These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2809#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [GTCCGGTACTTTGAATAAGAAAAAGCCTACTACAAGCGCTAAACAATATGTATTATAAACAACCGCAATGATTGGGATGCATTTACCTTGTATTTTTCATGATAATGTAGTAACCACAACTATGGCATTATATTGTAATGTTTTACATTGCTCAATCTACTTTCCCAATGAGTATCATAAAATTCGCAAAATAATCAAAGTATAAAGTACCTTCAAAATCCCAAGTACTGCAACAGGATCGACAGCGTGTACTCTTGAGAAATTTCAAGAGCTATTTCGAAATAGTTGTGATCTCTGGTTTCGAGACTATTATTACTTTATATGATAACAAAAACCACTTACGAACCTGAAATTCAACATCCGAAAGGCTTATCACAGAATAATAATAAAACAAACGAATATTTAACTTTATTTGTTATTGATACATACTTTGAAAACACATAACATTGTTATCATCAGGACTTCCAGCACGCATGTACACAGTAATTTATTTTCTGAGCAACATGTACGTAAAAAAGGTGAAGATTCTATTCAGTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAGAGAAAGTAGCATACTAATAATGGGTATACCCATGATATAGGCANAAAGCGAATA] [+] EMBL CD094098 [GTCCGGTACTTTGAATAAGAAAAAGCCTACTACAAGCGCTAAACAATATGTATTATAAACAACCGCAATGATTGGGATGCATTTACCTTGTATTTTTCATGATAATGTAGTAACCACAACTATGGCATTATATTGTAATGTTTTACATTGCTCAATCTACTTTCCCAATGAGTATCATAAAATTCGCAAAATAATCAAAGTATAAAGTACCTTCAAAATCCCAAGTACTGCAACAGGATCGACAGCGTGTACTCTTGAGAAATTTCAAGAGCTATTTCGAAATAGTTGTGATCTCTGGTTTCGAGACTATTATTACTTTATATGATAACAAAAACCACTTACGAACCTGAAATTCAACATCCGAAAGGCTTATCACAGAATAATAATAAAACAAACGAATATTTAACTTTATTTGTTATTGATACATACTTTGAAAACACATAACATTGTTATCATCAGGACTTCCAGCACGCATGTACACAGTAATTTATTTTCTGAGCAACATGTACGTAAAAAAGGTGAAGATTCTATTCAGTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAGAGAAAGTAGCATACTAATAATGGGTATACCCATGATATAGGCANAAAGCGAATA] consensusID : consensus_2809#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [CATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAACGAATATTTAACTTTATTTGTTATTGATACATACTTTGAAAACACATAACATTGTTATCATCAGGACTTCCAGCACGCATGTACACAGTAATTTATTTTCTGAGCAAACATGTACGTAAAAAAGGTGAAAATTCTATTCAGTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAGAGAAGTAGCAATACTAATAATGGTAATACCATGATAATAGGCAAAAAAGCGAATACATGTGATCTAGATAGAGTGTGTAATATTAGGTAATCACGATAAAATAAAGGTAGATATTACACACAATAAATTATCGAAATAGTAAAAATAAAAGGGGGAGAATTAGTGATTCTTCAATATGATCTAAACATTAGGTGGATAAAAACAACAATATGTGAATACATAGGTGTTCAAGGTAGCAAGTAAGTGCATAAAACGCAATACAAGAG] [+] EMBL BF936772 [CATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAACGAATATTTAACTTTATTTGTTATTGATACATACTTTGAAAACACATAACATTGTTATCATCAGGACTTCCAGCACGCATGTACACAGTAATTTATTTTCTGAGCAAACATGTACGTAAAAAAGGTGAAAATTCTATTCAGTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAGAGAAGTAGCAATACTAATAATGGTAATACCATGATAATAGGCAAAAAAGCGAATACATGTGATCTAGATAGAGTGTGTAATATTAGGTAATCACGATAAAATAAAGGTAGATATTACACACAATAAATTATCGAAATAGTAAAAATAAAAGGGGGAGAATTAGTGATTCTTCAATATGATCTAAACATTAGGTGGATAAAAACAACAATATGTGAATACATAGGTGTTCAAGGTAGCAAGTAAGTGCATAAAACGCAATACAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2809#0 GTCCGGTACTTTGAATAAGAAAAAGCCTACTACAAGCGCTAAACAATATGTATTATAAAC 60 consensus_2809#1 ------------------------------------------------------------ consensus_2809#0 AACCGCAATGATTGGGATGCATTTACCTTGTATTTTTCATGATAATGTAGTAAC----CA 116 consensus_2809#1 -----------------------------------CATACGGTAATGCAGCTGCATGGCA 25 * * ***** ** * ** consensus_2809#0 CAACTATGGCATTATATTGTAATGTTTTACATTGCTCAATCTACTTTCCCAATGAGTATC 176 consensus_2809#1 TGTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAACGAATATTTAACTTTATTTGTTATT 85 * * ** * ** * * ***** * *** * * * *** consensus_2809#0 ATAAAATTCGCAAAATAATCAAAGTATAAAGTACCTTCAAAATCCCAAGTACTGCAACAG 236 consensus_2809#1 GATACATACTTTGAAAACACATAACATTGT-TATCATCAGGACTTCCAGCAC-GCA-TGT 142 * ** * ** * ** * ** ** * *** * * ** ** *** consensus_2809#0 GATCGACAGCGTGTACTCTTGAGAAATTTCAAGAGCTATTTCGAAATAGTTGTGATCTCT 296 consensus_2809#1 ACACAGTAATTTATTTTCTGAGCAAACAT------GTACGTAAAAAAGGTGAAAATTCTA 196 * * * * *** *** * ** * *** ** ** consensus_2809#0 GGTTTCGAGACTATTATTACTTTATATGATAACAAAAACCACTTACGAACCTGAA-ATTC 355 consensus_2809#1 TTCAGTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAG 256 * * ** * * ** * * *** * * *** ** * consensus_2809#0 AACATCCGAAAGGCTTATCACAG-AATAATAATAAAACAAACGAATATTTAACTTTATTT 414 consensus_2809#1 AGAAGTAGCAATACTAATAATGGTAATACCATGATAATAGGCAAAAAAGCGAATACATGT 316 * * * ** ** ** * * **** * * ** * * ** * * * ** * consensus_2809#0 GTTATTGATACATACTTTGAAAACACATAACATTGTTATCATCAGGACTTCCAGCACGCA 474 consensus_2809#1 GATCTAGATAGAGTGTGTAATATTAGGTAATCACGATAAAATAAAGGTAGATATTACACA 376 * * * **** * * * * * * *** * ** ** * * * ** ** consensus_2809#0 TGTACACAGTAATTTATTTTCTGAGCAACATGTACGTAAAAAAGGTGAAGATTCTATTCA 534 consensus_2809#1 CA-ATA-AATTATCGAAATAGTAAAAATAAAAGGGGGAGAATTAGTGATTCTTCAATATG 434 * * * * ** * * * * * * * * ** **** *** ** consensus_2809#0 GTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAG-AGA 593 consensus_2809#1 ATCTAAACATTAGGTGGATAAAAACAA-CAATATGTGAATACATAGGTGTTCAAGGTAGC 493 * ** ** ***** * * ***** * * * * * **** * ** consensus_2809#0 AAGTAGCATACTAATAATGGGTATACCCATGATATAGGCANAAAGCGAATA 644 consensus_2809#1 AAGTAA-GTGCATAAAACGCA-ATACAAGAG-------------------- 522 ***** * * * ** * **** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||