACACAACGAAGGCTGTG 60
consensus_2580#1      ------------------------------------------------------------
                                                                                  

consensus_2580#0      TTAAGATTAATCTTATGACATGTTTCAATTATGTGTTTTGCAATAGAGGATGATGGATGT 120
consensus_2580#1      ------------------------------------------------------------
                                                                                  

consensus_2580#0      TTATTCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAG 180
consensus_2580#1      ----TCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAG 56
                          ********************************************************

consensus_2580#0      TAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGAT 240
consensus_2580#1      TAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGAT 116
                      ************************************************************

consensus_2580#0      CTTTTCATGATAATGAACTTTGAAGCGTAATATGGGAAGGTATCACAGAAAACTATATTT 300
consensus_2580#1      CTTTTCATGATAATGAACTTTGATGCGTAATATGGGAAGGTATCACAGAAAACTATATTT 176
                      *********************** ************************************

consensus_2580#0      TCCATATAGTAAATTGCGGTTTTTTTTTTTTTTTCAAGGGATACAAGTAATAGTTGATGA 360
consensus_2580#1      TCCATATAGTAAATTGCGGTTTTTTTT----------AGTATACACTTATTGGTATTTTA 226
                      ***************************           * *****  ** * **   * *

consensus_2580#0      CTACTTTGGTTATACTATTATTACCATTATTGTAGGAACAATGGTTGAAGTTAGATAATA 420
consensus_2580#1      CTAAGTATTTTATTTTACT-CTGCTTTTTTTCTCAAAGAATCTATTTGCTTTCTACGG-- 283
                      ***  *   ****  ** *  * *  ** ** *   *  *    **    **  *     

consensus_2580#0      ACACCGTTGAATGTTGGCTCACTGGTCTCGAGGCTAACCGTTCACGCGCGAGATCAAAGG 480
consensus_2580#1      --ACCATATGGGATTTTCAAATTTATCAAATAAAATATAATTCGATTAAGA-ATGAAACA 340
                        *** *      **  *  * *  **         *   ***      ** ** ***  

consensus_2580#0      TCCTGAGTCAAAATCCCGCGTGTGGGATCGTGGATCCACACTGCTGAGAAGTCTCATACT 540
consensus_2580#1      TTCACATATATAACACATGAAAAGTCCTTTTTTGTTTGCTTTAGTGCCCTGTTTAATA-- 398
                      * *  *   * **  *       *   *  *   *   *  *  **    ** * ***  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)