These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [ATTTTGATTTTTTCGAAGTTGAAAGATTTTCGCTTTTTCTTTTTAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCATTTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAGGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTACCAACAAATAATTCCTCTGTTGTATTACCAAATTTACAACCTGACGGACTAGTTCTTGTCAAAACATCAGTTGGTCAGTTAATATACTGTCCATCTAATCACTATAATAATAATGCCGATTCCTCAAAAATACATA] [+] EMBL CD114345 [ATTTTGATTTTTTCGAAGTTGAAAGATTTTCGCTTTTTCTTTTTAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCATTTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAGGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTACCAACAAATAATTCCTCTGTTGTATTACCAAATTTACAACCTGACGGACTAGTTCTTGTCAAAACATCAGTTGGTCAGTTAATATACTGTCCATCTAATCACTATAATAATAATGCCGATTCCTCAAAAATACATA] consensusID : consensus_3115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [TATGCATTCTAATAATAGAGAATTAAAGAATAAAACTAATGGTTTATATCTTGAAAATCTACACAAGTACCCCTCTTCAACAGCTGTTAATAATAATGTTCAAAACAATTATGCCGTTAGTAATAAAAATTTAATTAAAGGTAAATCTCAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCAATTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAAGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTANCCAACAATAATTCCTCTGTTGT] [+] EMBL CD178242 [TATGCATTCTAATAATAGAGAATTAAAGAATAAAACTAATGGTTTATATCTTGAAAATCTACACAAGTACCCCTCTTCAACAGCTGTTAATAATAATGTTCAAAACAATTATGCCGTTAGTAATAAAAATTTAATTAAAGGTAAATCTCAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCAATTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAAGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTANCCAACAATAATTCCTCTGTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3115#0 ------------------------------------------------------------ consensus_3115#1 TATGCATTCTAATAATAGAGAATTAAAGAATAAAACTAATGGTTTATATCTTGAAAATCT 60 consensus_3115#0 -----------------------------------------ATTTTGATTTTTTCGAAGT 19 consensus_3115#1 ACACAAGTACCCCTCTTCAACAGCTGTTAATAATAATGTTCAAAACAATTATGCCGTTAG 120 * *** * ** consensus_3115#0 TGAAAGATTTTCGCTTT----TTCTTTTTAAGAAAACTGTTCATATTCTACAGTGATACA 75 consensus_3115#1 TAATAAAAATTTAATTAAAGGTAAATCTCAAGAAAACTGTTCATATTCTACAGTGATACA 180 * * * * ** ** * * * ******************************* consensus_3115#0 AGATGATAAAACAACCCAATATAATCATATCATTTTAAATCCCTCTAGTCAATCTACACT 135 consensus_3115#1 AGATGATAAAACAACCCAATATAATCATATCAATTTAAATCCCTCTAGTCAATCTACACT 240 ******************************** *************************** consensus_3115#0 AGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAGGACAACA 195 consensus_3115#1 AGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAAGACAACA 300 **************************************************** ******* consensus_3115#0 AGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGC 255 consensus_3115#1 AGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGC 360 ************************************************************ consensus_3115#0 CCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCA 315 consensus_3115#1 CCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCA 420 ************************************************************ consensus_3115#0 TAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACT 375 consensus_3115#1 TAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACT 480 ************************************************************ consensus_3115#0 AAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCA 435 consensus_3115#1 AAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCA 540 ************************************************************ consensus_3115#0 GTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTACC 495 consensus_3115#1 GTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTANC 600 ********************************************************** * consensus_3115#0 AACAAATAATTCCTCTGTTGTATTACCAAATTTACAACCTGACGGACTAGTTCTTGTCAA 555 consensus_3115#1 CAACAATAATTCCTCTGTTGT--------------------------------------- 621 * ***************** consensus_3115#0 AACATCAGTTGGTCAGTTAATATACTGTCCATCTAATCACTATAATAATAATGCCGATTC 615 consensus_3115#1 ------------------------------------------------------------ consensus_3115#0 CTCAAAAATACATA 629 consensus_3115#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||